Rroxscaffold_3G00240000

ATP-dependent Clp protease ATP-binding subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003035
Physical Location & Seq
Forward (+)
31370478 .. 31376920
6443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240000.1

Sequence Viewer

Length: 1704 bp
ATGTTTCACACTCTCAGATTGAGCACCAGGTCCTCCCTCACACGACTAATCGCCGCCGCCGCCGGCACAAGCGCCACCGCAACCACCAGAATCTCCGTATCCGGAAGAGTTGCTGTCACTGCTAGTGGTGGTGCAGAAGCACAACCCCAGCAGCAGCAGCGGCGGCACAAGTGCAGCGAATTCGGAGGAGGAGAGTACGAGAACATAAGGGCTGACGTGAACTGTCCCCGATGCTCGAAGCAAATGGCGGTCCTGTTCTCGACCCGACCGCTGTCGATTACGGGCCGAGAGACTGGGGTTTACCAGGCCGTGAATCTGTGCCCGAATTGCAACACCGCCTTCTATTTCAGGCCATCCAAGCTCCTCCCTTTGCAAGGCACTTTCCTCGAGATTGACCTCTTGACTCCCAAGGAGATATGTAAGGCTCTTGATGACTTTGTTATCGGCCAAGAAAGAGCCAAAAAGGTGCTTTCGGTTGCGGTTTACAACCATTACAAAAGAATACGGCATTCTTCCCAACAGAGAAGGTCTGGTGTAGATTCAGTTGATTGTAAGCCTCACAGTGTTGATACTGATTCTGTTGAGTTGGAGAAGAGCAATGTGTTGTTAATGGGTCCCACTGGTTCAGGGAAGACTTTACTTGCAAAAACACTAGCCCGTGTTGTGAATGTTCCGTTTGCCATTGCTGATGCAACAACATTAACACAGGCAAGTTGCACTGTTCAATATTATTTTGCAAATGATGATGCAGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAGACTTCTTACGGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGATGAAGTTGATAAGATAATAAAGAAGGCTGAGAGCTTAAATATTGGCCGAGATGTGTCTGGAGAGGGCGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACCGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAGCATCCTCGTGGTGATAGTATACAGATGGATACAAAGGATATCCTTTTCATATGTGGTGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCAAACATGAGGTCCAGTGGATTGACTGACGCCATAGTGACATCATCCTTGTTGGAATCTGTAGAAAGTGGAGATCTTATTGCTTATGGCCTGATACCCGAATTTGTTGGGCGCTTTCCTATTTTAGTGAGTTTGTCATCTTTAAACGAGGATCAACTTGTTCAGGTCCTCACAGAACCTAAAAATGCTCTTGGTAAACAGTACAAGATGATGTTTGACATGAACAATGTCAAATTACATTTTACTGACGATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCTCGAGGTTTGAGAGCCATATTGGAGAATGTTCTTACAGAAGCAATGTTCGAGGTTCCAGACATCAAGACAGAAACCAATAGTATACATGCAGTTCTGGTTGATGAAGAAGCTGTTGGGTCAGTGGATGCTCCAGGACGAGGAGCAAAAATTCTTAGTGGTGAAGGCATAGTGGAGCAATTTCTTCATGAAACAAAGTCGAGAGAGCACATGGGAAAGCAGGGGCCTGCTGAAGGCGAGTGTTCGCAAGAAGTTTTGGAGCTTCAATCAAGAGCCTTTGGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 map04112
Pfam Domains
Protein Families
AAA_2 ClpB_D2-small

Protein Analysis

567

Amino Acids

61.65

Weight (kDa)

6.07

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_2 PF07724 197 - 414 4.5e-28 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 200 - 289 7.5e-06 AAA domain (dynein-related subfamily)
AAA PF00004 201 - 319 5.8e-13 ATPase family associated with various cellular activities (AAA)
ClpB_D2-small PF10431 421 - 490 1.6e-10 C-terminal, D2-small domain, of ClpB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 740
AccI GTMKAC 3 cut(s) 840, 1003, 1501
AccIII TCCGGA 1 cut(s) 101
AclWI GGATC 1 cut(s) 1278
AcoI YGGCCR 2 cut(s) 445, 892
AcsI RAATTY 3 cut(s) 179, 1220, 1566
AcuI CTGAAG 1 cut(s) 1668
AcyI GRCGYC 2 cut(s) 915, 1149
AfaI GTAC 2 cut(s) 197, 1322
AfiI CCNNNNNNNGG 4 cut(s) 374, 971, 1556, 1649
AgeI ACCGGT 1 cut(s) 1412
AgsI TTSAA 2 cut(s) 725, 1682
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 26, 303, 1549
AjuI GAANNNNNNNTTGG 2 cut(s) 1515, 1547
AloI GAACNNNNNNTCC 2 cut(s) 1098, 1130
AluBI AGCT 7 cut(s) 361, 803, 824, 882, 977, 1529, 1678
AluI AGCT 7 cut(s) 361, 803, 824, 882, 977, 1529, 1678
Alw21I GWGCWC 5 cut(s) 26, 979, 1111, 1420, 1626
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 1278
Ama87I CYCGRG 2 cut(s) 386, 1419
Aor13HI TCCGGA 1 cut(s) 101
AoxI GGCC 7 cut(s) 283, 306, 350, 445, 892, 1207, 1640
ApeKI GCWGC 5 cut(s) 151, 154, 157, 174, 821
ApoI RAATTY 3 cut(s) 179, 1220, 1566
ArsI GACNNNNNNTTYG 2 cut(s) 1115, 1147
AsiGI ACCGGT 1 cut(s) 1412
AspLEI GCGC 2 cut(s) 74, 1233
AspS9I GGNCC 7 cut(s) 30, 250, 283, 614, 1131, 1285, 1640
AsuHPI GGTGA 2 cut(s) 1007, 1589
AvaI CYCGRG 2 cut(s) 386, 1419
AvaII GGWCC 5 cut(s) 30, 250, 614, 1131, 1285
BaeGI GKGCMC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 979
BauI CACGAG 1 cut(s) 990
BbsI GAAGAC 2 cut(s) 638, 1070
Bbv12I GWGCWC 5 cut(s) 26, 979, 1111, 1420, 1626
BbvI GCAGC 5 cut(s) 163, 166, 169, 186, 833
BccI CCATC 2 cut(s) 361, 1003
BceAI ACGGC 2 cut(s) 293, 521
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 367, 401
BciT130I CCWGG 3 cut(s) 28, 305, 1551
BciVI GTATCC 2 cut(s) 109, 1006
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 2 cut(s) 123, 653
BfmI CTRYAG 1 cut(s) 1179
BfoI RGCGCY 2 cut(s) 75, 1234
BfuAI ACCTGC 1 cut(s) 740
BfuI GTATCC 2 cut(s) 109, 1006
BglII AGATCT 1 cut(s) 1192
Bme1390I CCNGG 3 cut(s) 28, 305, 1551
Bme18I GGWCC 5 cut(s) 30, 250, 614, 1131, 1285
BmeT110I CYCGRG 2 cut(s) 386, 1419
BmgBI CACGTC 1 cut(s) 217
BmgT120I GGNCC 7 cut(s) 30, 250, 283, 614, 1131, 1285, 1640
BmiI GGNNCC 5 cut(s) 615, 616, 949, 1473, 1641
BmrFI CCNGG 3 cut(s) 28, 305, 1551
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 6 cut(s) 221, 679, 736, 994, 1360, 1534
BmuI ACTGGG 1 cut(s) 303
BoxI GACNNNNGTC 1 cut(s) 271
BpiI GAAGAC 2 cut(s) 638, 1070
BpmI CTGGAG 2 cut(s) 927, 1533
BsaHI GRCGYC 2 cut(s) 915, 1149
BsaJI CCNNGG 1 cut(s) 408
BsaWI WCCGGW 2 cut(s) 101, 1412
BsaXI ACNNNNNCTCC 6 cut(s) 753, 783, 900, 930, 1098, 1128
Bsc4I CCNNNNNNNGG 4 cut(s) 374, 971, 1556, 1649
Bse118I RCCGGY 2 cut(s) 62, 1412
Bse1I ACTGG 4 cut(s) 298, 625, 1112, 1134
Bse3DI GCAATG 5 cut(s) 604, 681, 926, 1404, 1467
BseAI TCCGGA 1 cut(s) 101
BseBI CCWGG 3 cut(s) 28, 305, 1551
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 4 cut(s) 353, 985, 1163, 1549
BseLI CCNNNNNNNGG 4 cut(s) 374, 971, 1556, 1649
BseMI GCAATG 5 cut(s) 604, 681, 926, 1404, 1467
BseMII CTCAG 5 cut(s) 28, 795, 839, 867, 1367
BseNI ACTGG 4 cut(s) 298, 625, 1112, 1134
BseRI GAGGAG 4 cut(s) 201, 204, 353, 1572
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 5 cut(s) 163, 166, 169, 186, 833
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 2 cut(s) 153, 193
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 7 cut(s) 285, 308, 352, 447, 894, 1209, 1642
BshTI ACCGGT 1 cut(s) 1412
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 5 cut(s) 26, 979, 1111, 1420, 1626
BsiHKCI CYCGRG 2 cut(s) 386, 1419
BsiSI CCGG 3 cut(s) 63, 102, 1413
BslFI GGGAC 2 cut(s) 210, 600
BslI CCNNNNNNNGG 4 cut(s) 374, 971, 1556, 1649
BsmAI GTCTC 1 cut(s) 284
BsmFI GGGAC 2 cut(s) 210, 600
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 7 cut(s) 285, 308, 352, 447, 894, 1209, 1642
BsoBI CYCGRG 2 cut(s) 386, 1419
Bsp1286I GDGCHC 6 cut(s) 26, 323, 979, 1111, 1420, 1626
Bsp13I TCCGGA 1 cut(s) 101
Bsp143I GATC 2 cut(s) 1192, 1270
BspANI GGCC 7 cut(s) 285, 308, 352, 447, 894, 1209, 1642
BspCNI CTCAG 5 cut(s) 27, 796, 838, 868, 1368
BspEI TCCGGA 1 cut(s) 101
BspHI TCATGA 1 cut(s) 1603
BspLI GGNNCC 5 cut(s) 615, 616, 949, 1473, 1641
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 1 cut(s) 1278
BspQI GCTCTTC 1 cut(s) 587
BsrDI GCAATG 5 cut(s) 604, 681, 926, 1404, 1467
BsrFI RCCGGY 2 cut(s) 62, 1412
BsrI ACTGG 4 cut(s) 298, 625, 1112, 1134
BssAI RCCGGY 2 cut(s) 62, 1412
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 2 cut(s) 1192, 1270
BssNAI GTATAC 2 cut(s) 1004, 1502
BssNI GRCGYC 2 cut(s) 915, 1149
BssSI CACGAG 1 cut(s) 990
BssT1I CCWWGG 1 cut(s) 408
Bst1107I GTATAC 2 cut(s) 1004, 1502
Bst2BI CACGAG 1 cut(s) 990
Bst2UI CCWGG 3 cut(s) 28, 305, 1551
Bst4CI ACNGT 5 cut(s) 224, 563, 721, 952, 1320
Bst6I CTCTTC 2 cut(s) 100, 587
BstACI GRCGYC 2 cut(s) 915, 1149
BstC8I GCNNGC 2 cut(s) 64, 1644
BstDEI CTNAG 6 cut(s) 14, 804, 825, 876, 1376, 1571
BstENI CCTNNNNNAGG 3 cut(s) 372, 969, 1647
BstF5I GGATG 4 cut(s) 353, 985, 1163, 1549
BstH2I RGCGCY 2 cut(s) 75, 1234
BstHHI GCGC 2 cut(s) 74, 1233
BstKTI GATC 2 cut(s) 1195, 1273
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 2 cut(s) 1192, 1270
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 8 cut(s) 59, 119, 157, 160, 163, 327, 358, 1394
BstNI CCWGG 3 cut(s) 28, 305, 1551
BstNSI RCATGY 1 cut(s) 1508
BstPAI GACNNNNGTC 1 cut(s) 271
BstSCI CCNGG 3 cut(s) 26, 303, 1549
BstSFI CTRYAG 1 cut(s) 1179
BstSLI GKGCMC 1 cut(s) 323
BstV1I GCAGC 5 cut(s) 163, 166, 169, 186, 833
BstV2I GAAGAC 2 cut(s) 638, 1070
BstX2I RGATCY 1 cut(s) 1192
BstYI RGATCY 1 cut(s) 1192
BstZ17I GTATAC 2 cut(s) 1004, 1502
BsuI GTATCC 2 cut(s) 109, 1006
BsuRI GGCC 7 cut(s) 285, 308, 352, 447, 894, 1209, 1642
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 4 cut(s) 353, 985, 1163, 1549
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 7 cut(s) 117, 568, 618, 717, 1141, 1373, 1545
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 64, 1644
CciI TCATGA 1 cut(s) 1603
CfoI GCGC 2 cut(s) 74, 1233
Cfr10I RCCGGY 2 cut(s) 62, 1412
Cfr13I GGNCC 7 cut(s) 30, 250, 283, 614, 1131, 1285, 1640
CseI GACGC 2 cut(s) 904, 1157
CsiI ACCWGGT 1 cut(s) 26
Csp6I GTAC 2 cut(s) 196, 1321
CspAI ACCGGT 1 cut(s) 1412
CviAII CATG 5 cut(s) 1126, 1339, 1505, 1604, 1627
CviQI GTAC 2 cut(s) 196, 1321
DdeI CTNAG 6 cut(s) 14, 804, 825, 876, 1376, 1571
DpnI GATC 2 cut(s) 1194, 1272
DpnII GATC 2 cut(s) 1192, 1270
DraI TTTAAA 1 cut(s) 1263
EaeI YGGCCR 2 cut(s) 445, 892
Eam1104I CTCTTC 2 cut(s) 100, 587
EarI CTCTTC 2 cut(s) 100, 587
Ecl136II GAGCTC 1 cut(s) 977
Eco130I CCWWGG 1 cut(s) 408
Eco24I GRGCYC 1 cut(s) 979
Eco32I GATATC 1 cut(s) 1024
Eco47I GGWCC 5 cut(s) 30, 250, 614, 1131, 1285
Eco53kI GAGCTC 1 cut(s) 977
Eco57I CTGAAG 1 cut(s) 1668
Eco88I CYCGRG 2 cut(s) 386, 1419
EcoICRI GAGCTC 1 cut(s) 977
EcoNI CCTNNNNNAGG 3 cut(s) 372, 969, 1647
EcoO109I RGGNCCY 4 cut(s) 30, 614, 1285, 1640
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 3 cut(s) 26, 303, 1549
EcoRV GATATC 1 cut(s) 1024
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 979
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 5 cut(s) 1129, 1342, 1508, 1607, 1630
FaqI GGGAC 2 cut(s) 210, 600
FatI CATG 5 cut(s) 1125, 1338, 1504, 1603, 1626
FauNDI CATATG 1 cut(s) 1034
FblI GTMKAC 3 cut(s) 840, 1003, 1501
FokI GGATG 4 cut(s) 340, 972, 1150, 1556
FriOI GRGCYC 1 cut(s) 979
FspBI CTAG 2 cut(s) 123, 653
GlaI GCGC 2 cut(s) 73, 1232
GsaI CCCAGC 1 cut(s) 151
GsuI CTGGAG 2 cut(s) 927, 1533
HaeII RGCGCY 2 cut(s) 75, 1234
HaeIII GGCC 7 cut(s) 285, 308, 352, 447, 894, 1209, 1642
HapII CCGG 3 cut(s) 63, 102, 1413
HgaI GACGC 2 cut(s) 904, 1157
HhaI GCGC 2 cut(s) 74, 1233
Hin1I GRCGYC 2 cut(s) 915, 1149
Hin1II CATG 5 cut(s) 1129, 1342, 1508, 1607, 1630
Hin6I GCGC 2 cut(s) 72, 1231
HinP1I GCGC 2 cut(s) 72, 1231
HinfI GANTC 8 cut(s) 90, 313, 403, 539, 575, 773, 1088, 1175
HpaII CCGG 3 cut(s) 63, 102, 1413
HphI GGTGA 2 cut(s) 1007, 1589
Hpy166II GTNNAC 7 cut(s) 220, 301, 484, 841, 1004, 1316, 1502
Hpy188I TCNGA 5 cut(s) 17, 185, 828, 981, 1075
Hpy8I GTNNAC 7 cut(s) 220, 301, 484, 841, 1004, 1316, 1502
HpyAV CCTTC 7 cut(s) 349, 519, 865, 938, 1387, 1574, 1643
HpyCH4III ACNGT 5 cut(s) 224, 563, 721, 952, 1320
HpyCH4IV ACGT 1 cut(s) 216
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 119, 157, 160, 163, 327, 358, 1394
HpyF3I CTNAG 6 cut(s) 14, 804, 825, 876, 1376, 1571
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 2 cut(s) 915, 1149
Hsp92II CATG 5 cut(s) 1129, 1342, 1508, 1607, 1630
HspAI GCGC 2 cut(s) 72, 1231
KflI GGGWCCC 1 cut(s) 614
Kpn2I TCCGGA 1 cut(s) 101
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Kzo9I GATC 2 cut(s) 1192, 1270
LguI GCTCTTC 1 cut(s) 587
LmnI GCTCC 7 cut(s) 366, 974, 1106, 1552, 1559, 1591, 1675
Lsp1109I GCAGC 5 cut(s) 163, 166, 169, 186, 833
LweI GCATC 6 cut(s) 221, 679, 736, 994, 1360, 1534
MabI ACCWGGT 1 cut(s) 26
MaeI CTAG 2 cut(s) 123, 653
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 115, 1156
MalI GATC 2 cut(s) 1194, 1272
MboI GATC 2 cut(s) 1192, 1270
MboII GAAGA 9 cut(s) 117, 504, 604, 643, 776, 1075, 1083, 1535, 1592
MflI RGATCY 1 cut(s) 1192
MhlI GDGCHC 6 cut(s) 26, 323, 979, 1111, 1420, 1626
MluCI AATT 6 cut(s) 179, 325, 1220, 1352, 1566, 1595
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 5 cut(s) 567, 739, 921, 943, 1152
MroI TCCGGA 1 cut(s) 101
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 5 cut(s) 608, 701, 884, 957, 1262
MslI CAYNNNNRTG 1 cut(s) 990
MspA1I CMGCKG 2 cut(s) 160, 271
MspI CCGG 3 cut(s) 63, 102, 1413
MspR9I CCNGG 3 cut(s) 28, 305, 1551
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 3 cut(s) 28, 305, 1551
MwoI GCNNNNNNNGC 8 cut(s) 59, 119, 157, 160, 163, 327, 358, 1394
NaeI GCCGGC 1 cut(s) 64
NdeI CATATG 1 cut(s) 1034
NdeII GATC 2 cut(s) 1192, 1270
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 5 cut(s) 1129, 1342, 1508, 1607, 1630
NlaIV GGNNCC 5 cut(s) 615, 616, 949, 1473, 1641
NmeAIII GCCGAG 2 cut(s) 311, 920
NmuCI GTSAC 2 cut(s) 115, 1156
NspI RCATGY 1 cut(s) 1508
PaeR7I CTCGAG 2 cut(s) 386, 1419
PagI TCATGA 1 cut(s) 1603
PciSI GCTCTTC 1 cut(s) 587
PctI GAATGC 1 cut(s) 508
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 7 cut(s) 90, 313, 539, 575, 773, 1088, 1175
PfoI TCCNGGA 1 cut(s) 1549
PinAI ACCGGT 1 cut(s) 1412
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PpuMI RGGWCCY 3 cut(s) 30, 614, 1285
PshAI GACNNNNGTC 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 979
Psp5II RGGWCCY 3 cut(s) 30, 614, 1285
Psp6I CCWGG 3 cut(s) 26, 303, 1549
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 3 cut(s) 26, 303, 1549
PspN4I GGNNCC 5 cut(s) 615, 616, 949, 1473, 1641
PspPI GGNCC 7 cut(s) 30, 250, 283, 614, 1131, 1285, 1640
PspPPI RGGWCCY 3 cut(s) 30, 614, 1285
PspXI VCTCGAGB 1 cut(s) 1419
PsrI GAACNNNNNNTAC 2 cut(s) 945, 977
PsuI RGATCY 1 cut(s) 1192
RsaI GTAC 2 cut(s) 197, 1322
RsaNI GTAC 2 cut(s) 196, 1321
RseI CAYNNNNRTG 1 cut(s) 990
SacI GAGCTC 1 cut(s) 979
SapI GCTCTTC 1 cut(s) 587
SaqAI TTAA 5 cut(s) 608, 701, 884, 957, 1262
Sau3AI GATC 2 cut(s) 1192, 1270
Sau96I GGNCC 7 cut(s) 30, 250, 283, 614, 1131, 1285, 1640
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 3 cut(s) 28, 305, 1551
SduI GDGCHC 6 cut(s) 26, 323, 979, 1111, 1420, 1626
SexAI ACCWGGT 1 cut(s) 26
SfaNI GCATC 6 cut(s) 221, 679, 736, 994, 1360, 1534
SfcI CTRYAG 1 cut(s) 1179
Sfr274I CTCGAG 2 cut(s) 386, 1419
SgrAI CRCCGGYG 1 cut(s) 1412
SinI GGWCC 5 cut(s) 30, 250, 614, 1131, 1285
SlaI CTCGAG 2 cut(s) 386, 1419
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 2 cut(s) 386, 1419
SmoI CTYRAG 2 cut(s) 386, 1419
Sse9I AATT 6 cut(s) 179, 325, 1220, 1352, 1566, 1595
SspI AATATT 3 cut(s) 728, 780, 889
SspMI CTAG 2 cut(s) 123, 653
SstI GAGCTC 1 cut(s) 979
StyD4I CCNGG 3 cut(s) 26, 303, 1549
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 5 cut(s) 224, 563, 721, 952, 1320
TaiI ACGT 1 cut(s) 219
TaqI TCGA 7 cut(s) 236, 260, 275, 387, 1420, 1467, 1616
TasI AATT 6 cut(s) 179, 325, 1220, 1352, 1566, 1595
TatI WGTACW 1 cut(s) 1320
TauI GCSGC 5 cut(s) 56, 59, 62, 163, 166
TfiI GAWTC 7 cut(s) 90, 313, 539, 575, 773, 1088, 1175
Tru1I TTAA 5 cut(s) 608, 701, 884, 957, 1262
Tru9I TTAA 5 cut(s) 608, 701, 884, 957, 1262
TscAI CASTG 7 cut(s) 124, 568, 625, 724, 1141, 1380, 1545
TseFI GTSAC 2 cut(s) 115, 1156
TseI GCWGC 5 cut(s) 151, 154, 157, 174, 821
Tsp45I GTSAC 2 cut(s) 115, 1156
TspDTI ATGAA 6 cut(s) 864, 1021, 1355, 1536, 1592, 1620
TspGWI ACGGA 3 cut(s) 85, 663, 812
TspRI CASTG 7 cut(s) 124, 568, 625, 724, 1141, 1380, 1545
VpaK11BI GGWCC 5 cut(s) 30, 250, 614, 1131, 1285
XagI CCTNNNNNAGG 3 cut(s) 372, 969, 1647
XapI RAATTY 3 cut(s) 179, 1220, 1566
XceI RCATGY 1 cut(s) 1508
XhoI CTCGAG 2 cut(s) 386, 1419
XmiI GTMKAC 3 cut(s) 840, 1003, 1501
XspI CTAG 2 cut(s) 123, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.