Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003035

Physical Location & Seq

Genomic Coordinates Reverse (-)

30943822 .. 30950085

Gene Structure 6264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG318900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGTTTCACACTCTCAGATTGAGCACCAGGTCCTCCCTCACACGACTAGTCGCCGCCGCCGCCGCCGCCGGCACAGGCGCCACCGCAACCACCAGAATCCCCGTATCCGGAAGAGTTGCTGTCACTGCTAGTGGTGGTGGTGCAGAAGCACAGCCCCAGCAGCAGCGGCGGCACAAGTGCAGCGAAGTCGGAGGAGGAGGAGGAGGAGAGTACGAGAACATAAGGGCGGATGTGAACTGTCCCCGATGCTCGAAGCAAATGGCGGTTCTGTTCTCGACCCGACCGCTGTCCATTACGGGCCGAGAGACGGGGGTATACCAGGCCGTGAATCTGTGCCCGAATTGCAACACCGCCTTCTATTTCAGGCCATCCAAGCTCCTCCCTTTGCAAGGCACTTTCGTCGAGATTGGTAAGCTTAAGGCGCCGCCCACTCATCATTCCACTTCCACTTCCCATTCCGATTCCGATTCCGGTTCCGGTTCCGGCCAGAAAGACCTCTTGACTCCCAAGGAGATACGTAAGGCTCTTGATGACTTTGTTATCGGCCAAGAAAGAGCCAAAAAGGTGCTTTCGGTTGCGGTTTATAACCACTACAAAAGAATACGGCATTCTTCCCAACAGAGAAGGTCCGGTGTAGATTCAGTTGATTGTAAGCCTCACAGTGTTGATACTGAGTCTGTTGAGTTGGAGAAGAGCAATGTATTATTAATGGGTCCCACTGGTTCAGGGAAGACTTTACTTGCAAAAACACTAGCCCGTGTTGTGAATGTTCCGTTTGCCATTGCTGATGCAACAACATTAACACAGGCAAGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAGACTTCTTACGGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGATGAAGTTGATAAGATAATAAAGAAGGCTGAGGGCTTAAATATTGGCCGAGATGTGTCTGGAGAGGGCGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACCGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAGCATCCTCGTGGTGATAGTATACAGATGGATACAAAGGATATCCTTTTCATATGTGGAGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCAAACATGAGGTCCAGTGGATTGACCGACGCCATAGTGACATCATCCTTGTTGGAATCTGTAGAAAGTGGAGATCTTATTGCTTATGGCCTGATACCTGAATTTGTTGGGCGCTTTCCTATTTTAGTGAGTTTGTCATCTTTAAACGAGGATCAACTTGTTCAGGTCCTCACAGAACCTAAAAATGCTCTTGGTAAACAGTACAAGATGATGTTTGACATGAACAATGTCAAATTACATTTTACTGACAATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCTCGAGGTTTGAGAGCCATATTGGAGAATATTCTTACAGAAGCAATGTTCGAGGTTCCAGACATCAAGACAGAAACCAATAGTATACATGCAGTTCTGGTTGATGAAGAAGCTGTTGGGTCAGTGGATGCTCCAGGACAAGGAGCAAAAATTCTTAGTGGTGAAGGCATAGTGGAGCAATTTCTTCATGAAACAAAGTCGAGAGAGCACATGGGAAAGCAGGGGCCTGCTGAAGGCGAATGTTCGCAAGAAGTTTTGGAGCTTCAATCAAGAGCCTTTGGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

587

Amino Acids

63.13

Weight (kDa)

6.72

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	230 - 434	2.6e-29	AAA domain (Cdc48 subfamily)
AAA	PF00004	234 - 339	3.6e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	441 - 510	3.1e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49840 AT5G49840 AT5G49840 AT5G49840
fragaria_vesca	FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740
malus_domestica	MD08G1248400.v1.1
prunus_persica	Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1
pyrus_communis	pycom08g21520
rosa_chinensis	RchiOBHm_Chr7g0219511
rosa_laevigata	RLG00000002286
rosa_multiflora	Rmu_sc0003047.1_g000013
rosa_roxburghii	Rroxscaffold_3G00240000
rosa_rugosa	Rorug07G0185800 Rorug07G0185900
rosa_samantha	Rh7AG328400 Rh7BG318900 Rh7CG345800 Rh7DG324800
rosa_wichuraiana	Rw7G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AccB1I	GGYRCC	2 cut(s)	77, 421
AccI	GTMKAC	4 cut(s)	315, 900, 1063, 1561
AccIII	TCCGGA	1 cut(s)	107
AclWI	GGATC	1 cut(s)	1338
AcoI	YGGCCR	3 cut(s)	484, 544, 952
AcsI	RAATTY	2 cut(s)	1280, 1626
AcuI	CTGAAG	1 cut(s)	1728
AcyI	GRCGYC	4 cut(s)	78, 422, 975, 1209
AfaI	GTAC	2 cut(s)	212, 1382
AfiI	CCNNNNNNNGG	6 cut(s)	107, 307, 389, 1031, 1616, 1709
AflII	CTTAAG	1 cut(s)	416
AgeI	ACCGGT	1 cut(s)	1472
AgsI	TTSAA	1 cut(s)	1742
AhlI	ACTAGT	1 cut(s)	46
AjnI	CCWGG	3 cut(s)	26, 318, 1609
AjuI	GAANNNNNNNTTGG	2 cut(s)	1575, 1607
AloI	GAACNNNNNNTCC	2 cut(s)	1158, 1190
AluBI	AGCT	7 cut(s)	376, 415, 863, 884, 1037, 1589, 1738
AluI	AGCT	7 cut(s)	376, 415, 863, 884, 1037, 1589, 1738
Alw21I	GWGCWC	5 cut(s)	26, 1039, 1171, 1480, 1686
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	1338
Ama87I	CYCGRG	1 cut(s)	1479
Aor13HI	TCCGGA	1 cut(s)	107
AoxI	GGCC	8 cut(s)	298, 321, 365, 484, 544, 952, 1267, 1700
ApeKI	GCWGC	4 cut(s)	160, 163, 180, 881
ApoI	RAATTY	2 cut(s)	1280, 1626
ArsI	GACNNNNNNTTYG	2 cut(s)	1175, 1207
AseI	ATTAAT	1 cut(s)	707
AsiGI	ACCGGT	1 cut(s)	1472
AspLEI	GCGC	3 cut(s)	80, 424, 1293
AspS9I	GGNCC	7 cut(s)	30, 298, 627, 713, 1191, 1345, 1700
AsuHPI	GGTGA	2 cut(s)	1067, 1649
AvaI	CYCGRG	1 cut(s)	1479
AvaII	GGWCC	5 cut(s)	30, 627, 713, 1191, 1345
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	77, 421
BanII	GRGCYC	1 cut(s)	1039
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	2 cut(s)	737, 1130
Bbv12I	GWGCWC	5 cut(s)	26, 1039, 1171, 1480, 1686
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	4 cut(s)	172, 175, 192, 893
BccI	CCATC	2 cut(s)	376, 1063
BceAI	ACGGC	2 cut(s)	308, 620
BcgI	CGANNNNNNTGC	4 cut(s)	169, 203, 382, 416
BciT130I	CCWGG	3 cut(s)	28, 320, 1611
BciVI	GTATCC	2 cut(s)	115, 1066
BcoDI	GTCTC	1 cut(s)	299
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	3 cut(s)	47, 129, 752
BfmI	CTRYAG	1 cut(s)	1239
BfoI	RGCGCY	3 cut(s)	81, 425, 1294
BfrI	CTTAAG	1 cut(s)	416
BfuI	GTATCC	2 cut(s)	115, 1066
BglII	AGATCT	1 cut(s)	1252
Bme1390I	CCNGG	3 cut(s)	28, 320, 1611
Bme18I	GGWCC	5 cut(s)	30, 627, 713, 1191, 1345
BmeT110I	CYCGRG	1 cut(s)	1479
BmgT120I	GGNCC	7 cut(s)	30, 298, 627, 713, 1191, 1345, 1700
BmiI	GGNNCC	9 cut(s)	79, 423, 475, 481, 714, 715, 1009, 1533, 1701
BmrFI	CCNGG	3 cut(s)	28, 320, 1611
BmsI	GCATC	4 cut(s)	236, 778, 1054, 1594
BoxI	GACNNNNGTC	1 cut(s)	286
BpiI	GAAGAC	2 cut(s)	737, 1130
BpmI	CTGGAG	2 cut(s)	987, 1593
Bpu10I	CCTNAGC	1 cut(s)	936
BsaAI	YACGTR	1 cut(s)	518
BsaHI	GRCGYC	4 cut(s)	78, 422, 975, 1209
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	5 cut(s)	107, 470, 476, 629, 1472
BsaXI	ACNNNNNCTCC	6 cut(s)	813, 843, 960, 990, 1158, 1188
Bsc4I	CCNNNNNNNGG	6 cut(s)	107, 307, 389, 1031, 1616, 1709
Bse118I	RCCGGY	2 cut(s)	68, 1472
Bse1I	ACTGG	3 cut(s)	724, 1172, 1194
Bse3DI	GCAATG	5 cut(s)	703, 780, 986, 1464, 1527
BseAI	TCCGGA	1 cut(s)	107
BseBI	CCWGG	3 cut(s)	28, 320, 1611
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	5 cut(s)	235, 368, 1045, 1223, 1609
BseLI	CCNNNNNNNGG	6 cut(s)	107, 307, 389, 1031, 1616, 1709
BseMI	GCAATG	5 cut(s)	703, 780, 986, 1464, 1527
BseMII	CTCAG	6 cut(s)	28, 663, 855, 899, 927, 1427
BseNI	ACTGG	3 cut(s)	724, 1172, 1194
BseRI	GAGGAG	6 cut(s)	207, 210, 213, 216, 219, 368
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	4 cut(s)	172, 175, 192, 893
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	2 cut(s)	162, 199
Bsh1285I	CGRYCG	1 cut(s)	284
BshFI	GGCC	8 cut(s)	300, 323, 367, 486, 546, 954, 1269, 1702
BshNI	GGYRCC	2 cut(s)	77, 421
BshTI	ACCGGT	1 cut(s)	1472
BsiEI	CGRYCG	1 cut(s)	284
BsiHKAI	GWGCWC	5 cut(s)	26, 1039, 1171, 1480, 1686
BsiHKCI	CYCGRG	1 cut(s)	1479
BsiSI	CCGG	7 cut(s)	69, 108, 471, 477, 483, 630, 1473
BslFI	GGGAC	2 cut(s)	225, 699
BslI	CCNNNNNNNGG	6 cut(s)	107, 307, 389, 1031, 1616, 1709
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	225, 699
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	8 cut(s)	300, 323, 367, 486, 546, 954, 1269, 1702
BsoBI	CYCGRG	1 cut(s)	1479
Bsp1286I	GDGCHC	6 cut(s)	26, 338, 1039, 1171, 1480, 1686
Bsp13I	TCCGGA	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	1252, 1330
BspANI	GGCC	8 cut(s)	300, 323, 367, 486, 546, 954, 1269, 1702
BspCNI	CTCAG	6 cut(s)	27, 664, 856, 898, 928, 1428
BspEI	TCCGGA	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	1663
BspLI	GGNNCC	9 cut(s)	79, 423, 475, 481, 714, 715, 1009, 1533, 1701
BspPI	GGATC	1 cut(s)	1338
BspQI	GCTCTTC	1 cut(s)	686
BspT107I	GGYRCC	2 cut(s)	77, 421
BspTI	CTTAAG	1 cut(s)	416
BsrDI	GCAATG	5 cut(s)	703, 780, 986, 1464, 1527
BsrFI	RCCGGY	2 cut(s)	68, 1472
BsrI	ACTGG	3 cut(s)	724, 1172, 1194
BssAI	RCCGGY	2 cut(s)	68, 1472
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	2 cut(s)	1252, 1330
BssNAI	GTATAC	3 cut(s)	316, 1064, 1562
BssNI	GRCGYC	4 cut(s)	78, 422, 975, 1209
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	1 cut(s)	507
Bst1107I	GTATAC	3 cut(s)	316, 1064, 1562
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	3 cut(s)	28, 320, 1611
Bst4CI	ACNGT	4 cut(s)	239, 662, 1012, 1380
Bst6I	CTCTTC	2 cut(s)	106, 686
BstACI	GRCGYC	4 cut(s)	78, 422, 975, 1209
BstAFI	CTTAAG	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	70, 1704
BstDEI	CTNAG	7 cut(s)	14, 672, 864, 885, 936, 1436, 1631
BstENI	CCTNNNNNAGG	3 cut(s)	387, 1029, 1707
BstF5I	GGATG	5 cut(s)	235, 368, 1045, 1223, 1609
BstH2I	RGCGCY	3 cut(s)	81, 425, 1294
BstHHI	GCGC	3 cut(s)	80, 424, 1293
BstKTI	GATC	2 cut(s)	1255, 1333
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	2 cut(s)	1252, 1330
BstMCI	CGRYCG	1 cut(s)	284
BstNI	CCWGG	3 cut(s)	28, 320, 1611
BstNSI	RCATGY	1 cut(s)	1568
BstPAI	GACNNNNGTC	1 cut(s)	286
BstSCI	CCNGG	3 cut(s)	26, 318, 1609
BstSFI	CTRYAG	1 cut(s)	1239
BstSLI	GKGCMC	1 cut(s)	338
BstSNI	TACGTA	1 cut(s)	518
BstV1I	GCAGC	4 cut(s)	172, 175, 192, 893
BstV2I	GAAGAC	2 cut(s)	737, 1130
BstX2I	RGATCY	1 cut(s)	1252
BstYI	RGATCY	1 cut(s)	1252
BstZ17I	GTATAC	3 cut(s)	316, 1064, 1562
BsuI	GTATCC	2 cut(s)	115, 1066
BsuRI	GGCC	8 cut(s)	300, 323, 367, 486, 546, 954, 1269, 1702
BtsCI	GGATG	5 cut(s)	235, 368, 1045, 1223, 1609
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	6 cut(s)	123, 667, 717, 1201, 1433, 1605
Cac8I	GCNNGC	2 cut(s)	70, 1704
CciI	TCATGA	1 cut(s)	1663
CfoI	GCGC	3 cut(s)	80, 424, 1293
Cfr10I	RCCGGY	2 cut(s)	68, 1472
Cfr13I	GGNCC	7 cut(s)	30, 298, 627, 713, 1191, 1345, 1700
CseI	GACGC	2 cut(s)	964, 1217
CsiI	ACCWGGT	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	211, 1381
CspAI	ACCGGT	1 cut(s)	1472
CviAII	CATG	5 cut(s)	1186, 1399, 1565, 1664, 1687
CviQI	GTAC	2 cut(s)	211, 1381
DdeI	CTNAG	7 cut(s)	14, 672, 864, 885, 936, 1436, 1631
DinI	GGCGCC	2 cut(s)	79, 423
DpnI	GATC	2 cut(s)	1254, 1332
DpnII	GATC	2 cut(s)	1252, 1330
DraI	TTTAAA	1 cut(s)	1323
EaeI	YGGCCR	3 cut(s)	484, 544, 952
Eam1104I	CTCTTC	2 cut(s)	106, 686
EarI	CTCTTC	2 cut(s)	106, 686
EciI	GGCGGA	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	1037
Eco105I	TACGTA	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	1039
Eco32I	GATATC	1 cut(s)	1084
Eco47I	GGWCC	5 cut(s)	30, 627, 713, 1191, 1345
Eco53kI	GAGCTC	1 cut(s)	1037
Eco57I	CTGAAG	1 cut(s)	1728
Eco88I	CYCGRG	1 cut(s)	1479
EcoICRI	GAGCTC	1 cut(s)	1037
EcoNI	CCTNNNNNAGG	3 cut(s)	387, 1029, 1707
EcoO109I	RGGNCCY	4 cut(s)	30, 713, 1345, 1700
EcoRII	CCWGG	3 cut(s)	26, 318, 1609
EcoRV	GATATC	1 cut(s)	1084
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	1039
EgeI	GGCGCC	2 cut(s)	79, 423
EheI	GGCGCC	2 cut(s)	79, 423
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	5 cut(s)	1189, 1402, 1568, 1667, 1690
FaqI	GGGAC	2 cut(s)	225, 699
FatI	CATG	5 cut(s)	1185, 1398, 1564, 1663, 1686
FauNDI	CATATG	1 cut(s)	1094
FblI	GTMKAC	4 cut(s)	315, 900, 1063, 1561
FokI	GGATG	5 cut(s)	242, 355, 1032, 1210, 1616
FriOI	GRGCYC	1 cut(s)	1039
FspBI	CTAG	3 cut(s)	47, 129, 752
GlaI	GCGC	3 cut(s)	79, 423, 1292
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	2 cut(s)	987, 1593
HaeII	RGCGCY	3 cut(s)	81, 425, 1294
HaeIII	GGCC	8 cut(s)	300, 323, 367, 486, 546, 954, 1269, 1702
HapII	CCGG	7 cut(s)	69, 108, 471, 477, 483, 630, 1473
HgaI	GACGC	2 cut(s)	964, 1217
HhaI	GCGC	3 cut(s)	80, 424, 1293
Hin1I	GRCGYC	4 cut(s)	78, 422, 975, 1209
Hin1II	CATG	5 cut(s)	1189, 1402, 1568, 1667, 1690
Hin6I	GCGC	3 cut(s)	78, 422, 1291
HinP1I	GCGC	3 cut(s)	78, 422, 1291
HindIII	AAGCTT	1 cut(s)	413
HpaII	CCGG	7 cut(s)	69, 108, 471, 477, 483, 630, 1473
HphI	GGTGA	2 cut(s)	1067, 1649
Hpy166II	GTNNAC	6 cut(s)	235, 316, 901, 1064, 1376, 1562
Hpy188I	TCNGA	7 cut(s)	17, 191, 460, 466, 888, 1041, 1135
Hpy8I	GTNNAC	6 cut(s)	235, 316, 901, 1064, 1376, 1562
Hpy99I	CGWCG	2 cut(s)	404, 1211
HpyAV	CCTTC	7 cut(s)	364, 618, 925, 998, 1447, 1634, 1703
HpyCH4III	ACNGT	4 cut(s)	239, 662, 1012, 1380
HpyCH4IV	ACGT	1 cut(s)	517
HpyF3I	CTNAG	7 cut(s)	14, 672, 864, 885, 936, 1436, 1631
HpySE526I	ACGT	1 cut(s)	517
Hsp92I	GRCGYC	4 cut(s)	78, 422, 975, 1209
Hsp92II	CATG	5 cut(s)	1189, 1402, 1568, 1667, 1690
HspAI	GCGC	3 cut(s)	78, 422, 1291
KasI	GGCGCC	2 cut(s)	77, 421
KflI	GGGWCCC	1 cut(s)	713
Kpn2I	TCCGGA	1 cut(s)	107
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Kzo9I	GATC	2 cut(s)	1252, 1330
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	7 cut(s)	381, 1034, 1166, 1612, 1619, 1651, 1735
Lsp1109I	GCAGC	4 cut(s)	172, 175, 192, 893
LweI	GCATC	4 cut(s)	236, 778, 1054, 1594
MabI	ACCWGGT	1 cut(s)	26
MaeI	CTAG	3 cut(s)	47, 129, 752
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	2 cut(s)	121, 1216
MalI	GATC	2 cut(s)	1254, 1332
MboI	GATC	2 cut(s)	1252, 1330
MboII	GAAGA	9 cut(s)	123, 603, 703, 742, 836, 1135, 1143, 1595, 1652
MflI	RGATCY	1 cut(s)	1252
MhlI	GDGCHC	6 cut(s)	26, 338, 1039, 1171, 1480, 1686
MluCI	AATT	5 cut(s)	340, 1280, 1412, 1626, 1655
Mly113I	GGCGCC	2 cut(s)	78, 422
MlyI	GAGTC	2 cut(s)	496, 683
MmeI	TCCRAC	6 cut(s)	169, 666, 799, 981, 1003, 1212
MroI	TCCGGA	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	6 cut(s)	417, 707, 800, 944, 1017, 1322
MslI	CAYNNNNRTG	1 cut(s)	1050
MspA1I	CMGCKG	2 cut(s)	166, 286
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	7 cut(s)	69, 108, 471, 477, 483, 630, 1473
MspR9I	CCNGG	3 cut(s)	28, 320, 1611
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	3 cut(s)	28, 320, 1611
NaeI	GCCGGC	1 cut(s)	70
NarI	GGCGCC	2 cut(s)	78, 422
NdeI	CATATG	1 cut(s)	1094
NdeII	GATC	2 cut(s)	1252, 1330
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	5 cut(s)	1189, 1402, 1568, 1667, 1690
NlaIV	GGNNCC	9 cut(s)	79, 423, 475, 481, 714, 715, 1009, 1533, 1701
NmeAIII	GCCGAG	2 cut(s)	326, 980
NmuCI	GTSAC	2 cut(s)	121, 1216
NspI	RCATGY	1 cut(s)	1568
PaeR7I	CTCGAG	1 cut(s)	1479
PagI	TCATGA	1 cut(s)	1663
PciSI	GCTCTTC	1 cut(s)	686
PctI	GAATGC	1 cut(s)	607
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	8 cut(s)	96, 328, 461, 467, 638, 833, 1148, 1235
PfoI	TCCNGGA	1 cut(s)	1609
PinAI	ACCGGT	1 cut(s)	1472
PleI	GAGTC	2 cut(s)	496, 682
PluTI	GGCGCC	2 cut(s)	81, 425
PpsI	GAGTC	2 cut(s)	496, 682
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	3 cut(s)	30, 713, 1345
PshAI	GACNNNNGTC	1 cut(s)	286
PshBI	ATTAAT	1 cut(s)	707
PsiI	TTATAA	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	1039
Psp5II	RGGWCCY	3 cut(s)	30, 713, 1345
Psp6I	CCWGG	3 cut(s)	26, 318, 1609
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	3 cut(s)	26, 318, 1609
PspN4I	GGNNCC	9 cut(s)	79, 423, 475, 481, 714, 715, 1009, 1533, 1701
PspPI	GGNCC	7 cut(s)	30, 298, 627, 713, 1191, 1345, 1700
PspPPI	RGGWCCY	3 cut(s)	30, 713, 1345
PspXI	VCTCGAGB	1 cut(s)	1479
PsrI	GAACNNNNNNTAC	2 cut(s)	1005, 1037
PsuI	RGATCY	1 cut(s)	1252
RsaI	GTAC	2 cut(s)	212, 1382
RsaNI	GTAC	2 cut(s)	211, 1381
RseI	CAYNNNNRTG	1 cut(s)	1050
SacI	GAGCTC	1 cut(s)	1039
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	6 cut(s)	417, 707, 800, 944, 1017, 1322
Sau3AI	GATC	2 cut(s)	1252, 1330
Sau96I	GGNCC	7 cut(s)	30, 298, 627, 713, 1191, 1345, 1700
SchI	GAGTC	2 cut(s)	496, 683
ScrFI	CCNGG	3 cut(s)	28, 320, 1611
SduI	GDGCHC	6 cut(s)	26, 338, 1039, 1171, 1480, 1686
SexAI	ACCWGGT	1 cut(s)	26
SfaNI	GCATC	4 cut(s)	236, 778, 1054, 1594
SfcI	CTRYAG	1 cut(s)	1239
SfoI	GGCGCC	2 cut(s)	79, 423
Sfr274I	CTCGAG	1 cut(s)	1479
SgrAI	CRCCGGYG	1 cut(s)	1472
SinI	GGWCC	5 cut(s)	30, 627, 713, 1191, 1345
SlaI	CTCGAG	1 cut(s)	1479
SmiMI	CAYNNNNRTG	1 cut(s)	1050
SmlI	CTYRAG	2 cut(s)	416, 1479
SmoI	CTYRAG	2 cut(s)	416, 1479
SnaBI	TACGTA	1 cut(s)	518
SpeI	ACTAGT	1 cut(s)	46
Sse9I	AATT	5 cut(s)	340, 1280, 1412, 1626, 1655
SspDI	GGCGCC	2 cut(s)	77, 421
SspI	AATATT	3 cut(s)	840, 949, 1507
SspMI	CTAG	3 cut(s)	47, 129, 752
SstI	GAGCTC	1 cut(s)	1039
StyD4I	CCNGG	3 cut(s)	26, 318, 1609
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	4 cut(s)	239, 662, 1012, 1380
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	6 cut(s)	251, 275, 402, 1480, 1527, 1676
TaqII	GACCGA	1 cut(s)	1220
TasI	AATT	5 cut(s)	340, 1280, 1412, 1626, 1655
TatI	WGTACW	1 cut(s)	1380
TauI	GCSGC	8 cut(s)	56, 59, 62, 65, 68, 169, 172, 427
TfiI	GAWTC	8 cut(s)	96, 328, 461, 467, 638, 833, 1148, 1235
Tru1I	TTAA	6 cut(s)	417, 707, 800, 944, 1017, 1322
Tru9I	TTAA	6 cut(s)	417, 707, 800, 944, 1017, 1322
TscAI	CASTG	6 cut(s)	130, 667, 724, 1201, 1440, 1605
TseFI	GTSAC	2 cut(s)	121, 1216
TseI	GCWGC	4 cut(s)	160, 163, 180, 881
Tsp45I	GTSAC	2 cut(s)	121, 1216
TspDTI	ATGAA	6 cut(s)	924, 1081, 1415, 1596, 1652, 1680
TspGWI	ACGGA	2 cut(s)	762, 872
TspRI	CASTG	6 cut(s)	130, 667, 724, 1201, 1440, 1605
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	5 cut(s)	30, 627, 713, 1191, 1345
VspI	ATTAAT	1 cut(s)	707
XagI	CCTNNNNNAGG	3 cut(s)	387, 1029, 1707
XapI	RAATTY	2 cut(s)	1280, 1626
XceI	RCATGY	1 cut(s)	1568
XhoI	CTCGAG	1 cut(s)	1479
XmiI	GTMKAC	4 cut(s)	315, 900, 1063, 1561
XspI	CTAG	3 cut(s)	47, 129, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.