Pentatricopeptide repeat domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G01860 |
| fragaria_vesca | FvH4_5g25440 |
| malus_domestica | MD00G1136800.v1.1 MD16G1284100.v1.1 |
| prunus_persica | Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 Prupe.5G010100_v2.0.a1 |
| pyrus_communis | pycom16g26000 |
| rosa_chinensis | RchiOBHm_Chr5g0066911 |
| rosa_laevigata | RLG00000002634 RLG00000035892 |
| rosa_roxburghii | Rroxscaffold_1G00014210 |
| rosa_rugosa | Rorug05G0379600.1 |
| rosa_samantha | Rh5BG456300 Rh5CG478400 Rh5DG471100 |
| rosa_wichuraiana | Rw5G041080 Rw7G024910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 53 |
| AfaI | GTAC | 1 cut(s) | 356 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 283, 534 |
| AgsI | TTSAA | 2 cut(s) | 96, 643 |
| AjnI | CCWGG | 2 cut(s) | 190, 617 |
| AluBI | AGCT | 2 cut(s) | 556, 581 |
| AluI | AGCT | 2 cut(s) | 556, 581 |
| Alw26I | GTCTC | 3 cut(s) | 247, 292, 471 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 454 |
| AoxI | GGCC | 2 cut(s) | 45, 308 |
| ApeKI | GCWGC | 2 cut(s) | 56, 611 |
| AspS9I | GGNCC | 3 cut(s) | 188, 309, 335 |
| AvaII | GGWCC | 2 cut(s) | 188, 335 |
| BaeGI | GKGCMC | 1 cut(s) | 216 |
| BanII | GRGCYC | 3 cut(s) | 241, 278, 541 |
| BbvCI | CCTCAGC | 1 cut(s) | 552 |
| BbvI | GCAGC | 2 cut(s) | 43, 623 |
| BciT130I | CCWGG | 2 cut(s) | 192, 619 |
| BcoDI | GTCTC | 3 cut(s) | 247, 292, 471 |
| BfmI | CTRYAG | 3 cut(s) | 57, 102, 521 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 53 |
| BisI | GCNGC | 3 cut(s) | 54, 57, 612 |
| BlsI | GCNGC | 3 cut(s) | 55, 58, 613 |
| Bme1390I | CCNGG | 2 cut(s) | 192, 619 |
| Bme18I | GGWCC | 2 cut(s) | 188, 335 |
| BmgT120I | GGNCC | 3 cut(s) | 188, 309, 335 |
| BmiI | GGNNCC | 3 cut(s) | 240, 267, 337 |
| BmrFI | CCNGG | 2 cut(s) | 192, 619 |
| Bpu10I | CCTNAGC | 1 cut(s) | 552 |
| BpuEI | CTTGAG | 1 cut(s) | 109 |
| BsaI | GGTCTC | 1 cut(s) | 471 |
| BsaJI | CCNNGG | 3 cut(s) | 48, 305, 403 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 283, 534 |
| Bse1I | ACTGG | 1 cut(s) | 269 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| BseBI | CCWGG | 2 cut(s) | 192, 619 |
| BseDI | CCNNGG | 3 cut(s) | 48, 305, 403 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 283, 534 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 3 cut(s) | 501, 554, 566 |
| BseNI | ACTGG | 1 cut(s) | 269 |
| BseSI | GKGCMC | 1 cut(s) | 216 |
| BseXI | GCAGC | 2 cut(s) | 43, 623 |
| BshFI | GGCC | 2 cut(s) | 47, 310 |
| BslFI | GGGAC | 1 cut(s) | 617 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 283, 534 |
| BsmAI | GTCTC | 3 cut(s) | 247, 292, 471 |
| BsmFI | GGGAC | 1 cut(s) | 617 |
| BsnI | GGCC | 2 cut(s) | 47, 310 |
| Bso31I | GGTCTC | 1 cut(s) | 471 |
| Bsp1286I | GDGCHC | 4 cut(s) | 216, 241, 278, 541 |
| Bsp143I | GATC | 2 cut(s) | 217, 243 |
| Bsp19I | CCATGG | 1 cut(s) | 48 |
| BspACI | CCGC | 1 cut(s) | 53 |
| BspANI | GGCC | 2 cut(s) | 47, 310 |
| BspCNI | CTCAG | 3 cut(s) | 502, 553, 565 |
| BspLI | GGNNCC | 3 cut(s) | 240, 267, 337 |
| BspMAI | CTGCAG | 2 cut(s) | 61, 525 |
| BspTNI | GGTCTC | 1 cut(s) | 471 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrI | ACTGG | 1 cut(s) | 269 |
| BssECI | CCNNGG | 3 cut(s) | 48, 305, 403 |
| BssMI | GATC | 2 cut(s) | 217, 243 |
| BssT1I | CCWWGG | 3 cut(s) | 48, 305, 403 |
| Bst2UI | CCWGG | 2 cut(s) | 192, 619 |
| BstDEI | CTNAG | 4 cut(s) | 345, 510, 540, 552 |
| BstDSI | CCRYGG | 1 cut(s) | 48 |
| BstKTI | GATC | 2 cut(s) | 220, 246 |
| BstMAI | GTCTC | 3 cut(s) | 247, 292, 471 |
| BstMBI | GATC | 2 cut(s) | 217, 243 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstNI | CCWGG | 2 cut(s) | 192, 619 |
| BstSCI | CCNGG | 2 cut(s) | 190, 617 |
| BstSFI | CTRYAG | 3 cut(s) | 57, 102, 521 |
| BstSLI | GKGCMC | 1 cut(s) | 216 |
| BstV1I | GCAGC | 2 cut(s) | 43, 623 |
| BsuRI | GGCC | 2 cut(s) | 47, 310 |
| BtgI | CCRYGG | 1 cut(s) | 48 |
| BtsIMutI | CAGTG | 1 cut(s) | 276 |
| CaiI | CAGNNNCTG | 1 cut(s) | 454 |
| Cfr13I | GGNCC | 3 cut(s) | 188, 309, 335 |
| Csp6I | GTAC | 1 cut(s) | 355 |
| CviAII | CATG | 5 cut(s) | 49, 221, 247, 475, 499 |
| CviQI | GTAC | 1 cut(s) | 355 |
| DdeI | CTNAG | 4 cut(s) | 345, 510, 540, 552 |
| DpnI | GATC | 2 cut(s) | 219, 245 |
| DpnII | GATC | 2 cut(s) | 217, 243 |
| Eco130I | CCWWGG | 3 cut(s) | 48, 305, 403 |
| Eco24I | GRGCYC | 3 cut(s) | 241, 278, 541 |
| Eco31I | GGTCTC | 1 cut(s) | 471 |
| Eco47I | GGWCC | 2 cut(s) | 188, 335 |
| EcoO109I | RGGNCCY | 1 cut(s) | 188 |
| EcoRII | CCWGG | 2 cut(s) | 190, 617 |
| EcoT14I | CCWWGG | 3 cut(s) | 48, 305, 403 |
| EcoT38I | GRGCYC | 3 cut(s) | 241, 278, 541 |
| ErhI | CCWWGG | 3 cut(s) | 48, 305, 403 |
| FaeI | CATG | 5 cut(s) | 52, 224, 250, 478, 502 |
| FaiI | YATR | 9 cut(s) | 50, 104, 222, 248, 341, 476, 500, 566, 627 |
| FaqI | GGGAC | 1 cut(s) | 617 |
| FatI | CATG | 5 cut(s) | 48, 220, 246, 474, 498 |
| Fnu4HI | GCNGC | 3 cut(s) | 54, 57, 612 |
| FriOI | GRGCYC | 3 cut(s) | 241, 278, 541 |
| Fsp4HI | GCNGC | 3 cut(s) | 54, 57, 612 |
| GluI | GCNGC | 3 cut(s) | 54, 57, 612 |
| HaeIII | GGCC | 2 cut(s) | 47, 310 |
| Hin1II | CATG | 5 cut(s) | 52, 224, 250, 478, 502 |
| Hpy166II | GTNNAC | 1 cut(s) | 232 |
| Hpy188I | TCNGA | 4 cut(s) | 75, 243, 435, 543 |
| Hpy188III | TCNNGA | 3 cut(s) | 297, 485, 509 |
| Hpy8I | GTNNAC | 1 cut(s) | 232 |
| HpyAV | CCTTC | 4 cut(s) | 179, 303, 508, 538 |
| HpyCH4V | TGCA | 4 cut(s) | 59, 523, 611, 638 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpyF3I | CTNAG | 4 cut(s) | 345, 510, 540, 552 |
| Hsp92II | CATG | 5 cut(s) | 52, 224, 250, 478, 502 |
| Kzo9I | GATC | 2 cut(s) | 217, 243 |
| LmnI | GCTCC | 2 cut(s) | 244, 407 |
| LpnPI | CCDG | 7 cut(s) | 177, 204, 220, 282, 522, 604, 631 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 623 |
| MaeIII | GTNAC | 1 cut(s) | 494 |
| MalI | GATC | 2 cut(s) | 219, 245 |
| MboI | GATC | 2 cut(s) | 217, 243 |
| MboII | GAAGA | 1 cut(s) | 50 |
| MhlI | GDGCHC | 4 cut(s) | 216, 241, 278, 541 |
| MluCI | AATT | 7 cut(s) | 174, 195, 393, 480, 488, 574, 587 |
| MnlI | CCTC | 8 cut(s) | 119, 137, 175, 194, 220, 435, 561, 625 |
| MseI | TTAA | 2 cut(s) | 327, 560 |
| MslI | CAYNNNNRTG | 1 cut(s) | 219 |
| MspR9I | CCNGG | 2 cut(s) | 192, 619 |
| MvaI | CCWGG | 2 cut(s) | 192, 619 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NcoI | CCATGG | 1 cut(s) | 48 |
| NdeII | GATC | 2 cut(s) | 217, 243 |
| NlaIII | CATG | 5 cut(s) | 52, 224, 250, 478, 502 |
| NlaIV | GGNNCC | 3 cut(s) | 240, 267, 337 |
| NmuCI | GTSAC | 1 cut(s) | 494 |
| PkrI | GCNGC | 3 cut(s) | 55, 58, 613 |
| PpuMI | RGGWCCY | 1 cut(s) | 188 |
| Psp5II | RGGWCCY | 1 cut(s) | 188 |
| Psp6I | CCWGG | 2 cut(s) | 190, 617 |
| PspGI | CCWGG | 2 cut(s) | 190, 617 |
| PspN4I | GGNNCC | 3 cut(s) | 240, 267, 337 |
| PspPI | GGNCC | 3 cut(s) | 188, 309, 335 |
| PspPPI | RGGWCCY | 1 cut(s) | 188 |
| PstI | CTGCAG | 2 cut(s) | 61, 525 |
| PstNI | CAGNNNCTG | 1 cut(s) | 454 |
| RsaI | GTAC | 1 cut(s) | 356 |
| RsaNI | GTAC | 1 cut(s) | 355 |
| RseI | CAYNNNNRTG | 1 cut(s) | 219 |
| SaqAI | TTAA | 2 cut(s) | 327, 560 |
| SatI | GCNGC | 3 cut(s) | 54, 57, 612 |
| Sau3AI | GATC | 2 cut(s) | 217, 243 |
| Sau96I | GGNCC | 3 cut(s) | 188, 309, 335 |
| ScrFI | CCNGG | 2 cut(s) | 192, 619 |
| SduI | GDGCHC | 4 cut(s) | 216, 241, 278, 541 |
| SfcI | CTRYAG | 3 cut(s) | 57, 102, 521 |
| SinI | GGWCC | 2 cut(s) | 188, 335 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 219 |
| SmlI | CTYRAG | 1 cut(s) | 88 |
| SmoI | CTYRAG | 1 cut(s) | 88 |
| Sse9I | AATT | 7 cut(s) | 174, 195, 393, 480, 488, 574, 587 |
| SsiI | CCGC | 1 cut(s) | 53 |
| StyD4I | CCNGG | 2 cut(s) | 190, 617 |
| StyI | CCWWGG | 3 cut(s) | 48, 305, 403 |
| TaqI | TCGA | 3 cut(s) | 81, 289, 296 |
| TasI | AATT | 7 cut(s) | 174, 195, 393, 480, 488, 574, 587 |
| TatI | WGTACW | 1 cut(s) | 354 |
| TauI | GCSGC | 1 cut(s) | 56 |
| Tru1I | TTAA | 2 cut(s) | 327, 560 |
| Tru9I | TTAA | 2 cut(s) | 327, 560 |
| TscAI | CASTG | 1 cut(s) | 276 |
| TseFI | GTSAC | 1 cut(s) | 494 |
| TseI | GCWGC | 2 cut(s) | 56, 611 |
| Tsp45I | GTSAC | 1 cut(s) | 494 |
| TspDTI | ATGAA | 1 cut(s) | 51 |
| TspRI | CASTG | 1 cut(s) | 276 |
| VpaK11BI | GGWCC | 2 cut(s) | 188, 335 |