Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003035

Physical Location & Seq

Genomic Coordinates Reverse (-)

18954594 .. 18962137

Gene Structure 7544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27740.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGTTTCACTCTCTCCGATTGACCACCAGGTCCTCCTCCCTCAGACGACTCATCTCCGCCGCGACCGCCGCCGCCAACGGAGTCTCCGTCTCCGGGAGAAGAGGTTCTCTCGCCCAAGTCCACCAGCAGCAGCGGCGGCACAAGTTCAGCAGCGAAGGCGGAGGAGAGTACGAGCACATAAGGGCGGAGGTGAACTGTCCGCGATGCTCGAAGCAAATGGTGGTTCTGTTCTCGACGCGGCCGCTGTCGATTACGGGAAGAGAGACGGGGCTTTACCAGGCCGTCAATCTGTGCAGCAATTGCAACACCGCCTTCTATTTCAGGCCGTCCAAGCTCCTCCCTCTTCATGGCACTTTCCTCGAGATTGGCAGGCTTAAGCCTCAGCCTCCCCCGGCCGATTCCGAATCCTGCCAGACTTCCTCGCCGGCGATGGACTTGCCCACCCCCAAGGAGATATGTAAGGCCCTTGACGACTTTGTTATCGGCCAAGAAAGAGCCAAAAAGGTGCTTTCGGTTGCGGTTTATAACCACTACAAAAGAATACGGCACTCCTCCCAAGAGAGAAGAAGGACTACCAGGGCTGGTGTATATTCAGTTGATTGTAAACCTCACAGTGTTGATACTGATTCTGTTGAGTTGGAGAAGAGCAATGTGTTACTGATGGGCCCCACTGGTTCAGGGAAGACTTTACTTGCTAAAACACTAGCCCGTGTTGTGAATGTTCCATTTGCCATTGCTGATGCAACAACATTAACCCAGGCAGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAAACTTCTTACGGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGACGAAGTTGATAAGATAATAAAGAAGGTTGAGAGCTCAAATATTGGCCGAGATGTATCTGGAGAGGGTGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACTGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAACATCCCCGTGGTGATAGTATACAGATGGATACAAAGGATATCCTTTTCATATGTGGTGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGGGCAAACATGAGGTCCAGTGGATTGATTGACGCCATAGTGACATCATCTTTGTTGGAATCTGTGGAAAGTGATGATCTTATTGCTTATGGCCTGATACCTGAGTTTGTTGGGCGCTTTCCTATTTTAGCGAGTTTGTCATCTTTAAACGAGGACCAACTTGTTCAGGTACTCACAGAACCTAAAAATGCCCTCGGTAAACAGTACAAGATGATGTTCGACATGAACGATGTCAAATTACACTTTACTGACGATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCAAGAGGTTTGAGAGCCATATTGGAGAATATTCTTACAGAAGCAATGTTCGAGGTTCCAGACATCAAGACAGAAACCAATAGTATACATGCAGTTCTGGTTGATGAAGAAGCTGTTGGGTCAGTGGACGCTCCAGGACGAGGAGCCAAAATTCTTAGTGGTGATGACATAGCGGGGCAATTTCTTCATGAAACAAAGTTGAGAGAGGACATGCGAAAGCAGGGGGCAGGTGAAGATGAGTGTTTGCAAGAAGTTTTGGAGCTCCAATCAGGATCCTTTGGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

572

Amino Acids

62.36

Weight (kDa)

6.39

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	214 - 418	9.6e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	218 - 323	3.8e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	425 - 494	2.5e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49840 AT5G49840 AT5G49840 AT5G49840
fragaria_vesca	FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740
malus_domestica	MD08G1248400.v1.1
prunus_persica	Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1
pyrus_communis	pycom08g21520
rosa_chinensis	RchiOBHm_Chr7g0219511
rosa_laevigata	RLG00000002286
rosa_multiflora	Rmu_sc0003047.1_g000013
rosa_roxburghii	Rroxscaffold_3G00240000
rosa_rugosa	Rorug07G0185800 Rorug07G0185900
rosa_samantha	Rh7AG328400 Rh7BG318900 Rh7CG345800 Rh7DG324800
rosa_wichuraiana	Rw7G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
AarI	CACCTGC	1 cut(s)	1646
AasI	GACNNNNNNGTC	1 cut(s)	28
Acc36I	ACCTGC	2 cut(s)	752, 1646
AccI	GTMKAC	3 cut(s)	852, 1015, 1513
AccII	CGCG	3 cut(s)	62, 202, 238
AclWI	GGATC	2 cut(s)	1695, 1708
AcoI	YGGCCR	4 cut(s)	239, 393, 484, 904
AcsI	RAATTY	1 cut(s)	1578
AcyI	GRCGYC	1 cut(s)	1161
AfaI	GTAC	3 cut(s)	170, 1299, 1334
AfiI	CCNNNNNNNGG	4 cut(s)	93, 347, 983, 1568
AflII	CTTAAG	1 cut(s)	374
AgeI	ACCGGT	1 cut(s)	1424
AjnI	CCWGG	5 cut(s)	26, 276, 575, 756, 1561
AjuI	GAANNNNNNNTTGG	2 cut(s)	1527, 1559
AloI	GAACNNNNNNTCC	4 cut(s)	88, 120, 1110, 1142
AluBI	AGCT	7 cut(s)	334, 815, 836, 894, 989, 1541, 1690
AluI	AGCT	7 cut(s)	334, 815, 836, 894, 989, 1541, 1690
Alw21I	GWGCWC	5 cut(s)	177, 896, 991, 1123, 1692
Alw26I	GTCTC	3 cut(s)	88, 94, 257
AlwI	GGATC	2 cut(s)	1695, 1708
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	9 cut(s)	239, 279, 323, 393, 462, 484, 664, 904, 1219
ApaI	GGGCCC	1 cut(s)	668
ApeKI	GCWGC	5 cut(s)	127, 130, 150, 294, 833
ApoI	RAATTY	1 cut(s)	1578
ArsI	GACNNNNNNTTYG	4 cut(s)	1127, 1159, 1162, 1194
AsiGI	ACCGGT	1 cut(s)	1424
Asp700I	GAANNNNTTC	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	1245
AspS9I	GGNCC	6 cut(s)	30, 463, 664, 665, 1143, 1282
AsuC2I	CCSGG	2 cut(s)	94, 392
AsuHPI	GGTGA	4 cut(s)	202, 1019, 1601, 1670
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	3 cut(s)	30, 1143, 1282
BaeGI	GKGCMC	1 cut(s)	668
BaeI	ACNNNNGTAYC	2 cut(s)	1217, 1250
BamHI	GGATCC	1 cut(s)	1700
BanII	GRGCYC	4 cut(s)	668, 896, 991, 1692
BarI	GAAGNNNNNNTAC	2 cut(s)	556, 588
BbsI	GAAGAC	2 cut(s)	689, 1082
Bbv12I	GWGCWC	5 cut(s)	177, 896, 991, 1123, 1692
BbvCI	CCTCAGC	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	139, 142, 162, 306, 845
BccI	CCATC	3 cut(s)	424, 655, 1015
BceAI	ACGGC	3 cut(s)	266, 310, 560
BcgI	CGANNNNNNTGC	4 cut(s)	340, 374, 418, 452
BciT130I	CCWGG	5 cut(s)	28, 278, 577, 758, 1563
BciVI	GTATCC	1 cut(s)	1018
BcnI	CCSGG	2 cut(s)	94, 392
BcoDI	GTCTC	3 cut(s)	88, 94, 257
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	963
BfoI	RGCGCY	1 cut(s)	1246
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	2 cut(s)	752, 1646
BfuI	GTATCC	1 cut(s)	1018
Bme1390I	CCNGG	7 cut(s)	28, 94, 278, 392, 577, 758, 1563
Bme18I	GGWCC	3 cut(s)	30, 1143, 1282
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	6 cut(s)	30, 463, 664, 665, 1143, 1282
BmiI	GGNNCC	5 cut(s)	666, 667, 1485, 1573, 1702
BmrFI	CCNGG	7 cut(s)	28, 94, 278, 392, 577, 758, 1563
BmsI	GCATC	3 cut(s)	194, 730, 1372
BpiI	GAAGAC	2 cut(s)	689, 1082
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
BpmI	CTGGAG	2 cut(s)	939, 1545
Bpu10I	CCTNAGC	1 cut(s)	381
BpuMI	CCSGG	2 cut(s)	94, 392
BsaHI	GRCGYC	1 cut(s)	1161
BsaJI	CCNNGG	6 cut(s)	390, 447, 576, 756, 1003, 1321
BsaWI	WCCGGW	1 cut(s)	1424
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 347, 983, 1568
Bse118I	RCCGGY	2 cut(s)	424, 1424
Bse1I	ACTGG	3 cut(s)	676, 1124, 1146
Bse3DI	GCAATG	5 cut(s)	655, 732, 938, 1416, 1479
BseBI	CCWGG	5 cut(s)	28, 278, 577, 758, 1563
BseDI	CCNNGG	6 cut(s)	390, 447, 576, 756, 1003, 1321
BseGI	GGATG	1 cut(s)	997
BseLI	CCNNNNNNNGG	4 cut(s)	93, 347, 983, 1568
BseMI	GCAATG	5 cut(s)	655, 732, 938, 1416, 1479
BseMII	CTCAG	6 cut(s)	55, 395, 807, 851, 1221, 1379
BseNI	ACTGG	3 cut(s)	676, 1124, 1146
BseRI	GAGGAG	5 cut(s)	25, 177, 326, 541, 1584
BseSI	GKGCMC	1 cut(s)	668
BseX3I	CGGCCG	2 cut(s)	239, 393
BseXI	GCAGC	5 cut(s)	139, 142, 162, 306, 845
BsgI	GTGCAG	1 cut(s)	313
Bsh1236I	CGCG	3 cut(s)	62, 202, 238
Bsh1285I	CGRYCG	3 cut(s)	66, 242, 396
BshFI	GGCC	9 cut(s)	241, 281, 325, 395, 464, 486, 666, 906, 1221
BshTI	ACCGGT	1 cut(s)	1424
BsiEI	CGRYCG	3 cut(s)	66, 242, 396
BsiHKAI	GWGCWC	5 cut(s)	177, 896, 991, 1123, 1692
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	93, 392, 425, 1425
BslI	CCNNNNNNNGG	4 cut(s)	93, 347, 983, 1568
BsmAI	GTCTC	3 cut(s)	88, 94, 257
BsmBI	CGTCTC	2 cut(s)	94, 257
BsnI	GGCC	9 cut(s)	241, 281, 325, 395, 464, 486, 666, 906, 1221
BsoBI	CYCGRG	1 cut(s)	359
Bsp120I	GGGCCC	1 cut(s)	664
Bsp1286I	GDGCHC	6 cut(s)	177, 668, 896, 991, 1123, 1692
Bsp143I	GATC	2 cut(s)	1204, 1700
BspANI	GGCC	9 cut(s)	241, 281, 325, 395, 464, 486, 666, 906, 1221
BspCNI	CTCAG	6 cut(s)	54, 394, 808, 850, 1222, 1380
BspFNI	CGCG	3 cut(s)	62, 202, 238
BspHI	TCATGA	1 cut(s)	1615
BspLI	GGNNCC	5 cut(s)	666, 667, 1485, 1573, 1702
BspMI	ACCTGC	2 cut(s)	752, 1646
BspPI	GGATC	2 cut(s)	1695, 1708
BspQI	GCTCTTC	1 cut(s)	638
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	5 cut(s)	655, 732, 938, 1416, 1479
BsrFI	RCCGGY	2 cut(s)	424, 1424
BsrI	ACTGG	3 cut(s)	676, 1124, 1146
BssAI	RCCGGY	2 cut(s)	424, 1424
BssECI	CCNNGG	6 cut(s)	390, 447, 576, 756, 1003, 1321
BssMI	GATC	2 cut(s)	1204, 1700
BssNAI	GTATAC	2 cut(s)	1016, 1514
BssNI	GRCGYC	1 cut(s)	1161
BssT1I	CCWWGG	1 cut(s)	447
Bst1107I	GTATAC	2 cut(s)	1016, 1514
Bst2UI	CCWGG	5 cut(s)	28, 278, 577, 758, 1563
Bst4CI	ACNGT	4 cut(s)	197, 614, 964, 1332
Bst6I	CTCTTC	4 cut(s)	94, 253, 348, 638
BstACI	GRCGYC	1 cut(s)	1161
BstAFI	CTTAAG	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	371, 426
BstDEI	CTNAG	7 cut(s)	41, 381, 816, 837, 1230, 1388, 1583
BstDSI	CCRYGG	1 cut(s)	1003
BstENI	CCTNNNNNAGG	1 cut(s)	981
BstF5I	GGATG	1 cut(s)	997
BstFNI	CGCG	3 cut(s)	62, 202, 238
BstH2I	RGCGCY	1 cut(s)	1246
BstHHI	GCGC	1 cut(s)	1245
BstKTI	GATC	2 cut(s)	1207, 1703
BstMAI	GTCTC	3 cut(s)	88, 94, 257
BstMBI	GATC	2 cut(s)	1204, 1700
BstMCI	CGRYCG	3 cut(s)	66, 242, 396
BstMWI	GCNNNNNNNGC	8 cut(s)	65, 68, 133, 136, 156, 300, 331, 1406
BstNI	CCWGG	5 cut(s)	28, 278, 577, 758, 1563
BstNSI	RCATGY	2 cut(s)	1520, 1642
BstSCI	CCNGG	7 cut(s)	26, 92, 276, 390, 575, 756, 1561
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	668
BstUI	CGCG	3 cut(s)	62, 202, 238
BstV1I	GCAGC	5 cut(s)	139, 142, 162, 306, 845
BstV2I	GAAGAC	2 cut(s)	689, 1082
BstX2I	RGATCY	1 cut(s)	1700
BstYI	RGATCY	1 cut(s)	1700
BstZ17I	GTATAC	2 cut(s)	1016, 1514
BstZI	CGGCCG	2 cut(s)	239, 393
BsuI	GTATCC	1 cut(s)	1018
BsuRI	GGCC	9 cut(s)	241, 281, 325, 395, 464, 486, 666, 906, 1221
BtgI	CCRYGG	1 cut(s)	1003
BtgZI	GCGATG	2 cut(s)	217, 443
BtsCI	GGATG	1 cut(s)	997
BtsIMutI	CAGTG	5 cut(s)	619, 669, 1153, 1385, 1557
BveI	ACCTGC	2 cut(s)	752, 1646
Cac8I	GCNNGC	2 cut(s)	371, 426
CciI	TCATGA	1 cut(s)	1615
CciNI	GCGGCCGC	1 cut(s)	239
CfoI	GCGC	1 cut(s)	1245
Cfr10I	RCCGGY	2 cut(s)	424, 1424
Cfr13I	GGNCC	6 cut(s)	30, 463, 664, 665, 1143, 1282
CseI	GACGC	3 cut(s)	244, 1169, 1565
CsiI	ACCWGGT	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	169, 1298, 1333
CspAI	ACCGGT	1 cut(s)	1424
CviAII	CATG	6 cut(s)	347, 1138, 1351, 1517, 1616, 1639
CviQI	GTAC	3 cut(s)	169, 1298, 1333
DdeI	CTNAG	7 cut(s)	41, 381, 816, 837, 1230, 1388, 1583
DpnI	GATC	2 cut(s)	1206, 1702
DpnII	GATC	2 cut(s)	1204, 1700
DraI	TTTAAA	1 cut(s)	1275
DrdI	GACNNNNNNGTC	1 cut(s)	28
DseDI	GACNNNNNNGTC	1 cut(s)	28
EaeI	YGGCCR	4 cut(s)	239, 393, 484, 904
EagI	CGGCCG	2 cut(s)	239, 393
Eam1104I	CTCTTC	4 cut(s)	94, 253, 348, 638
EarI	CTCTTC	4 cut(s)	94, 253, 348, 638
EciI	GGCGGA	3 cut(s)	46, 174, 200
Ecl136II	GAGCTC	3 cut(s)	894, 989, 1690
EclXI	CGGCCG	2 cut(s)	239, 393
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	4 cut(s)	668, 896, 991, 1692
Eco32I	GATATC	1 cut(s)	1036
Eco47I	GGWCC	3 cut(s)	30, 1143, 1282
Eco52I	CGGCCG	2 cut(s)	239, 393
Eco53kI	GAGCTC	3 cut(s)	894, 989, 1690
Eco88I	CYCGRG	1 cut(s)	359
EcoICRI	GAGCTC	3 cut(s)	894, 989, 1690
EcoNI	CCTNNNNNAGG	1 cut(s)	981
EcoO109I	RGGNCCY	3 cut(s)	30, 463, 665
EcoRII	CCWGG	5 cut(s)	26, 276, 575, 756, 1561
EcoRV	GATATC	1 cut(s)	1036
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	4 cut(s)	668, 896, 991, 1692
ErhI	CCWWGG	1 cut(s)	447
Esp3I	CGTCTC	2 cut(s)	94, 257
FaeI	CATG	6 cut(s)	350, 1141, 1354, 1520, 1619, 1642
FatI	CATG	6 cut(s)	346, 1137, 1350, 1516, 1615, 1638
FauI	CCCGC	1 cut(s)	1594
FauNDI	CATATG	1 cut(s)	1046
FblI	GTMKAC	3 cut(s)	852, 1015, 1513
FokI	GGATG	1 cut(s)	984
FriOI	GRGCYC	4 cut(s)	668, 896, 991, 1692
FspBI	CTAG	1 cut(s)	704
GlaI	GCGC	1 cut(s)	1244
GsuI	CTGGAG	2 cut(s)	939, 1545
HaeII	RGCGCY	1 cut(s)	1246
HaeIII	GGCC	9 cut(s)	241, 281, 325, 395, 464, 486, 666, 906, 1221
HapII	CCGG	4 cut(s)	93, 392, 425, 1425
HgaI	GACGC	3 cut(s)	244, 1169, 1565
HhaI	GCGC	1 cut(s)	1245
Hin1I	GRCGYC	1 cut(s)	1161
Hin1II	CATG	6 cut(s)	350, 1141, 1354, 1520, 1619, 1642
Hin6I	GCGC	1 cut(s)	1243
HinP1I	GCGC	1 cut(s)	1243
HinfI	GANTC	8 cut(s)	48, 81, 398, 404, 626, 785, 1100, 1187
HpaII	CCGG	4 cut(s)	93, 392, 425, 1425
HphI	GGTGA	4 cut(s)	202, 1019, 1601, 1670
Hpy166II	GTNNAC	8 cut(s)	121, 193, 605, 853, 1016, 1328, 1514, 1555
Hpy188I	TCNGA	6 cut(s)	17, 44, 403, 840, 993, 1087
Hpy188III	TCNNGA	8 cut(s)	232, 361, 918, 977, 1487, 1495, 1616, 1698
Hpy8I	GTNNAC	8 cut(s)	121, 193, 605, 853, 1016, 1328, 1514, 1555
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	6 cut(s)	149, 322, 561, 877, 950, 1399
HpyCH4III	ACNGT	4 cut(s)	197, 614, 964, 1332
HpyCH4V	TGCA	8 cut(s)	294, 303, 743, 1385, 1400, 1430, 1520, 1675
HpyF10VI	GCNNNNNNNGC	8 cut(s)	65, 68, 133, 136, 156, 300, 331, 1406
HpyF3I	CTNAG	7 cut(s)	41, 381, 816, 837, 1230, 1388, 1583
Hsp92I	GRCGYC	1 cut(s)	1161
Hsp92II	CATG	6 cut(s)	350, 1141, 1354, 1520, 1619, 1642
HspAI	GCGC	1 cut(s)	1243
KroI	GCCGGC	1 cut(s)	424
KroNI	GCCGGC	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	1204, 1700
LguI	GCTCTTC	1 cut(s)	638
LmnI	GCTCC	7 cut(s)	339, 986, 1118, 1564, 1571, 1687, 1695
Lsp1109I	GCAGC	5 cut(s)	139, 142, 162, 306, 845
LweI	GCATC	3 cut(s)	194, 730, 1372
MabI	ACCWGGT	1 cut(s)	26
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	2 cut(s)	654, 1168
MalI	GATC	2 cut(s)	1206, 1702
MboI	GATC	2 cut(s)	1204, 1700
MfeI	CAATTG	1 cut(s)	298
MflI	RGATCY	1 cut(s)	1700
MhlI	GDGCHC	6 cut(s)	177, 668, 896, 991, 1123, 1692
MluCI	AATT	4 cut(s)	298, 1364, 1578, 1607
MlyI	GAGTC	2 cut(s)	42, 90
MmeI	TCCRAC	5 cut(s)	618, 751, 933, 955, 1164
MreI	CGCCGGCG	1 cut(s)	424
MroNI	GCCGGC	1 cut(s)	424
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	4 cut(s)	375, 752, 969, 1274
MslI	CAYNNNNRTG	1 cut(s)	1002
MspA1I	CMGCKG	2 cut(s)	133, 244
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	4 cut(s)	93, 392, 425, 1425
MspR9I	CCNGG	7 cut(s)	28, 94, 278, 392, 577, 758, 1563
MunI	CAATTG	1 cut(s)	298
MvaI	CCWGG	5 cut(s)	28, 278, 577, 758, 1563
MvnI	CGCG	3 cut(s)	62, 202, 238
MwoI	GCNNNNNNNGC	8 cut(s)	65, 68, 133, 136, 156, 300, 331, 1406
NaeI	GCCGGC	1 cut(s)	426
NciI	CCSGG	2 cut(s)	94, 392
NdeI	CATATG	1 cut(s)	1046
NdeII	GATC	2 cut(s)	1204, 1700
NgoMIV	GCCGGC	1 cut(s)	424
NlaIII	CATG	6 cut(s)	350, 1141, 1354, 1520, 1619, 1642
NlaIV	GGNNCC	5 cut(s)	666, 667, 1485, 1573, 1702
NmeAIII	GCCGAG	1 cut(s)	932
NmuCI	GTSAC	1 cut(s)	1168
NotI	GCGGCCGC	1 cut(s)	239
NspI	RCATGY	2 cut(s)	1520, 1642
PaeR7I	CTCGAG	1 cut(s)	359
PagI	TCATGA	1 cut(s)	1615
PaqCI	CACCTGC	1 cut(s)	1646
PciSI	GCTCTTC	1 cut(s)	638
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 1353
PdiI	GCCGGC	1 cut(s)	426
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	6 cut(s)	398, 404, 626, 785, 1100, 1187
PfoI	TCCNGGA	2 cut(s)	92, 1561
PinAI	ACCGGT	1 cut(s)	1424
PleI	GAGTC	2 cut(s)	42, 89
PpsI	GAGTC	2 cut(s)	42, 89
PpuMI	RGGWCCY	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	525
Psp124BI	GAGCTC	3 cut(s)	896, 991, 1692
Psp5II	RGGWCCY	1 cut(s)	30
Psp6I	CCWGG	5 cut(s)	26, 276, 575, 756, 1561
PspGI	CCWGG	5 cut(s)	26, 276, 575, 756, 1561
PspN4I	GGNNCC	5 cut(s)	666, 667, 1485, 1573, 1702
PspOMI	GGGCCC	1 cut(s)	664
PspPI	GGNCC	6 cut(s)	30, 463, 664, 665, 1143, 1282
PspPPI	RGGWCCY	1 cut(s)	30
PsrI	GAACNNNNNNTAC	2 cut(s)	957, 989
PsuI	RGATCY	1 cut(s)	1700
RsaI	GTAC	3 cut(s)	170, 1299, 1334
RsaNI	GTAC	3 cut(s)	169, 1298, 1333
RseI	CAYNNNNRTG	1 cut(s)	1002
SacI	GAGCTC	3 cut(s)	896, 991, 1692
SapI	GCTCTTC	1 cut(s)	638
SaqAI	TTAA	4 cut(s)	375, 752, 969, 1274
Sau3AI	GATC	2 cut(s)	1204, 1700
Sau96I	GGNCC	6 cut(s)	30, 463, 664, 665, 1143, 1282
SchI	GAGTC	2 cut(s)	42, 90
ScrFI	CCNGG	7 cut(s)	28, 94, 278, 392, 577, 758, 1563
SduI	GDGCHC	6 cut(s)	177, 668, 896, 991, 1123, 1692
SexAI	ACCWGGT	1 cut(s)	26
SfaNI	GCATC	3 cut(s)	194, 730, 1372
SfcI	CTRYAG	1 cut(s)	963
Sfr274I	CTCGAG	1 cut(s)	359
SgrAI	CRCCGGYG	2 cut(s)	424, 1424
SinI	GGWCC	3 cut(s)	30, 1143, 1282
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	1002
SmlI	CTYRAG	2 cut(s)	359, 374
SmoI	CTYRAG	2 cut(s)	359, 374
Sse9I	AATT	4 cut(s)	298, 1364, 1578, 1607
SspI	AATATT	3 cut(s)	792, 901, 1459
SspMI	CTAG	1 cut(s)	704
SstI	GAGCTC	3 cut(s)	896, 991, 1692
StyD4I	CCNGG	7 cut(s)	26, 92, 276, 390, 575, 756, 1561
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	4 cut(s)	197, 614, 964, 1332
TaqI	TCGA	6 cut(s)	209, 233, 248, 360, 1347, 1479
TasI	AATT	4 cut(s)	298, 1364, 1578, 1607
TatI	WGTACW	1 cut(s)	1332
TauI	GCSGC	7 cut(s)	62, 71, 74, 136, 139, 241, 244
TfiI	GAWTC	6 cut(s)	398, 404, 626, 785, 1100, 1187
Tru1I	TTAA	4 cut(s)	375, 752, 969, 1274
Tru9I	TTAA	4 cut(s)	375, 752, 969, 1274
TscAI	CASTG	5 cut(s)	619, 676, 1153, 1392, 1557
TseFI	GTSAC	1 cut(s)	1168
TseI	GCWGC	5 cut(s)	127, 130, 150, 294, 833
Tsp45I	GTSAC	1 cut(s)	1168
TspDTI	ATGAA	6 cut(s)	335, 1033, 1367, 1548, 1604, 1632
TspGWI	ACGGA	3 cut(s)	76, 93, 824
TspRI	CASTG	5 cut(s)	619, 676, 1153, 1392, 1557
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	3 cut(s)	30, 1143, 1282
XagI	CCTNNNNNAGG	1 cut(s)	981
XapI	RAATTY	1 cut(s)	1578
XceI	RCATGY	2 cut(s)	1520, 1642
XhoI	CTCGAG	1 cut(s)	359
XmiI	GTMKAC	3 cut(s)	852, 1015, 1513
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.