Rorug07G0185900

ATP-dependent Clp protease ATP-binding subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
15621079 .. 15623087
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0185900.1

Sequence Viewer

Length: 1866 bp
ATGTCAATGGCTGTGGCGGCAAAAGGCGAAGGTCCAGCGATCGGAATCGATCTTGGAACAACTTACTCATGCGTTGGCGTTTGGCAACACGGGCGCGTTGAAATCATAACCAATGATCAGGGCAACAGAATAACACCGTCATATGTTGCTTTTACAAACACTGGGCGTTTAATTGGTGATGCCGCCAAGAACCAAGTTTCAACGAACCCCTTCAACACTGTTTTTGATGCAAAGCGCTTGATTGGAAGAAGATTTAGTGATGTAAATGTCAAAAATGACATGAAATTATGGCCTTTTGAGGTTCGTGGAGTCGGGGACAAACCTATGATTATGATCAATTATAAGAATGAAAAAAAGCAGTTTGCCGCTGAGGAGATATCTGCAATGGTTCTCAATAAGATGCGTGAAATAGCAGAGGCCTACATCGGATCAACGGTAAAGAATGTCGTTATCACTGTCCCAGCATACTTTAATGACTTACAACGTCAGGCTACAAAGGATGCCGGTGTAATTGCAGGAATGAATGTTATTCGTATTATCAACGAGCCAACAGCTGCAGCCATTGCCTACGGTCTTGATAGAGAAGGCACCAATATTGCTGGAAAAAACGTTCTTATTTTTGATCTTGGTGGTGGTACTTTTGATGTTTCCCTTCTTAAGATTGAAGAAGGTATTTTTGAGGTGAAAGCTATAGCTGGTGATACTCATCTTGGGGGTGAAGATTTTGATAATAGAATGGTGAACTATTTTGTACAAGAGTTTCGAAAGAAGCACGAAAAGGACATTAGTAATAACGCCACAGCACTAAGAAGATTGAGAACATCTTGTGAGAGAGCAAAGAGAACTCTTTCTTCCACTACGCAAACCACCATTGAGATTGATTCTTTATTCGAAGGTATTGACTTTCACTCGACTATAACGAGAGCAAAATTTGAAGAGATCAACTTGGATCTATTTTCCAAATGTATGGAGCCTGTGAAACAATGTTTGAGAGATGCTAAAATGGACAAGAGCATTGTTGATGATGTTGTTCTTGTTGGTGGATCTACCAGAATTCCCAAGGTACAACAGCTATTGCAAGACTTATTTGATGGCAAGGAGCTTTGCAAAAGTATCAATCCTGATGAAGCAGTTGCATATGGTGCCTCCATTCAAGCTGTAATTTTGAACGGTGAAGAAAATATCGAGAAGGTTCAGGACTTGCTCTTGTTGGATGTCACTCCCTTTTCCCTTGGTGCAGAGCGTTTTGATGGAGAGATGAAGGTTGTCGTCCCAAGAAACACTACCATCCCCACTAAGAAAGAAAAAGATGTGACAAATGTCGAAGCGGGACAAGTATGCATGGAGTTTAAAGTGTACGAGGGTGAAAGCAGAGTAGCTAAAGATAACAGATTGCTGGGTATATTTGATCTCAAAGGCATCCGTCCTGCTCCAAGGGAAACATCTCAGGTCACCCTTTGCTTTGAGATTGATGCCAACGGTATTATGGTTGTCTCTGCCAAGGATAAATCAACGCGGAAGAGGAGCCAGATTACACTCACCAATAACCACAAAGGCAGGCTATCACAGGAAGAAATTGAGAAGATGATAAAGGAGGCAGAGAGGTACAAGTTAGAGGATCGGGAGAATAAGAAGAAAATGGAGGCTAAGCTTGCATTGAAAGATTATGCATCTAACACGATGGACACAGTTTCTAACCTACCAAATTTGAACGAAGTGGACAAGACAAAAATTGTAGATGCAGTTGAAACGGTTATGCGATGGCTTGATAAGAATGAGAACAAACTTGCTGAATGTGAAAATTATGAGAATGAGATGAGAAAACTTGAAAACCTCTGCAATTCGATGTGGCCTAAGATGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

621

Amino Acids

69.58

Weight (kDa)

5.9

Isoelectric Point (pI)

33.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 13 - 618 5.7e-226 Hsp70 protein
MreB_Mbl PF06723 129 - 384 9.3e-19 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
AccB1I GGYRCC 2 cut(s) 587, 1142
AccII CGCG 2 cut(s) 96, 1516
AciI CCGC 5 cut(s) 17, 183, 366, 1328, 1516
AclI AACGTT 1 cut(s) 609
AclWI GGATC 4 cut(s) 436, 957, 1051, 1626
AcsI RAATTY 3 cut(s) 929, 1053, 1705
AfaI GTAC 5 cut(s) 637, 753, 1065, 1358, 1607
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 41
AflII CTTAAG 1 cut(s) 656
AloI GAACNNNNNNTCC 2 cut(s) 594, 626
AluBI AGCT 8 cut(s) 554, 689, 695, 1072, 1102, 1157, 1379, 1651
AluI AGCT 8 cut(s) 554, 689, 695, 1072, 1102, 1157, 1379, 1651
Alw26I GTCTC 1 cut(s) 1498
AlwI GGATC 4 cut(s) 436, 957, 1051, 1626
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 3 cut(s) 290, 417, 1850
ApeKI GCWGC 2 cut(s) 554, 557
ApoI RAATTY 3 cut(s) 929, 1053, 1705
Asp700I GAANNNNTTC 2 cut(s) 209, 847
AspLEI GCGC 2 cut(s) 96, 237
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 9 cut(s) 188, 694, 710, 728, 751, 1184, 1376, 1444, 1531
AsuII TTCGAA 2 cut(s) 763, 891
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 2 cut(s) 587, 1142
BbvCI CCTCAGC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 541, 569
BccI CCATC 5 cut(s) 1085, 1244, 1295, 1675, 1755
BclI TGATCA 2 cut(s) 115, 333
BcoDI GTCTC 1 cut(s) 1498
BfaI CTAG 1 cut(s) 1864
BfmI CTRYAG 2 cut(s) 555, 690
BfoI RGCGCY 1 cut(s) 238
BfrI CTTAAG 1 cut(s) 656
BisI GCNGC 5 cut(s) 18, 183, 366, 555, 558
BlpI GCTNAGC 1 cut(s) 1647
BlsI GCNGC 5 cut(s) 19, 184, 367, 556, 559
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 4 cut(s) 589, 972, 1144, 1526
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 9 cut(s) 169, 217, 390, 490, 985, 1428, 1462, 1679, 1729
BmuI ACTGGG 1 cut(s) 171
BoxI GACNNNNGTC 1 cut(s) 1319
Bpu10I CCTNAGC 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 1647
Bpu14I TTCGAA 2 cut(s) 763, 891
Bsa29I ATCGAT 1 cut(s) 48
BsaBI GATNNNNATC 3 cut(s) 44, 332, 705
BsaJI CCNNGG 4 cut(s) 1059, 1231, 1433, 1500
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 390, 561
Bse8I GATNNNNATC 3 cut(s) 44, 332, 705
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 4 cut(s) 1059, 1231, 1433, 1500
BseGI GGATG 4 cut(s) 505, 1219, 1287, 1419
BseJI GATNNNNATC 3 cut(s) 44, 332, 705
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 2 cut(s) 390, 561
BseMII CTCAG 2 cut(s) 360, 1460
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 386, 1537
BseXI GCAGC 2 cut(s) 541, 569
BseYI CCCAGC 2 cut(s) 460, 1396
BsgI GTGCAG 1 cut(s) 1257
Bsh1236I CGCG 2 cut(s) 96, 1516
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 292, 419, 1852
BshNI GGYRCC 2 cut(s) 587, 1142
BshVI ATCGAT 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 4 cut(s) 329, 443, 1256, 1344
BslI CCNNNNNNNGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 1498
BsmFI GGGAC 4 cut(s) 329, 443, 1256, 1344
BsnI GGCC 3 cut(s) 292, 419, 1852
Bsp119I TTCGAA 2 cut(s) 763, 891
Bsp1407I TGTACA 1 cut(s) 751
Bsp1720I GCTNAGC 1 cut(s) 1647
BspACI CCGC 5 cut(s) 17, 183, 366, 1328, 1516
BspANI GGCC 3 cut(s) 292, 419, 1852
BspCNI CTCAG 2 cut(s) 361, 1459
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 2 cut(s) 96, 1516
BspLI GGNNCC 4 cut(s) 589, 972, 1144, 1526
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 4 cut(s) 436, 957, 1051, 1626
BspT104I TTCGAA 2 cut(s) 763, 891
BspT107I GGYRCC 2 cut(s) 587, 1142
BspTI CTTAAG 1 cut(s) 656
BsrDI GCAATG 2 cut(s) 390, 561
BsrFI RCCGGY 1 cut(s) 503
BsrGI TGTACA 1 cut(s) 751
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 4 cut(s) 1059, 1231, 1433, 1500
BssT1I CCWWGG 4 cut(s) 1059, 1231, 1433, 1500
Bst4CI ACNGT 9 cut(s) 138, 220, 436, 457, 572, 1172, 1481, 1690, 1753
Bst6I CTCTTC 2 cut(s) 930, 1514
BstAFI CTTAAG 1 cut(s) 656
BstAPI GCANNNNNTGC 2 cut(s) 563, 1142
BstAUI TGTACA 1 cut(s) 751
BstBI TTCGAA 2 cut(s) 763, 891
BstC8I GCNNGC 2 cut(s) 1559, 1653
BstDEI CTNAG 6 cut(s) 369, 806, 1296, 1446, 1647, 1854
BstEII GGTNACC 1 cut(s) 1450
BstF5I GGATG 4 cut(s) 505, 1219, 1287, 1419
BstFNI CGCG 2 cut(s) 96, 1516
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 96, 237
BstMAI GTCTC 1 cut(s) 1498
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 5 cut(s) 17, 91, 563, 1142, 1652
BstPAI GACNNNNGTC 1 cut(s) 1319
BstPI GGTNACC 1 cut(s) 1450
BstSFI CTRYAG 2 cut(s) 555, 690
BstUI CGCG 2 cut(s) 96, 1516
BstV1I GCAGC 2 cut(s) 541, 569
BstX2I RGATCY 2 cut(s) 949, 1043
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 2 cut(s) 949, 1043
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 3 cut(s) 292, 419, 1852
BsuTUI ATCGAT 1 cut(s) 48
BtgZI GCGATG 1 cut(s) 1774
BtsCI GGATG 4 cut(s) 505, 1219, 1287, 1419
BtsIMutI CAGTG 3 cut(s) 159, 216, 453
Cac8I GCNNGC 2 cut(s) 1559, 1653
CfoI GCGC 2 cut(s) 96, 237
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 48
Csp6I GTAC 5 cut(s) 636, 752, 1064, 1357, 1606
CspCI CAANNNNNGTGG 1 cut(s) 29
CviAII CATG 3 cut(s) 69, 280, 1342
CviQI GTAC 5 cut(s) 636, 752, 1064, 1357, 1606
DdeI CTNAG 6 cut(s) 369, 806, 1296, 1446, 1647, 1854
DraI TTTAAA 1 cut(s) 1351
Eam1104I CTCTTC 2 cut(s) 930, 1514
EarI CTCTTC 2 cut(s) 930, 1514
Eco130I CCWWGG 4 cut(s) 1059, 1231, 1433, 1500
Eco147I AGGCCT 1 cut(s) 419
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 32
Eco47III AGCGCT 1 cut(s) 236
Eco91I GGTNACC 1 cut(s) 1450
EcoO65I GGTNACC 1 cut(s) 1450
EcoRI GAATTC 1 cut(s) 1053
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 4 cut(s) 1059, 1231, 1433, 1500
EcoT22I ATGCAT 2 cut(s) 1343, 1672
ErhI CCWWGG 4 cut(s) 1059, 1231, 1433, 1500
FaeI CATG 3 cut(s) 72, 283, 1345
FaqI GGGAC 4 cut(s) 329, 443, 1256, 1344
FatI CATG 3 cut(s) 68, 279, 1341
FauI CCCGC 1 cut(s) 1321
FauNDI CATATG 2 cut(s) 142, 1138
FbaI TGATCA 2 cut(s) 115, 333
Fnu4HI GCNGC 5 cut(s) 18, 183, 366, 555, 558
FokI GGATG 4 cut(s) 512, 1226, 1274, 1406
Fsp4HI GCNGC 5 cut(s) 18, 183, 366, 555, 558
FspBI CTAG 1 cut(s) 1864
GlaI GCGC 2 cut(s) 95, 236
GluI GCNGC 5 cut(s) 18, 183, 366, 555, 558
GsaI CCCAGC 2 cut(s) 464, 1400
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 3 cut(s) 292, 419, 1852
HapII CCGG 1 cut(s) 504
HhaI GCGC 2 cut(s) 96, 237
Hin1II CATG 3 cut(s) 72, 283, 1345
Hin6I GCGC 2 cut(s) 94, 235
HinP1I GCGC 2 cut(s) 94, 235
HindIII AAGCTT 1 cut(s) 1649
HinfI GANTC 3 cut(s) 45, 309, 881
HpaII CCGG 1 cut(s) 504
HphI GGTGA 9 cut(s) 188, 694, 710, 728, 751, 1184, 1376, 1444, 1531
Hpy166II GTNNAC 3 cut(s) 742, 1357, 1720
Hpy188I TCNGA 2 cut(s) 44, 428
Hpy188III TCNNGA 5 cut(s) 575, 1121, 1186, 1196, 1622
Hpy8I GTNNAC 3 cut(s) 742, 1357, 1720
HpyAV CCTTC 8 cut(s) 23, 220, 578, 662, 662, 887, 1183, 1255
HpyCH4III ACNGT 9 cut(s) 138, 220, 436, 457, 572, 1172, 1481, 1690, 1753
HpyCH4IV ACGT 2 cut(s) 484, 609
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 91, 563, 1142, 1652
HpyF3I CTNAG 6 cut(s) 369, 806, 1296, 1446, 1647, 1854
HpySE526I ACGT 2 cut(s) 484, 609
Hsp92II CATG 3 cut(s) 72, 283, 1345
HspAI GCGC 2 cut(s) 94, 235
Ksp22I TGATCA 2 cut(s) 115, 333
LmnI GCTCC 4 cut(s) 970, 1099, 1435, 1524
Lsp1109I GCAGC 2 cut(s) 541, 569
LweI GCATC 9 cut(s) 169, 217, 390, 490, 985, 1428, 1462, 1679, 1729
MaeI CTAG 1 cut(s) 1864
MaeII ACGT 2 cut(s) 484, 609
MaeIII GTNAC 3 cut(s) 1216, 1312, 1450
MflI RGATCY 2 cut(s) 949, 1043
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 1191
Mph1103I ATGCAT 2 cut(s) 1343, 1672
MroXI GAANNNNTTC 2 cut(s) 209, 847
MseI TTAA 4 cut(s) 170, 471, 657, 1350
MspA1I CMGCKG 2 cut(s) 368, 554
MspCI CTTAAG 1 cut(s) 656
MspI CCGG 1 cut(s) 504
MvnI CGCG 2 cut(s) 96, 1516
MwoI GCNNNNNNNGC 5 cut(s) 17, 91, 563, 1142, 1652
NdeI CATATG 2 cut(s) 142, 1138
NlaIII CATG 3 cut(s) 72, 283, 1345
NlaIV GGNNCC 4 cut(s) 589, 972, 1144, 1526
NmuCI GTSAC 3 cut(s) 1216, 1312, 1450
NsiI ATGCAT 2 cut(s) 1343, 1672
NspV TTCGAA 2 cut(s) 763, 891
PceI AGGCCT 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 917
PdmI GAANNNNTTC 2 cut(s) 209, 847
PfeI GAWTC 2 cut(s) 45, 881
PkrI GCNGC 5 cut(s) 19, 184, 367, 556, 559
Ple19I CGATCG 1 cut(s) 42
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PshAI GACNNNNGTC 1 cut(s) 1319
PsiI TTATAA 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 609
PspEI GGTNACC 1 cut(s) 1450
PspFI CCCAGC 2 cut(s) 460, 1396
PspN4I GGNNCC 4 cut(s) 589, 972, 1144, 1526
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 2 cut(s) 949, 1043
PvuI CGATCG 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 5 cut(s) 637, 753, 1065, 1358, 1607
RsaNI GTAC 5 cut(s) 636, 752, 1064, 1357, 1606
SaqAI TTAA 4 cut(s) 170, 471, 657, 1350
SatI GCNGC 5 cut(s) 18, 183, 366, 555, 558
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 318
SfaNI GCATC 9 cut(s) 169, 217, 390, 490, 985, 1428, 1462, 1679, 1729
SfcI CTRYAG 2 cut(s) 555, 690
SfuI TTCGAA 2 cut(s) 763, 891
SinI GGWCC 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
SseBI AGGCCT 1 cut(s) 419
SsiI CCGC 5 cut(s) 17, 183, 366, 1328, 1516
SspI AATATT 1 cut(s) 595
SspMI CTAG 1 cut(s) 1864
StuI AGGCCT 1 cut(s) 419
StyI CCWWGG 4 cut(s) 1059, 1231, 1433, 1500
TaaI ACNGT 9 cut(s) 138, 220, 436, 457, 572, 1172, 1481, 1690, 1753
TaiI ACGT 2 cut(s) 487, 612
TaqI TCGA 7 cut(s) 48, 763, 891, 911, 1185, 1323, 1844
TatI WGTACW 1 cut(s) 751
TauI GCSGC 3 cut(s) 20, 185, 368
TfiI GAWTC 2 cut(s) 45, 881
Tru1I TTAA 4 cut(s) 170, 471, 657, 1350
Tru9I TTAA 4 cut(s) 170, 471, 657, 1350
TscAI CASTG 3 cut(s) 166, 223, 460
TseFI GTSAC 3 cut(s) 1216, 1312, 1450
TseI GCWGC 2 cut(s) 554, 557
Tsp45I GTSAC 3 cut(s) 1216, 1312, 1450
TspDTI ATGAA 5 cut(s) 296, 363, 536, 1140, 1274
TspGWI ACGGA 1 cut(s) 1412
TspRI CASTG 3 cut(s) 166, 223, 460
Vha464I CTTAAG 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 3 cut(s) 929, 1053, 1705
XcmI CCANNNNNNNNNTGG 1 cut(s) 1483
XmnI GAANNNNTTC 2 cut(s) 209, 847
XspI CTAG 1 cut(s) 1864
Zsp2I ATGCAT 2 cut(s) 1343, 1672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.