Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003035

Physical Location & Seq

Genomic Coordinates Forward (+)

31539197 .. 31545608

Gene Structure 6412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1791 bp

ATGTTTCACACTCTCAGATTGAGCACAAGGTCCTCCCTCACACGACTAATCGCCGCCGCCGCCGCCGCTGCCGGCACAAGCGCCACCGCAACCACCAGAATCTCCCTATCCGGAAGAGTTGCTGTCACTGCTAGTGGTGATGGTGGTGGTGGTGGTGCAGAAGCAGCACAACCCCAGCAGCCGCAGCAGCAGCGGCGGCACAAGTGCGGCGAAGTCGGAGGAGGAGGAGGAGAGTACGAGAGCATAAGGGCGGACGTGAACTGTCCCCGATGCTCGAAGCAAATGGCGGTCCTGTTCTCGACCCGACCGCTGTCGATTACGGGCCGAGAGACTGGGCTTTACCAGGCCGTGAATCTGTGCCCGAATTGCAACACCGCCTTCTATTTCAGGCCATCCAAGCTCCTCCCCTTGCAAGGCACTTTCCTCGAGATTGGTAGGCTTAAGGCGCCTCCCACTCACGCCCCTCATCATTCCACTTCCAATTCCCATTCCGATTCCGATTCCGGTTCCGGCCAGAAAGACCTCTTGACTCCCAAGGAGATACGTAAGGCTCTTGATGACTTTGTTATCGGCCAAGAAAGAGCCAAAAAGGTGCTTTCGGTTGCGGTTTATAACCACTACAAAAGAATACGGCATTCTTCCCAACAGAGAAGGTCCGGTGTCGATTCAGTTGATTGTAAGCCTCACAGTGTTGATACTGATTCTGTTGAGTTGGAGAAGAGCAATGTATTATTGATGGGTCCCACTGGTTCAGGGAAGACTTTACTTGCAAAAACACTAGCCCGTGTTGTGAATGTTCCATTTGCCATTGCTGATGCAACAACATTAACACAGGCAGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAGACTTCTTATGGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGATGAAGTTGATAAGATAATAAAGAAGGCTGAGAGCTTAAATATTGGCCGAGATGTGTCTGGAGAGGGCGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACCGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAGCATCCTCGTGGTGATAGTATACAGATGGATACAAAGGATATCCTTTTCATATGTGGTGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCAAACATGAGGTCCAGCGGATTGACTGACGCCATAGTGACATCATCCTTGTTGGAATCTGTAGACAGTGGAGATCTTATTGCTTATGGCCTGATACCTGAATTTGTTGGGCGCTTTCCTATTTTAGTGAGTTTGTCATCTTTAAACGAGGATCAACTTGTTCAGGTCCTCACAGAACCTAAAAATGCTCTTGGTAAACAGTACAAGATGATGTTTGACATGAACAATGTCAAATTACATTTTACTGACGATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCTCGAGGTTTGAGAGCTATATTGGAGAATATTCTTACAGAAGCAATGTTTGAGGTCCCAGACATCAAGACAGAAACCAATAGTATACATGCAGTTCTGGTTGATGAAGAAGCTGTTGGGTCAGTGGATGCTCCAGGACGAGGAGCAAAAATTCTTAGTGGTGAAGGCATAGTGGAGCAATTTCTTCATGAAACAAAGTCGAGAGAGCACATGGGAAAGCAGGGGCCTGCTGAAGGCGCATGTTCGCAAGAAGTTTTGGAGCTTCAATCAAGAGCTTTTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

597

Amino Acids

64.05

Weight (kDa)

6.75

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	239 - 443	3.7e-29	AAA domain (Cdc48 subfamily)
AAA	PF00004	243 - 348	1.1e-13	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	450 - 519	2.1e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49840 AT5G49840 AT5G49840 AT5G49840
fragaria_vesca	FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740
malus_domestica	MD08G1248400.v1.1
prunus_persica	Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1
pyrus_communis	pycom08g21520
rosa_chinensis	RchiOBHm_Chr7g0219511
rosa_laevigata	RLG00000002286
rosa_multiflora	Rmu_sc0003047.1_g000013
rosa_roxburghii	Rroxscaffold_3G00240000
rosa_rugosa	Rorug07G0185800 Rorug07G0185900
rosa_samantha	Rh7AG328400 Rh7BG318900 Rh7CG345800 Rh7DG324800
rosa_wichuraiana	Rw7G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	827
AccB1I	GGYRCC	1 cut(s)	445
AccI	GTMKAC	4 cut(s)	927, 1090, 1269, 1588
AccIII	TCCGGA	1 cut(s)	110
AclWI	GGATC	1 cut(s)	1365
AcoI	YGGCCR	3 cut(s)	511, 571, 979
AcsI	RAATTY	2 cut(s)	1307, 1653
AcuI	CTGAAG	1 cut(s)	1755
AcyI	GRCGYC	3 cut(s)	446, 1002, 1236
AfaI	GTAC	2 cut(s)	236, 1409
AfiI	CCNNNNNNNGG	4 cut(s)	413, 1058, 1643, 1736
AflII	CTTAAG	1 cut(s)	440
AgeI	ACCGGT	1 cut(s)	1499
AgsI	TTSAA	1 cut(s)	1769
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	342, 1636
AjuI	GAANNNNNNNTTGG	2 cut(s)	1602, 1634
AloI	GAACNNNNNNTCC	2 cut(s)	1185, 1217
AluBI	AGCT	9 cut(s)	400, 890, 911, 969, 1064, 1520, 1616, 1765, 1778
AluI	AGCT	9 cut(s)	400, 890, 911, 969, 1064, 1520, 1616, 1765, 1778
Alw21I	GWGCWC	5 cut(s)	26, 1066, 1198, 1507, 1713
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	1365
Ama87I	CYCGRG	2 cut(s)	425, 1506
Aor13HI	TCCGGA	1 cut(s)	110
AoxI	GGCC	8 cut(s)	322, 345, 389, 511, 571, 979, 1294, 1727
ApeKI	GCWGC	7 cut(s)	68, 164, 178, 184, 187, 190, 908
ApoI	RAATTY	2 cut(s)	1307, 1653
ArsI	GACNNNNNNTTYG	2 cut(s)	1202, 1234
AsiGI	ACCGGT	1 cut(s)	1499
AspLEI	GCGC	4 cut(s)	83, 448, 1320, 1742
AspS9I	GGNCC	9 cut(s)	30, 289, 322, 654, 740, 1218, 1372, 1558, 1727
AsuHPI	GGTGA	3 cut(s)	149, 1094, 1676
AvaI	CYCGRG	2 cut(s)	425, 1506
AvaII	GGWCC	7 cut(s)	30, 289, 654, 740, 1218, 1372, 1558
BaeGI	GKGCMC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	1066
BauI	CACGAG	1 cut(s)	1077
BbsI	GAAGAC	2 cut(s)	764, 1157
Bbv12I	GWGCWC	5 cut(s)	26, 1066, 1198, 1507, 1713
BbvI	GCAGC	7 cut(s)	55, 176, 190, 196, 199, 202, 920
BccI	CCATC	4 cut(s)	134, 400, 730, 1090
BceAI	ACGGC	2 cut(s)	332, 647
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BciT130I	CCWGG	2 cut(s)	344, 1638
BciVI	GTATCC	1 cut(s)	1093
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	2 cut(s)	132, 779
BfmI	CTRYAG	1 cut(s)	1266
BfoI	RGCGCY	3 cut(s)	84, 449, 1321
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	827
BfuI	GTATCC	1 cut(s)	1093
BglII	AGATCT	1 cut(s)	1279
Bme1390I	CCNGG	2 cut(s)	344, 1638
Bme18I	GGWCC	7 cut(s)	30, 289, 654, 740, 1218, 1372, 1558
BmeT110I	CYCGRG	2 cut(s)	425, 1506
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	9 cut(s)	30, 289, 322, 654, 740, 1218, 1372, 1558, 1727
BmiI	GGNNCC	7 cut(s)	447, 508, 741, 742, 1036, 1560, 1728
BmrFI	CCNGG	2 cut(s)	344, 1638
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	5 cut(s)	260, 805, 1081, 1447, 1621
BmuI	ACTGGG	1 cut(s)	342
BoxI	GACNNNNGTC	1 cut(s)	310
BpiI	GAAGAC	2 cut(s)	764, 1157
BpmI	CTGGAG	2 cut(s)	1014, 1620
BsaAI	YACGTR	1 cut(s)	545
BsaHI	GRCGYC	3 cut(s)	446, 1002, 1236
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	4 cut(s)	110, 503, 656, 1499
BsaXI	ACNNNNNCTCC	6 cut(s)	840, 870, 987, 1017, 1185, 1215
Bsc4I	CCNNNNNNNGG	4 cut(s)	413, 1058, 1643, 1736
Bse118I	RCCGGY	2 cut(s)	71, 1499
Bse1I	ACTGG	3 cut(s)	337, 751, 1199
Bse3DI	GCAATG	5 cut(s)	730, 807, 1013, 1491, 1554
BseAI	TCCGGA	1 cut(s)	110
BseBI	CCWGG	2 cut(s)	344, 1638
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	4 cut(s)	392, 1072, 1250, 1636
BseLI	CCNNNNNNNGG	4 cut(s)	413, 1058, 1643, 1736
BseMI	GCAATG	5 cut(s)	730, 807, 1013, 1491, 1554
BseMII	CTCAG	5 cut(s)	28, 882, 926, 954, 1454
BseNI	ACTGG	3 cut(s)	337, 751, 1199
BseRI	GAGGAG	6 cut(s)	234, 237, 240, 243, 392, 1659
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	7 cut(s)	55, 176, 190, 196, 199, 202, 920
BseYI	CCCAGC	1 cut(s)	174
BsgI	GTGCAG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	8 cut(s)	324, 347, 391, 513, 573, 981, 1296, 1729
BshNI	GGYRCC	1 cut(s)	445
BshTI	ACCGGT	1 cut(s)	1499
BsiEI	CGRYCG	1 cut(s)	308
BsiHKAI	GWGCWC	5 cut(s)	26, 1066, 1198, 1507, 1713
BsiHKCI	CYCGRG	2 cut(s)	425, 1506
BsiSI	CCGG	6 cut(s)	72, 111, 504, 510, 657, 1500
BslFI	GGGAC	3 cut(s)	249, 726, 1544
BslI	CCNNNNNNNGG	4 cut(s)	413, 1058, 1643, 1736
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	3 cut(s)	249, 726, 1544
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	8 cut(s)	324, 347, 391, 513, 573, 981, 1296, 1729
BsoBI	CYCGRG	2 cut(s)	425, 1506
Bsp1286I	GDGCHC	6 cut(s)	26, 362, 1066, 1198, 1507, 1713
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	1279, 1357
BspANI	GGCC	8 cut(s)	324, 347, 391, 513, 573, 981, 1296, 1729
BspCNI	CTCAG	5 cut(s)	27, 883, 925, 955, 1455
BspEI	TCCGGA	1 cut(s)	110
BspHI	TCATGA	1 cut(s)	1690
BspLI	GGNNCC	7 cut(s)	447, 508, 741, 742, 1036, 1560, 1728
BspMI	ACCTGC	1 cut(s)	827
BspPI	GGATC	1 cut(s)	1365
BspQI	GCTCTTC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	5 cut(s)	730, 807, 1013, 1491, 1554
BsrFI	RCCGGY	2 cut(s)	71, 1499
BsrI	ACTGG	3 cut(s)	337, 751, 1199
BssAI	RCCGGY	2 cut(s)	71, 1499
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	2 cut(s)	1279, 1357
BssNAI	GTATAC	2 cut(s)	1091, 1589
BssNI	GRCGYC	3 cut(s)	446, 1002, 1236
BssSI	CACGAG	1 cut(s)	1077
BssT1I	CCWWGG	1 cut(s)	534
Bst1107I	GTATAC	2 cut(s)	1091, 1589
Bst2BI	CACGAG	1 cut(s)	1077
Bst2UI	CCWGG	2 cut(s)	344, 1638
Bst4CI	ACNGT	5 cut(s)	263, 689, 1039, 1274, 1407
Bst6I	CTCTTC	2 cut(s)	109, 713
BstACI	GRCGYC	3 cut(s)	446, 1002, 1236
BstAFI	CTTAAG	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	73, 1731
BstDEI	CTNAG	6 cut(s)	14, 891, 912, 963, 1463, 1658
BstENI	CCTNNNNNAGG	2 cut(s)	1056, 1734
BstF5I	GGATG	4 cut(s)	392, 1072, 1250, 1636
BstH2I	RGCGCY	3 cut(s)	84, 449, 1321
BstHHI	GCGC	4 cut(s)	83, 448, 1320, 1742
BstKTI	GATC	2 cut(s)	1282, 1360
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	1279, 1357
BstMCI	CGRYCG	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	344, 1638
BstNSI	RCATGY	2 cut(s)	1595, 1746
BstPAI	GACNNNNGTC	1 cut(s)	310
BstSCI	CCNGG	2 cut(s)	342, 1636
BstSFI	CTRYAG	1 cut(s)	1266
BstSLI	GKGCMC	1 cut(s)	362
BstSNI	TACGTA	1 cut(s)	545
BstV1I	GCAGC	7 cut(s)	55, 176, 190, 196, 199, 202, 920
BstV2I	GAAGAC	2 cut(s)	764, 1157
BstX2I	RGATCY	1 cut(s)	1279
BstYI	RGATCY	1 cut(s)	1279
BstZ17I	GTATAC	2 cut(s)	1091, 1589
BsuI	GTATCC	1 cut(s)	1093
BsuRI	GGCC	8 cut(s)	324, 347, 391, 513, 573, 981, 1296, 1729
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	4 cut(s)	392, 1072, 1250, 1636
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	6 cut(s)	126, 694, 744, 1279, 1460, 1632
BveI	ACCTGC	1 cut(s)	827
Cac8I	GCNNGC	2 cut(s)	73, 1731
CciI	TCATGA	1 cut(s)	1690
CfoI	GCGC	4 cut(s)	83, 448, 1320, 1742
Cfr10I	RCCGGY	2 cut(s)	71, 1499
Cfr13I	GGNCC	9 cut(s)	30, 289, 322, 654, 740, 1218, 1372, 1558, 1727
CseI	GACGC	2 cut(s)	991, 1244
Csp6I	GTAC	2 cut(s)	235, 1408
CspAI	ACCGGT	1 cut(s)	1499
CviAII	CATG	6 cut(s)	1213, 1426, 1592, 1691, 1714, 1743
CviQI	GTAC	2 cut(s)	235, 1408
DdeI	CTNAG	6 cut(s)	14, 891, 912, 963, 1463, 1658
DinI	GGCGCC	1 cut(s)	447
DpnI	GATC	2 cut(s)	1281, 1359
DpnII	GATC	2 cut(s)	1279, 1357
DraI	TTTAAA	1 cut(s)	1350
EaeI	YGGCCR	3 cut(s)	511, 571, 979
Eam1104I	CTCTTC	2 cut(s)	109, 713
EarI	CTCTTC	2 cut(s)	109, 713
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	1064
Eco105I	TACGTA	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	534
Eco24I	GRGCYC	1 cut(s)	1066
Eco32I	GATATC	1 cut(s)	1111
Eco47I	GGWCC	7 cut(s)	30, 289, 654, 740, 1218, 1372, 1558
Eco53kI	GAGCTC	1 cut(s)	1064
Eco57I	CTGAAG	1 cut(s)	1755
Eco88I	CYCGRG	2 cut(s)	425, 1506
EcoICRI	GAGCTC	1 cut(s)	1064
EcoNI	CCTNNNNNAGG	2 cut(s)	1056, 1734
EcoO109I	RGGNCCY	5 cut(s)	30, 740, 1372, 1558, 1727
EcoRII	CCWGG	2 cut(s)	342, 1636
EcoRV	GATATC	1 cut(s)	1111
EcoT14I	CCWWGG	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	1066
EgeI	GGCGCC	1 cut(s)	447
EheI	GGCGCC	1 cut(s)	447
ErhI	CCWWGG	1 cut(s)	534
FaeI	CATG	6 cut(s)	1216, 1429, 1595, 1694, 1717, 1746
FaqI	GGGAC	3 cut(s)	249, 726, 1544
FatI	CATG	6 cut(s)	1212, 1425, 1591, 1690, 1713, 1742
FauNDI	CATATG	1 cut(s)	1121
FblI	GTMKAC	4 cut(s)	927, 1090, 1269, 1588
FokI	GGATG	4 cut(s)	379, 1059, 1237, 1643
FriOI	GRGCYC	1 cut(s)	1066
FspBI	CTAG	2 cut(s)	132, 779
GlaI	GCGC	4 cut(s)	82, 447, 1319, 1741
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	2 cut(s)	1014, 1620
HaeII	RGCGCY	3 cut(s)	84, 449, 1321
HaeIII	GGCC	8 cut(s)	324, 347, 391, 513, 573, 981, 1296, 1729
HapII	CCGG	6 cut(s)	72, 111, 504, 510, 657, 1500
HgaI	GACGC	2 cut(s)	991, 1244
HhaI	GCGC	4 cut(s)	83, 448, 1320, 1742
Hin1I	GRCGYC	3 cut(s)	446, 1002, 1236
Hin1II	CATG	6 cut(s)	1216, 1429, 1595, 1694, 1717, 1746
Hin6I	GCGC	4 cut(s)	81, 446, 1318, 1740
HinP1I	GCGC	4 cut(s)	81, 446, 1318, 1740
HpaII	CCGG	6 cut(s)	72, 111, 504, 510, 657, 1500
HphI	GGTGA	3 cut(s)	149, 1094, 1676
Hpy166II	GTNNAC	6 cut(s)	259, 928, 1091, 1270, 1403, 1589
Hpy188I	TCNGA	7 cut(s)	17, 218, 493, 499, 915, 1068, 1162
Hpy8I	GTNNAC	6 cut(s)	259, 928, 1091, 1270, 1403, 1589
HpyAV	CCTTC	7 cut(s)	388, 645, 952, 1025, 1474, 1661, 1730
HpyCH4III	ACNGT	5 cut(s)	263, 689, 1039, 1274, 1407
HpyCH4IV	ACGT	2 cut(s)	255, 544
HpyCH4V	TGCA	9 cut(s)	158, 369, 412, 770, 818, 1208, 1460, 1475, 1595
HpyF3I	CTNAG	6 cut(s)	14, 891, 912, 963, 1463, 1658
HpySE526I	ACGT	2 cut(s)	255, 544
Hsp92I	GRCGYC	3 cut(s)	446, 1002, 1236
Hsp92II	CATG	6 cut(s)	1216, 1429, 1595, 1694, 1717, 1746
HspAI	GCGC	4 cut(s)	81, 446, 1318, 1740
KasI	GGCGCC	1 cut(s)	445
KflI	GGGWCCC	1 cut(s)	740
Kpn2I	TCCGGA	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	1279, 1357
LguI	GCTCTTC	1 cut(s)	713
LmnI	GCTCC	7 cut(s)	405, 1061, 1193, 1639, 1646, 1678, 1762
Lsp1109I	GCAGC	7 cut(s)	55, 176, 190, 196, 199, 202, 920
LweI	GCATC	5 cut(s)	260, 805, 1081, 1447, 1621
MaeI	CTAG	2 cut(s)	132, 779
MaeII	ACGT	2 cut(s)	255, 544
MaeIII	GTNAC	2 cut(s)	124, 1243
MalI	GATC	2 cut(s)	1281, 1359
MboI	GATC	2 cut(s)	1279, 1357
MboII	GAAGA	9 cut(s)	126, 630, 730, 769, 863, 1162, 1170, 1622, 1679
MflI	RGATCY	1 cut(s)	1279
MhlI	GDGCHC	6 cut(s)	26, 362, 1066, 1198, 1507, 1713
MluCI	AATT	6 cut(s)	364, 481, 1307, 1439, 1653, 1682
Mly113I	GGCGCC	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	523
MmeI	TCCRAC	6 cut(s)	196, 693, 826, 1008, 1030, 1239
MroI	TCCGGA	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	5 cut(s)	441, 827, 971, 1044, 1349
MslI	CAYNNNNRTG	1 cut(s)	1077
MspA1I	CMGCKG	4 cut(s)	68, 193, 310, 1224
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	6 cut(s)	72, 111, 504, 510, 657, 1500
MspR9I	CCNGG	2 cut(s)	344, 1638
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	2 cut(s)	344, 1638
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	446
NdeI	CATATG	1 cut(s)	1121
NdeII	GATC	2 cut(s)	1279, 1357
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	6 cut(s)	1216, 1429, 1595, 1694, 1717, 1746
NlaIV	GGNNCC	7 cut(s)	447, 508, 741, 742, 1036, 1560, 1728
NmeAIII	GCCGAG	2 cut(s)	350, 1007
NmuCI	GTSAC	2 cut(s)	124, 1243
NspI	RCATGY	2 cut(s)	1595, 1746
PaeR7I	CTCGAG	2 cut(s)	425, 1506
PagI	TCATGA	1 cut(s)	1690
PciSI	GCTCTTC	1 cut(s)	713
PctI	GAATGC	1 cut(s)	634
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	9 cut(s)	99, 352, 494, 500, 665, 701, 860, 1175, 1262
PfoI	TCCNGGA	1 cut(s)	1636
PinAI	ACCGGT	1 cut(s)	1499
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	545
PpuMI	RGGWCCY	4 cut(s)	30, 740, 1372, 1558
PshAI	GACNNNNGTC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	1066
Psp5II	RGGWCCY	4 cut(s)	30, 740, 1372, 1558
Psp6I	CCWGG	2 cut(s)	342, 1636
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	2 cut(s)	342, 1636
PspN4I	GGNNCC	7 cut(s)	447, 508, 741, 742, 1036, 1560, 1728
PspPI	GGNCC	9 cut(s)	30, 289, 322, 654, 740, 1218, 1372, 1558, 1727
PspPPI	RGGWCCY	4 cut(s)	30, 740, 1372, 1558
PspXI	VCTCGAGB	1 cut(s)	1506
PsrI	GAACNNNNNNTAC	2 cut(s)	1032, 1064
PsuI	RGATCY	1 cut(s)	1279
RsaI	GTAC	2 cut(s)	236, 1409
RsaNI	GTAC	2 cut(s)	235, 1408
RseI	CAYNNNNRTG	1 cut(s)	1077
SacI	GAGCTC	1 cut(s)	1066
SapI	GCTCTTC	1 cut(s)	713
SaqAI	TTAA	5 cut(s)	441, 827, 971, 1044, 1349
Sau3AI	GATC	2 cut(s)	1279, 1357
Sau96I	GGNCC	9 cut(s)	30, 289, 322, 654, 740, 1218, 1372, 1558, 1727
SchI	GAGTC	1 cut(s)	523
ScrFI	CCNGG	2 cut(s)	344, 1638
SduI	GDGCHC	6 cut(s)	26, 362, 1066, 1198, 1507, 1713
SfaNI	GCATC	5 cut(s)	260, 805, 1081, 1447, 1621
SfcI	CTRYAG	1 cut(s)	1266
SfoI	GGCGCC	1 cut(s)	447
Sfr274I	CTCGAG	2 cut(s)	425, 1506
SgrAI	CRCCGGYG	1 cut(s)	1499
SinI	GGWCC	7 cut(s)	30, 289, 654, 740, 1218, 1372, 1558
SlaI	CTCGAG	2 cut(s)	425, 1506
SmiMI	CAYNNNNRTG	1 cut(s)	1077
SmlI	CTYRAG	3 cut(s)	425, 440, 1506
SmoI	CTYRAG	3 cut(s)	425, 440, 1506
SnaBI	TACGTA	1 cut(s)	545
Sse9I	AATT	6 cut(s)	364, 481, 1307, 1439, 1653, 1682
SspDI	GGCGCC	1 cut(s)	445
SspI	AATATT	3 cut(s)	867, 976, 1534
SspMI	CTAG	2 cut(s)	132, 779
SstI	GAGCTC	1 cut(s)	1066
StyD4I	CCNGG	2 cut(s)	342, 1636
StyI	CCWWGG	1 cut(s)	534
TaaI	ACNGT	5 cut(s)	263, 689, 1039, 1274, 1407
TaiI	ACGT	2 cut(s)	258, 547
TaqI	TCGA	7 cut(s)	275, 299, 314, 426, 663, 1507, 1703
TasI	AATT	6 cut(s)	364, 481, 1307, 1439, 1653, 1682
TatI	WGTACW	1 cut(s)	1407
TauI	GCSGC	9 cut(s)	56, 59, 62, 65, 68, 184, 196, 199, 210
TfiI	GAWTC	9 cut(s)	99, 352, 494, 500, 665, 701, 860, 1175, 1262
Tru1I	TTAA	5 cut(s)	441, 827, 971, 1044, 1349
Tru9I	TTAA	5 cut(s)	441, 827, 971, 1044, 1349
TscAI	CASTG	6 cut(s)	133, 694, 751, 1279, 1467, 1632
TseFI	GTSAC	2 cut(s)	124, 1243
TseI	GCWGC	7 cut(s)	68, 164, 178, 184, 187, 190, 908
Tsp45I	GTSAC	2 cut(s)	124, 1243
TspDTI	ATGAA	6 cut(s)	951, 1108, 1442, 1623, 1679, 1707
TspRI	CASTG	6 cut(s)	133, 694, 751, 1279, 1467, 1632
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	7 cut(s)	30, 289, 654, 740, 1218, 1372, 1558
XagI	CCTNNNNNAGG	2 cut(s)	1056, 1734
XapI	RAATTY	2 cut(s)	1307, 1653
XceI	RCATGY	2 cut(s)	1595, 1746
XhoI	CTCGAG	2 cut(s)	425, 1506
XmiI	GTMKAC	4 cut(s)	927, 1090, 1269, 1588
XspI	CTAG	2 cut(s)	132, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.