Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003035

Physical Location & Seq

Genomic Coordinates Reverse (-)

36520999 .. 36528866

Gene Structure 7868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1833 bp

ATGTTTGTTTTTCAAATAAATTTATGCCATTCTCTGGTAGAATTAGGTAGGCTTTGTCCCGGCTTGCACACAATGTTTCACACTCTCAGATTGAGCGCCAGGTCCTCCCTCACACGACTAATCGCCGCCGCCGGCACAAGCGCCACCGCAACCACCGGAATCTCCGTATCCGGAAGAGTTGCTGTCACTGCTAGTGGTGGTGGTGGTGGTGGTGGTGGTGCAGAAGCAGCACAACCCCAGCAGCGGCGGCACAAGTGCAGCGAAGTCGGAGGAGGAGAGTACGAGAACATAAGGGCGGACGTGAACTGTCCCCGATGCTCGAAGCAAATGGCGGTCCTGTTCTCGACCCGACCGCTGTCGATTACGGGCCGAGAGACGGGGGTTTACCAGGCCGTGAATCTGTGCCCCAATTGCAACACCGCCTTCTATTTCAGGCCATCCAAGCTCCTCCCTTTACAAGGCACTTTCGTCGAGATTGGTAGGCTTAAGGCGCCGCCCACTCATGCCTCTCCTCATTCCACTTCCGATTCCGATTCCGGTTCGGGTTCCGGCCAGAAAGACCTCTTGACTCCCAAGGAGATATGTAAGGCTCTTGATGACTTTGTCATCGGCCAAGAAAGAGCCAAAAAGGTGCTTTCGGTTGCGGTTTATAACCACTACAAACGTATACGGCATTCTTCCCAACAGAGAAGGTCCGGTGTAGATTCAGTTGATTGTAAACCTCACAGTGTTGATACTGATTCTGTTGAGTTGGAGAAGAGCAATGTATTGTTAATGGGTCCCACTGGTTCAGGGAAGACTTTACTTGCAAAAACACTAGCCCGTGTTGTGAATGTTCCATTTGCCATTGCTGATGCAACAACATTAACACAGGCAGGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAGACTTCTTACGGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGATGAAGTTGATAAGATAATAAAGAAGGCTGAGAGCTTAAATATTGGCCGAGATGTGTCTGGAGAGGGCGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACCGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAGCATCCTCGTGGTGATAGTATACAGATAGATACAAAGGATATCCTTTTCATATGTGGTGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTCCGTGCAAACATGAGGTCCAGTGGATTGACTGACGCCATAGTGACGTCATCCTTGTTGGAATCTGTAGAAAGTGGAGATCTTATTGCTTATGGCCTGATACCTGAATTTGTTGGGCGCTTTCCTATTTTAGTGAGTTTGTCATCTTTAAACGAGGATCAACTTGTTCAGGTCCTCACAGAACCTAAAAATGCTCTTGGTAAGCAGTACAAGATGATGTTTGACATGAACAATGTCAAATTACATTTTACTGACGATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCTCGAGGTTTGAGAGCCATATTGGAGAATATTCTTACAGAAGCAATGTTCGAGGTTCCAGACATCAAGACAGAAACCAATAGTATACATACAGTTCTGGTTGATGAAGAAGCTGTTGGGTCAGTGGATGCTCCAGGACGAGGAGCAAAAATTCTTAGTGGTGAAGGCATAGTGGAGCAATTTCTTCATGAAACAAAGTCGAGAGAGCACATGAAACGAAAAGAAAATGAGAATAAAAATGAGGCAATTGCAGGTACTGCCGTACTGGTCTCCTTGAAAATATCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

610

Amino Acids

65.57

Weight (kDa)

7.23

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	252 - 456	9.3e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	256 - 361	7.2e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	463 - 532	2e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49840 AT5G49840 AT5G49840 AT5G49840
fragaria_vesca	FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740
malus_domestica	MD08G1248400.v1.1
prunus_persica	Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1
pyrus_communis	pycom08g21520
rosa_chinensis	RchiOBHm_Chr7g0219511
rosa_laevigata	RLG00000002286
rosa_multiflora	Rmu_sc0003047.1_g000013
rosa_roxburghii	Rroxscaffold_3G00240000
rosa_rugosa	Rorug07G0185800 Rorug07G0185900
rosa_samantha	Rh7AG328400 Rh7BG318900 Rh7CG345800 Rh7DG324800
rosa_wichuraiana	Rw7G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	651
AatII	GACGTC	1 cut(s)	1289
Acc36I	ACCTGC	2 cut(s)	866, 1784
AccB1I	GGYRCC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccI	GTMKAC	4 cut(s)	667, 966, 1129, 1627
AccIII	TCCGGA	1 cut(s)	170
AclWI	GGATC	1 cut(s)	1404
AcoI	YGGCCR	3 cut(s)	550, 610, 1018
AcsI	RAATTY	3 cut(s)	19, 1346, 1692
AcyI	GRCGYC	4 cut(s)	491, 1041, 1275, 1286
AfaI	GTAC	4 cut(s)	281, 1448, 1798, 1806
AfiI	CCNNNNNNNGG	6 cut(s)	34, 243, 376, 458, 1097, 1682
AflII	CTTAAG	1 cut(s)	485
AgeI	ACCGGT	1 cut(s)	1538
AgsI	TTSAA	2 cut(s)	14, 1819
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	3 cut(s)	98, 387, 1675
AjuI	GAANNNNNNNTTGG	2 cut(s)	1641, 1673
AluBI	AGCT	6 cut(s)	445, 929, 950, 1008, 1103, 1655
AluI	AGCT	6 cut(s)	445, 929, 950, 1008, 1103, 1655
Alw21I	GWGCWC	4 cut(s)	1105, 1237, 1546, 1752
Alw26I	GTCTC	2 cut(s)	368, 1816
AlwI	GGATC	1 cut(s)	1404
AlwNI	CAGNNNCTG	1 cut(s)	1799
Ama87I	CYCGRG	1 cut(s)	1545
Aor13HI	TCCGGA	1 cut(s)	170
AoxI	GGCC	7 cut(s)	367, 390, 434, 550, 610, 1018, 1333
ApeKI	GCWGC	4 cut(s)	227, 241, 258, 947
ApoI	RAATTY	3 cut(s)	19, 1346, 1692
ArsI	GACNNNNNNTTYG	2 cut(s)	1241, 1273
AsiGI	ACCGGT	1 cut(s)	1538
AspLEI	GCGC	4 cut(s)	98, 143, 493, 1359
AspS9I	GGNCC	7 cut(s)	102, 334, 367, 693, 779, 1257, 1411
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	1133, 1715
AvaI	CYCGRG	1 cut(s)	1545
AvaII	GGWCC	6 cut(s)	102, 334, 693, 779, 1257, 1411
BaeGI	GKGCMC	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	1788, 1821
BanI	GGYRCC	1 cut(s)	490
BanII	GRGCYC	1 cut(s)	1105
BauI	CACGAG	1 cut(s)	1116
BbsI	GAAGAC	2 cut(s)	803, 1196
Bbv12I	GWGCWC	4 cut(s)	1105, 1237, 1546, 1752
BbvI	GCAGC	4 cut(s)	239, 253, 270, 959
BccI	CCATC	1 cut(s)	445
BceAI	ACGGC	3 cut(s)	377, 686, 1787
BcgI	CGANNNNNNTGC	4 cut(s)	247, 281, 451, 485
BciT130I	CCWGG	3 cut(s)	100, 389, 1677
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	2 cut(s)	368, 1816
BfaI	CTAG	2 cut(s)	192, 818
BfmI	CTRYAG	1 cut(s)	1305
BfoI	RGCGCY	4 cut(s)	99, 144, 494, 1360
BfrI	CTTAAG	1 cut(s)	485
BfuAI	ACCTGC	2 cut(s)	866, 1784
BfuI	GTATCC	1 cut(s)	178
BglII	AGATCT	1 cut(s)	1318
BisI	GCNGC	9 cut(s)	126, 129, 228, 242, 245, 248, 259, 494, 948
BlsI	GCNGC	9 cut(s)	127, 130, 229, 243, 246, 249, 260, 495, 949
Bme1390I	CCNGG	4 cut(s)	60, 100, 389, 1677
Bme18I	GGWCC	6 cut(s)	102, 334, 693, 779, 1257, 1411
BmeT110I	CYCGRG	1 cut(s)	1545
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	7 cut(s)	102, 334, 367, 693, 779, 1257, 1411
BmiI	GGNNCC	6 cut(s)	492, 547, 780, 781, 1075, 1599
BmrFI	CCNGG	4 cut(s)	60, 100, 389, 1677
BmsI	GCATC	5 cut(s)	305, 844, 1120, 1486, 1660
BoxI	GACNNNNGTC	1 cut(s)	355
BpiI	GAAGAC	2 cut(s)	803, 1196
BpmI	CTGGAG	2 cut(s)	1053, 1659
BpuMI	CCSGG	1 cut(s)	60
BsaHI	GRCGYC	4 cut(s)	491, 1041, 1275, 1286
BsaI	GGTCTC	1 cut(s)	1816
BsaJI	CCNNGG	1 cut(s)	573
BsaWI	WCCGGW	5 cut(s)	155, 170, 536, 695, 1538
BsaXI	ACNNNNNCTCC	6 cut(s)	879, 909, 1026, 1056, 1224, 1254
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 243, 376, 458, 1097, 1682
Bse118I	RCCGGY	2 cut(s)	131, 1538
Bse1I	ACTGG	4 cut(s)	790, 1238, 1260, 1812
Bse3DI	GCAATG	5 cut(s)	769, 846, 1052, 1530, 1593
BseAI	TCCGGA	1 cut(s)	170
BseBI	CCWGG	3 cut(s)	100, 389, 1677
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	4 cut(s)	437, 1111, 1289, 1675
BseLI	CCNNNNNNNGG	6 cut(s)	34, 243, 376, 458, 1097, 1682
BseMI	GCAATG	5 cut(s)	769, 846, 1052, 1530, 1593
BseMII	CTCAG	5 cut(s)	100, 921, 965, 993, 1493
BseNI	ACTGG	4 cut(s)	790, 1238, 1260, 1812
BseRI	GAGGAG	5 cut(s)	285, 288, 437, 501, 1698
BseSI	GKGCMC	1 cut(s)	407
BseXI	GCAGC	4 cut(s)	239, 253, 270, 959
BseYI	CCCAGC	1 cut(s)	237
BsgI	GTGCAG	2 cut(s)	240, 277
Bsh1285I	CGRYCG	1 cut(s)	353
BshFI	GGCC	7 cut(s)	369, 392, 436, 552, 612, 1020, 1335
BshNI	GGYRCC	1 cut(s)	490
BshTI	ACCGGT	1 cut(s)	1538
BsiEI	CGRYCG	1 cut(s)	353
BsiHKAI	GWGCWC	4 cut(s)	1105, 1237, 1546, 1752
BsiHKCI	CYCGRG	1 cut(s)	1545
BsiSI	CCGG	8 cut(s)	60, 132, 156, 171, 537, 549, 696, 1539
BslFI	GGGAC	3 cut(s)	42, 294, 765
BslI	CCNNNNNNNGG	6 cut(s)	34, 243, 376, 458, 1097, 1682
BsmAI	GTCTC	2 cut(s)	368, 1816
BsmBI	CGTCTC	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	42, 294, 765
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	7 cut(s)	369, 392, 436, 552, 612, 1020, 1335
Bso31I	GGTCTC	1 cut(s)	1816
BsoBI	CYCGRG	1 cut(s)	1545
Bsp1286I	GDGCHC	5 cut(s)	407, 1105, 1237, 1546, 1752
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	1318, 1396
BspANI	GGCC	7 cut(s)	369, 392, 436, 552, 612, 1020, 1335
BspCNI	CTCAG	5 cut(s)	99, 922, 964, 994, 1494
BspEI	TCCGGA	1 cut(s)	170
BspHI	TCATGA	1 cut(s)	1729
BspLI	GGNNCC	6 cut(s)	492, 547, 780, 781, 1075, 1599
BspMI	ACCTGC	2 cut(s)	866, 1784
BspPI	GGATC	1 cut(s)	1404
BspQI	GCTCTTC	1 cut(s)	752
BspT107I	GGYRCC	1 cut(s)	490
BspTI	CTTAAG	1 cut(s)	485
BspTNI	GGTCTC	1 cut(s)	1816
BsrDI	GCAATG	5 cut(s)	769, 846, 1052, 1530, 1593
BsrFI	RCCGGY	2 cut(s)	131, 1538
BsrI	ACTGG	4 cut(s)	790, 1238, 1260, 1812
BssAI	RCCGGY	2 cut(s)	131, 1538
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	2 cut(s)	1318, 1396
BssNAI	GTATAC	3 cut(s)	668, 1130, 1628
BssNI	GRCGYC	4 cut(s)	491, 1041, 1275, 1286
BssSI	CACGAG	1 cut(s)	1116
BssT1I	CCWWGG	1 cut(s)	573
Bst1107I	GTATAC	3 cut(s)	668, 1130, 1628
Bst2BI	CACGAG	1 cut(s)	1116
Bst2UI	CCWGG	3 cut(s)	100, 389, 1677
Bst4CI	ACNGT	4 cut(s)	308, 728, 1078, 1636
Bst6I	CTCTTC	2 cut(s)	169, 752
BstACI	GRCGYC	4 cut(s)	491, 1041, 1275, 1286
BstAFI	CTTAAG	1 cut(s)	485
BstAPI	GCANNNNNTGC	1 cut(s)	1799
BstC8I	GCNNGC	2 cut(s)	65, 133
BstDEI	CTNAG	6 cut(s)	86, 930, 951, 1002, 1502, 1697
BstENI	CCTNNNNNAGG	2 cut(s)	456, 1095
BstF5I	GGATG	4 cut(s)	437, 1111, 1289, 1675
BstH2I	RGCGCY	4 cut(s)	99, 144, 494, 1360
BstHHI	GCGC	4 cut(s)	98, 143, 493, 1359
BstKTI	GATC	2 cut(s)	1321, 1399
BstMAI	GTCTC	2 cut(s)	368, 1816
BstMBI	GATC	2 cut(s)	1318, 1396
BstMCI	CGRYCG	1 cut(s)	353
BstMWI	GCNNNNNNNGC	8 cut(s)	188, 227, 247, 411, 442, 490, 1520, 1799
BstNI	CCWGG	3 cut(s)	100, 389, 1677
BstPAI	GACNNNNGTC	1 cut(s)	355
BstSCI	CCNGG	4 cut(s)	58, 98, 387, 1675
BstSFI	CTRYAG	1 cut(s)	1305
BstSLI	GKGCMC	1 cut(s)	407
BstV1I	GCAGC	4 cut(s)	239, 253, 270, 959
BstV2I	GAAGAC	2 cut(s)	803, 1196
BstX2I	RGATCY	1 cut(s)	1318
BstYI	RGATCY	1 cut(s)	1318
BstZ17I	GTATAC	3 cut(s)	668, 1130, 1628
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	7 cut(s)	369, 392, 436, 552, 612, 1020, 1335
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	4 cut(s)	437, 1111, 1289, 1675
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	6 cut(s)	186, 733, 783, 1267, 1499, 1671
BveI	ACCTGC	2 cut(s)	866, 1784
Cac8I	GCNNGC	2 cut(s)	65, 133
CaiI	CAGNNNCTG	1 cut(s)	1799
CciI	TCATGA	1 cut(s)	1729
CfoI	GCGC	4 cut(s)	98, 143, 493, 1359
Cfr10I	RCCGGY	2 cut(s)	131, 1538
Cfr13I	GGNCC	7 cut(s)	102, 334, 367, 693, 779, 1257, 1411
CseI	GACGC	2 cut(s)	1030, 1283
Csp6I	GTAC	4 cut(s)	280, 1447, 1797, 1805
CspAI	ACCGGT	1 cut(s)	1538
CviAII	CATG	5 cut(s)	503, 1252, 1465, 1730, 1753
CviQI	GTAC	4 cut(s)	280, 1447, 1797, 1805
DdeI	CTNAG	6 cut(s)	86, 930, 951, 1002, 1502, 1697
DinI	GGCGCC	1 cut(s)	492
DpnI	GATC	2 cut(s)	1320, 1398
DpnII	GATC	2 cut(s)	1318, 1396
DraI	TTTAAA	1 cut(s)	1389
EaeI	YGGCCR	3 cut(s)	550, 610, 1018
Eam1104I	CTCTTC	2 cut(s)	169, 752
EarI	CTCTTC	2 cut(s)	169, 752
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	1103
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	1105
Eco31I	GGTCTC	1 cut(s)	1816
Eco32I	GATATC	1 cut(s)	1150
Eco47I	GGWCC	6 cut(s)	102, 334, 693, 779, 1257, 1411
Eco53kI	GAGCTC	1 cut(s)	1103
Eco88I	CYCGRG	1 cut(s)	1545
EcoICRI	GAGCTC	1 cut(s)	1103
EcoNI	CCTNNNNNAGG	2 cut(s)	456, 1095
EcoO109I	RGGNCCY	3 cut(s)	102, 779, 1411
EcoRII	CCWGG	3 cut(s)	98, 387, 1675
EcoRV	GATATC	1 cut(s)	1150
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	1105
EgeI	GGCGCC	1 cut(s)	492
EheI	GGCGCC	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	368
FaeI	CATG	5 cut(s)	506, 1255, 1468, 1733, 1756
FaqI	GGGAC	3 cut(s)	42, 294, 765
FatI	CATG	5 cut(s)	502, 1251, 1464, 1729, 1752
FauNDI	CATATG	1 cut(s)	1160
FblI	GTMKAC	4 cut(s)	667, 966, 1129, 1627
Fnu4HI	GCNGC	9 cut(s)	126, 129, 228, 242, 245, 248, 259, 494, 948
FokI	GGATG	4 cut(s)	424, 1098, 1276, 1682
FriOI	GRGCYC	1 cut(s)	1105
Fsp4HI	GCNGC	9 cut(s)	126, 129, 228, 242, 245, 248, 259, 494, 948
FspBI	CTAG	2 cut(s)	192, 818
GlaI	GCGC	4 cut(s)	97, 142, 492, 1358
GluI	GCNGC	9 cut(s)	126, 129, 228, 242, 245, 248, 259, 494, 948
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	2 cut(s)	1053, 1659
HaeII	RGCGCY	4 cut(s)	99, 144, 494, 1360
HaeIII	GGCC	7 cut(s)	369, 392, 436, 552, 612, 1020, 1335
HapII	CCGG	8 cut(s)	60, 132, 156, 171, 537, 549, 696, 1539
HgaI	GACGC	2 cut(s)	1030, 1283
HhaI	GCGC	4 cut(s)	98, 143, 493, 1359
Hin1I	GRCGYC	4 cut(s)	491, 1041, 1275, 1286
Hin1II	CATG	5 cut(s)	506, 1255, 1468, 1733, 1756
Hin6I	GCGC	4 cut(s)	96, 141, 491, 1357
HinP1I	GCGC	4 cut(s)	96, 141, 491, 1357
HpaII	CCGG	8 cut(s)	60, 132, 156, 171, 537, 549, 696, 1539
HphI	GGTGA	2 cut(s)	1133, 1715
Hpy166II	GTNNAC	7 cut(s)	304, 385, 668, 719, 967, 1130, 1628
Hpy188I	TCNGA	7 cut(s)	89, 269, 526, 532, 954, 1107, 1201
Hpy8I	GTNNAC	7 cut(s)	304, 385, 668, 719, 967, 1130, 1628
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	6 cut(s)	433, 684, 991, 1064, 1513, 1700
HpyCH4III	ACNGT	4 cut(s)	308, 728, 1078, 1636
HpyCH4IV	ACGT	3 cut(s)	300, 664, 1286
HpyF10VI	GCNNNNNNNGC	8 cut(s)	188, 227, 247, 411, 442, 490, 1520, 1799
HpyF3I	CTNAG	6 cut(s)	86, 930, 951, 1002, 1502, 1697
HpySE526I	ACGT	3 cut(s)	300, 664, 1286
Hsp92I	GRCGYC	4 cut(s)	491, 1041, 1275, 1286
Hsp92II	CATG	5 cut(s)	506, 1255, 1468, 1733, 1756
HspAI	GCGC	4 cut(s)	96, 141, 491, 1357
KasI	GGCGCC	1 cut(s)	490
KflI	GGGWCCC	1 cut(s)	779
Kpn2I	TCCGGA	1 cut(s)	170
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	1318, 1396
LguI	GCTCTTC	1 cut(s)	752
LmnI	GCTCC	6 cut(s)	450, 1100, 1232, 1678, 1685, 1717
Lsp1109I	GCAGC	4 cut(s)	239, 253, 270, 959
LweI	GCATC	5 cut(s)	305, 844, 1120, 1486, 1660
MaeI	CTAG	2 cut(s)	192, 818
MaeII	ACGT	3 cut(s)	300, 664, 1286
MaeIII	GTNAC	2 cut(s)	184, 1282
MalI	GATC	2 cut(s)	1320, 1398
MboI	GATC	2 cut(s)	1318, 1396
MboII	GAAGA	9 cut(s)	186, 669, 769, 808, 902, 1201, 1209, 1661, 1718
MfeI	CAATTG	2 cut(s)	409, 1788
MflI	RGATCY	1 cut(s)	1318
MhlI	GDGCHC	5 cut(s)	407, 1105, 1237, 1546, 1752
MluCI	AATT	8 cut(s)	19, 41, 409, 1346, 1478, 1692, 1721, 1788
Mly113I	GGCGCC	1 cut(s)	491
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	6 cut(s)	247, 732, 865, 1047, 1069, 1278
MroI	TCCGGA	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	6 cut(s)	486, 773, 866, 1010, 1083, 1388
MslI	CAYNNNNRTG	1 cut(s)	1116
MspA1I	CMGCKG	2 cut(s)	244, 355
MspCI	CTTAAG	1 cut(s)	485
MspI	CCGG	8 cut(s)	60, 132, 156, 171, 537, 549, 696, 1539
MspR9I	CCNGG	4 cut(s)	60, 100, 389, 1677
MunI	CAATTG	2 cut(s)	409, 1788
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	3 cut(s)	100, 389, 1677
MwoI	GCNNNNNNNGC	8 cut(s)	188, 227, 247, 411, 442, 490, 1520, 1799
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	60
NdeI	CATATG	1 cut(s)	1160
NdeII	GATC	2 cut(s)	1318, 1396
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	5 cut(s)	506, 1255, 1468, 1733, 1756
NlaIV	GGNNCC	6 cut(s)	492, 547, 780, 781, 1075, 1599
NmeAIII	GCCGAG	2 cut(s)	395, 1046
NmuCI	GTSAC	2 cut(s)	184, 1282
PaeR7I	CTCGAG	1 cut(s)	1545
PagI	TCATGA	1 cut(s)	1729
PciSI	GCTCTTC	1 cut(s)	752
PctI	GAATGC	1 cut(s)	673
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	9 cut(s)	159, 397, 527, 533, 704, 740, 899, 1214, 1301
PflFI	GACNNNGTC	1 cut(s)	602
PflMI	CCANNNNNTGG	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	1675
PinAI	ACCGGT	1 cut(s)	1538
PkrI	GCNGC	9 cut(s)	127, 130, 229, 243, 246, 249, 260, 495, 949
PleI	GAGTC	1 cut(s)	562
PluTI	GGCGCC	1 cut(s)	494
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	3 cut(s)	102, 779, 1411
PshAI	GACNNNNGTC	1 cut(s)	355
PsiI	TTATAA	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	1105
Psp5II	RGGWCCY	3 cut(s)	102, 779, 1411
Psp6I	CCWGG	3 cut(s)	98, 387, 1675
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	3 cut(s)	98, 387, 1675
PspN4I	GGNNCC	6 cut(s)	492, 547, 780, 781, 1075, 1599
PspPI	GGNCC	7 cut(s)	102, 334, 367, 693, 779, 1257, 1411
PspPPI	RGGWCCY	3 cut(s)	102, 779, 1411
PspXI	VCTCGAGB	1 cut(s)	1545
PsrI	GAACNNNNNNTAC	2 cut(s)	1071, 1103
PstNI	CAGNNNCTG	1 cut(s)	1799
PsuI	RGATCY	1 cut(s)	1318
PsyI	GACNNNGTC	1 cut(s)	602
RsaI	GTAC	4 cut(s)	281, 1448, 1798, 1806
RsaNI	GTAC	4 cut(s)	280, 1447, 1797, 1805
RseI	CAYNNNNRTG	1 cut(s)	1116
SacI	GAGCTC	1 cut(s)	1105
SapI	GCTCTTC	1 cut(s)	752
SaqAI	TTAA	6 cut(s)	486, 773, 866, 1010, 1083, 1388
SatI	GCNGC	9 cut(s)	126, 129, 228, 242, 245, 248, 259, 494, 948
Sau3AI	GATC	2 cut(s)	1318, 1396
Sau96I	GGNCC	7 cut(s)	102, 334, 367, 693, 779, 1257, 1411
SchI	GAGTC	1 cut(s)	562
ScrFI	CCNGG	4 cut(s)	60, 100, 389, 1677
SduI	GDGCHC	5 cut(s)	407, 1105, 1237, 1546, 1752
SfaNI	GCATC	5 cut(s)	305, 844, 1120, 1486, 1660
SfcI	CTRYAG	1 cut(s)	1305
SfoI	GGCGCC	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	1545
SgrAI	CRCCGGYG	1 cut(s)	1538
SinI	GGWCC	6 cut(s)	102, 334, 693, 779, 1257, 1411
SlaI	CTCGAG	1 cut(s)	1545
SmiMI	CAYNNNNRTG	1 cut(s)	1116
SmlI	CTYRAG	2 cut(s)	485, 1545
SmoI	CTYRAG	2 cut(s)	485, 1545
Sse9I	AATT	8 cut(s)	19, 41, 409, 1346, 1478, 1692, 1721, 1788
SspDI	GGCGCC	1 cut(s)	490
SspI	AATATT	3 cut(s)	906, 1015, 1573
SspMI	CTAG	2 cut(s)	192, 818
SstI	GAGCTC	1 cut(s)	1105
StyD4I	CCNGG	4 cut(s)	58, 98, 387, 1675
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	4 cut(s)	308, 728, 1078, 1636
TaiI	ACGT	3 cut(s)	303, 667, 1289
TaqI	TCGA	7 cut(s)	320, 344, 359, 471, 1546, 1593, 1742
TasI	AATT	8 cut(s)	19, 41, 409, 1346, 1478, 1692, 1721, 1788
TatI	WGTACW	1 cut(s)	1446
TauI	GCSGC	5 cut(s)	128, 131, 247, 250, 496
TfiI	GAWTC	9 cut(s)	159, 397, 527, 533, 704, 740, 899, 1214, 1301
Tru1I	TTAA	6 cut(s)	486, 773, 866, 1010, 1083, 1388
Tru9I	TTAA	6 cut(s)	486, 773, 866, 1010, 1083, 1388
TscAI	CASTG	6 cut(s)	193, 733, 790, 1267, 1506, 1671
TseFI	GTSAC	2 cut(s)	184, 1282
TseI	GCWGC	4 cut(s)	227, 241, 258, 947
Tsp45I	GTSAC	2 cut(s)	184, 1282
TspDTI	ATGAA	7 cut(s)	990, 1147, 1481, 1662, 1718, 1746, 1769
TspGWI	ACGGA	3 cut(s)	154, 938, 1232
TspRI	CASTG	6 cut(s)	193, 733, 790, 1267, 1506, 1671
Tth111I	GACNNNGTC	1 cut(s)	602
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	485
VpaK11BI	GGWCC	6 cut(s)	102, 334, 693, 779, 1257, 1411
XagI	CCTNNNNNAGG	2 cut(s)	456, 1095
XapI	RAATTY	3 cut(s)	19, 1346, 1692
XhoI	CTCGAG	1 cut(s)	1545
XmiI	GTMKAC	4 cut(s)	667, 966, 1129, 1627
XspI	CTAG	2 cut(s)	192, 818
ZraI	GACGTC	1 cut(s)	1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.