Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003035

Physical Location & Seq

Genomic Coordinates Reverse (-)

39132911 .. 39139338

Gene Structure 6428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG324800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGTTTCACACTCTCAGATTGAGCGCCAGGTCCTCCCTCACACGACTAATCGCCGCCGCCGCCGGCACAAGCGCCACCGCAACCACCGGAATCTCCGTATCCGGAAGAGTTGCTGTCACTGCTAGTGGTGGTGGTGGTGGTGGTGCAGAAGCAGCACAACCCCAGCAACGGCGGCACAAGTGCAGCGAAGTCGGAGGAGGAGAGTACGAGAACATAAGGGCGGACGTGAACTGTCCCCGATGCTCGAAGCAAATGGCGGTCCTGTTCTCGACCCGACCGCTGTCGATTACTGGCCGAGAGACGGGGGTTTACCAGGCCGTGAATCTGTGCCCCAATTGCAACACCGCCTTCTATTTCAGGCCATCCAAGCTCCTCCCTTTACAAGGCACTTTCGTCGAGATTGGTAGGCTTAAGGCGCCGCCCACTCATGCCTCTCCTCATTCCACTTCCGATTCCGATTCCGGTTCCGGTTCCGGCCAGAAAGACCTCTTGACTCCCAAGGAGATATGTAAGGCTCTTGATGACTTTGTCATCGGCCAAGAAAGAGCCAAAAAGGTGCTCTCGGTTGCGGTTTATAACCACTACAAAAGAATACGGCATTCTTCCCAACAGAGAAGGTCCGGTGTAGATTCAGCTGATTGTAAGCCTCACAGTGTTGATACTGATTCTGTTGAGTTGGAGAAGAGCAATGTATTGTTAATGGGTCCCACTGGTTCAGGGAAGACTTTACTTGCAAAAACACTAGCCCGTGTTGTGAATGTTCCATTTGCCATTGCTGATGCAACAACATTAACACAGGCAAGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAGACTTCTTACAGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGATGAAGTTGATAAGATAATAAAGAAGGCTGAGAGCTTAAATATTGGCCGAGATGTGTCTGGAGAGGGCGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACCGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAGCATCCTCGTGGTGATAGTATACAGATAGATACAAAGGATATCCTTTTCATATGTGGTGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCAAACATGAGGTCCAGTGGATTGACTGACGCCATAGTGACATCATCCTTGTTGGAATCTGTAGAAAGTGGAGATCTTATTGCTTATGGCCTGATACCTGAATTTGTTGGGCGCTTTCCTATTTTAGTGAGTTTGTCATCTTTAAACGAGGATCAACTTGTTCAGGTCCTCACAGAACCTAAAAATGCTCTTGGTAAGCAGTACAAGATGATGTTTGACATGAACAATGTCAAATTACATTTTACTGACGATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCTCGAGGTTTGAGAGCCATATTGGAGAATATTCTTACAGAAGCAATGTTCGAGGTTCCAGACATCAAGACAGAAACCAATAGTATACATGCAGTTCTGGTTGATGAAGAAGCTGTTGGGTCAGTGGATGCTCCAGGACGAGGAGCAAAAATTCTTAGTGGTGAAGGCATAGTGGAGCAATTTCTTCATGAAACAAAGTCGAGAGAGCACATGGGAAAGCAGGGGGCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

566

Amino Acids

60.68

Weight (kDa)

6.9

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	227 - 431	7.9e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	231 - 336	3.3e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	438 - 507	2e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49840 AT5G49840 AT5G49840 AT5G49840
fragaria_vesca	FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740
malus_domestica	MD08G1248400.v1.1
prunus_persica	Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1
pyrus_communis	pycom08g21520
rosa_chinensis	RchiOBHm_Chr7g0219511
rosa_laevigata	RLG00000002286
rosa_multiflora	Rmu_sc0003047.1_g000013
rosa_roxburghii	Rroxscaffold_3G00240000
rosa_rugosa	Rorug07G0185800 Rorug07G0185900
rosa_samantha	Rh7AG328400 Rh7BG318900 Rh7CG345800 Rh7DG324800
rosa_wichuraiana	Rw7G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	576
AccB1I	GGYRCC	1 cut(s)	415
AccI	GTMKAC	3 cut(s)	891, 1054, 1552
AccIII	TCCGGA	1 cut(s)	101
AclWI	GGATC	1 cut(s)	1329
AcoI	YGGCCR	4 cut(s)	292, 475, 535, 943
AcsI	RAATTY	2 cut(s)	1271, 1617
AcyI	GRCGYC	3 cut(s)	416, 966, 1200
AfaI	GTAC	2 cut(s)	206, 1373
AfiI	CCNNNNNNNGG	5 cut(s)	168, 301, 383, 1022, 1607
AflII	CTTAAG	1 cut(s)	410
AgeI	ACCGGT	1 cut(s)	1463
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	3 cut(s)	26, 312, 1600
AjuI	GAANNNNNNNTTGG	2 cut(s)	1566, 1598
AloI	GAACNNNNNNTCC	2 cut(s)	1149, 1181
AluBI	AGCT	7 cut(s)	370, 635, 854, 875, 933, 1028, 1580
AluI	AGCT	7 cut(s)	370, 635, 854, 875, 933, 1028, 1580
Alw21I	GWGCWC	5 cut(s)	561, 1030, 1162, 1471, 1677
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	1329
AlwNI	CAGNNNCTG	1 cut(s)	854
Ama87I	CYCGRG	1 cut(s)	1470
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	8 cut(s)	292, 315, 359, 475, 535, 943, 1258, 1692
ApeKI	GCWGC	3 cut(s)	152, 183, 872
ApoI	RAATTY	2 cut(s)	1271, 1617
ArsI	GACNNNNNNTTYG	2 cut(s)	1166, 1198
AsiGI	ACCGGT	1 cut(s)	1463
AspLEI	GCGC	4 cut(s)	26, 74, 418, 1284
AspS9I	GGNCC	7 cut(s)	30, 259, 618, 704, 1182, 1336, 1692
AsuHPI	GGTGA	2 cut(s)	1058, 1640
AvaI	CYCGRG	1 cut(s)	1470
AvaII	GGWCC	6 cut(s)	30, 259, 618, 704, 1182, 1336
BaeGI	GKGCMC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	1030
BauI	CACGAG	1 cut(s)	1041
BbsI	GAAGAC	2 cut(s)	728, 1121
Bbv12I	GWGCWC	5 cut(s)	561, 1030, 1162, 1471, 1677
BbvI	GCAGC	3 cut(s)	164, 195, 884
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	3 cut(s)	185, 302, 611
BcgI	CGANNNNNNTGC	4 cut(s)	172, 206, 376, 410
BciT130I	CCWGG	3 cut(s)	28, 314, 1602
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	123, 743
BfmI	CTRYAG	1 cut(s)	1230
BfoI	RGCGCY	4 cut(s)	27, 75, 419, 1285
BfrI	CTTAAG	1 cut(s)	410
BfuI	GTATCC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	1243
BisI	GCNGC	8 cut(s)	54, 57, 60, 153, 173, 184, 419, 873
BlsI	GCNGC	8 cut(s)	55, 58, 61, 154, 174, 185, 420, 874
Bme1390I	CCNGG	3 cut(s)	28, 314, 1602
Bme18I	GGWCC	6 cut(s)	30, 259, 618, 704, 1182, 1336
BmeT110I	CYCGRG	1 cut(s)	1470
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	7 cut(s)	30, 259, 618, 704, 1182, 1336, 1692
BmiI	GGNNCC	8 cut(s)	417, 466, 472, 705, 706, 1000, 1524, 1693
BmrFI	CCNGG	3 cut(s)	28, 314, 1602
BmsI	GCATC	5 cut(s)	230, 769, 1045, 1411, 1585
BoxI	GACNNNNGTC	1 cut(s)	280
BpiI	GAAGAC	2 cut(s)	728, 1121
BpmI	CTGGAG	2 cut(s)	978, 1584
BsaHI	GRCGYC	3 cut(s)	416, 966, 1200
BsaJI	CCNNGG	1 cut(s)	498
BsaWI	WCCGGW	6 cut(s)	86, 101, 461, 467, 620, 1463
BsaXI	ACNNNNNCTCC	6 cut(s)	804, 834, 951, 981, 1149, 1179
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 301, 383, 1022, 1607
Bse118I	RCCGGY	2 cut(s)	62, 1463
Bse1I	ACTGG	4 cut(s)	295, 715, 1163, 1185
Bse3DI	GCAATG	5 cut(s)	694, 771, 977, 1455, 1518
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	3 cut(s)	28, 314, 1602
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	4 cut(s)	362, 1036, 1214, 1600
BseLI	CCNNNNNNNGG	5 cut(s)	168, 301, 383, 1022, 1607
BseMI	GCAATG	5 cut(s)	694, 771, 977, 1455, 1518
BseMII	CTCAG	5 cut(s)	28, 846, 890, 918, 1418
BseNI	ACTGG	4 cut(s)	295, 715, 1163, 1185
BseRI	GAGGAG	5 cut(s)	210, 213, 362, 426, 1623
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	164, 195, 884
BseYI	CCCAGC	1 cut(s)	162
BsgI	GTGCAG	2 cut(s)	165, 202
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	8 cut(s)	294, 317, 361, 477, 537, 945, 1260, 1694
BshNI	GGYRCC	1 cut(s)	415
BshTI	ACCGGT	1 cut(s)	1463
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	5 cut(s)	561, 1030, 1162, 1471, 1677
BsiHKCI	CYCGRG	1 cut(s)	1470
BsiSI	CCGG	8 cut(s)	63, 87, 102, 462, 468, 474, 621, 1464
BslFI	GGGAC	2 cut(s)	219, 690
BslI	CCNNNNNNNGG	5 cut(s)	168, 301, 383, 1022, 1607
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	2 cut(s)	219, 690
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	8 cut(s)	294, 317, 361, 477, 537, 945, 1260, 1694
BsoBI	CYCGRG	1 cut(s)	1470
Bsp1286I	GDGCHC	6 cut(s)	332, 561, 1030, 1162, 1471, 1677
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	2 cut(s)	1243, 1321
BspANI	GGCC	8 cut(s)	294, 317, 361, 477, 537, 945, 1260, 1694
BspCNI	CTCAG	5 cut(s)	27, 847, 889, 919, 1419
BspEI	TCCGGA	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	1654
BspLI	GGNNCC	8 cut(s)	417, 466, 472, 705, 706, 1000, 1524, 1693
BspPI	GGATC	1 cut(s)	1329
BspQI	GCTCTTC	1 cut(s)	677
BspT107I	GGYRCC	1 cut(s)	415
BspTI	CTTAAG	1 cut(s)	410
BsrDI	GCAATG	5 cut(s)	694, 771, 977, 1455, 1518
BsrFI	RCCGGY	2 cut(s)	62, 1463
BsrI	ACTGG	4 cut(s)	295, 715, 1163, 1185
BssAI	RCCGGY	2 cut(s)	62, 1463
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	2 cut(s)	1243, 1321
BssNAI	GTATAC	2 cut(s)	1055, 1553
BssNI	GRCGYC	3 cut(s)	416, 966, 1200
BssSI	CACGAG	1 cut(s)	1041
BssT1I	CCWWGG	1 cut(s)	498
Bst1107I	GTATAC	2 cut(s)	1055, 1553
Bst2BI	CACGAG	1 cut(s)	1041
Bst2UI	CCWGG	3 cut(s)	28, 314, 1602
Bst4CI	ACNGT	3 cut(s)	233, 653, 1003
Bst6I	CTCTTC	2 cut(s)	100, 677
BstACI	GRCGYC	3 cut(s)	416, 966, 1200
BstAFI	CTTAAG	1 cut(s)	410
BstC8I	GCNNGC	2 cut(s)	64, 1696
BstDEI	CTNAG	6 cut(s)	14, 855, 876, 927, 1427, 1622
BstENI	CCTNNNNNAGG	2 cut(s)	381, 1020
BstF5I	GGATG	4 cut(s)	362, 1036, 1214, 1600
BstH2I	RGCGCY	4 cut(s)	27, 75, 419, 1285
BstHHI	GCGC	4 cut(s)	26, 74, 418, 1284
BstKTI	GATC	2 cut(s)	1246, 1324
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	1243, 1321
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 119, 152, 172, 336, 367, 415, 1445
BstNI	CCWGG	3 cut(s)	28, 314, 1602
BstNSI	RCATGY	1 cut(s)	1559
BstPAI	GACNNNNGTC	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	26, 312, 1600
BstSFI	CTRYAG	1 cut(s)	1230
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	164, 195, 884
BstV2I	GAAGAC	2 cut(s)	728, 1121
BstX2I	RGATCY	1 cut(s)	1243
BstYI	RGATCY	1 cut(s)	1243
BstZ17I	GTATAC	2 cut(s)	1055, 1553
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	8 cut(s)	294, 317, 361, 477, 537, 945, 1260, 1694
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	4 cut(s)	362, 1036, 1214, 1600
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	6 cut(s)	117, 658, 708, 1192, 1424, 1596
Cac8I	GCNNGC	2 cut(s)	64, 1696
CaiI	CAGNNNCTG	1 cut(s)	854
CciI	TCATGA	1 cut(s)	1654
CfoI	GCGC	4 cut(s)	26, 74, 418, 1284
Cfr10I	RCCGGY	2 cut(s)	62, 1463
Cfr13I	GGNCC	7 cut(s)	30, 259, 618, 704, 1182, 1336, 1692
CseI	GACGC	2 cut(s)	955, 1208
Csp6I	GTAC	2 cut(s)	205, 1372
CspAI	ACCGGT	1 cut(s)	1463
CviAII	CATG	6 cut(s)	428, 1177, 1390, 1556, 1655, 1678
CviQI	GTAC	2 cut(s)	205, 1372
DdeI	CTNAG	6 cut(s)	14, 855, 876, 927, 1427, 1622
DinI	GGCGCC	1 cut(s)	417
DpnI	GATC	2 cut(s)	1245, 1323
DpnII	GATC	2 cut(s)	1243, 1321
DraI	TTTAAA	1 cut(s)	1314
EaeI	YGGCCR	4 cut(s)	292, 475, 535, 943
Eam1104I	CTCTTC	2 cut(s)	100, 677
EarI	CTCTTC	2 cut(s)	100, 677
EciI	GGCGGA	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	1030
Eco32I	GATATC	1 cut(s)	1075
Eco47I	GGWCC	6 cut(s)	30, 259, 618, 704, 1182, 1336
Eco53kI	GAGCTC	1 cut(s)	1028
Eco88I	CYCGRG	1 cut(s)	1470
EcoICRI	GAGCTC	1 cut(s)	1028
EcoNI	CCTNNNNNAGG	2 cut(s)	381, 1020
EcoO109I	RGGNCCY	4 cut(s)	30, 704, 1336, 1692
EcoRII	CCWGG	3 cut(s)	26, 312, 1600
EcoRV	GATATC	1 cut(s)	1075
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	1030
EgeI	GGCGCC	1 cut(s)	417
EheI	GGCGCC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	6 cut(s)	431, 1180, 1393, 1559, 1658, 1681
FaqI	GGGAC	2 cut(s)	219, 690
FatI	CATG	6 cut(s)	427, 1176, 1389, 1555, 1654, 1677
FauNDI	CATATG	1 cut(s)	1085
FblI	GTMKAC	3 cut(s)	891, 1054, 1552
Fnu4HI	GCNGC	8 cut(s)	54, 57, 60, 153, 173, 184, 419, 873
FokI	GGATG	4 cut(s)	349, 1023, 1201, 1607
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	8 cut(s)	54, 57, 60, 153, 173, 184, 419, 873
FspBI	CTAG	2 cut(s)	123, 743
GlaI	GCGC	4 cut(s)	25, 73, 417, 1283
GluI	GCNGC	8 cut(s)	54, 57, 60, 153, 173, 184, 419, 873
GsaI	CCCAGC	1 cut(s)	166
GsuI	CTGGAG	2 cut(s)	978, 1584
HaeII	RGCGCY	4 cut(s)	27, 75, 419, 1285
HaeIII	GGCC	8 cut(s)	294, 317, 361, 477, 537, 945, 1260, 1694
HapII	CCGG	8 cut(s)	63, 87, 102, 462, 468, 474, 621, 1464
HgaI	GACGC	2 cut(s)	955, 1208
HhaI	GCGC	4 cut(s)	26, 74, 418, 1284
Hin1I	GRCGYC	3 cut(s)	416, 966, 1200
Hin1II	CATG	6 cut(s)	431, 1180, 1393, 1559, 1658, 1681
Hin6I	GCGC	4 cut(s)	24, 72, 416, 1282
HinP1I	GCGC	4 cut(s)	24, 72, 416, 1282
HpaII	CCGG	8 cut(s)	63, 87, 102, 462, 468, 474, 621, 1464
HphI	GGTGA	2 cut(s)	1058, 1640
Hpy166II	GTNNAC	5 cut(s)	229, 310, 892, 1055, 1553
Hpy188I	TCNGA	7 cut(s)	17, 194, 451, 457, 879, 1032, 1126
Hpy8I	GTNNAC	5 cut(s)	229, 310, 892, 1055, 1553
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	6 cut(s)	358, 609, 916, 989, 1438, 1625
HpyCH4III	ACNGT	3 cut(s)	233, 653, 1003
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	9 cut(s)	146, 183, 339, 734, 782, 1172, 1424, 1439, 1559
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 119, 152, 172, 336, 367, 415, 1445
HpyF3I	CTNAG	6 cut(s)	14, 855, 876, 927, 1427, 1622
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	3 cut(s)	416, 966, 1200
Hsp92II	CATG	6 cut(s)	431, 1180, 1393, 1559, 1658, 1681
HspAI	GCGC	4 cut(s)	24, 72, 416, 1282
KasI	GGCGCC	1 cut(s)	415
KflI	GGGWCCC	1 cut(s)	704
Kpn2I	TCCGGA	1 cut(s)	101
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	1243, 1321
LguI	GCTCTTC	1 cut(s)	677
LmnI	GCTCC	6 cut(s)	375, 1025, 1157, 1603, 1610, 1642
Lsp1109I	GCAGC	3 cut(s)	164, 195, 884
LweI	GCATC	5 cut(s)	230, 769, 1045, 1411, 1585
MaeI	CTAG	2 cut(s)	123, 743
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	2 cut(s)	115, 1207
MalI	GATC	2 cut(s)	1245, 1323
MboI	GATC	2 cut(s)	1243, 1321
MboII	GAAGA	9 cut(s)	117, 594, 694, 733, 827, 1126, 1134, 1586, 1643
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	1 cut(s)	1243
MhlI	GDGCHC	6 cut(s)	332, 561, 1030, 1162, 1471, 1677
MluCI	AATT	5 cut(s)	334, 1271, 1403, 1617, 1646
Mly113I	GGCGCC	1 cut(s)	416
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	6 cut(s)	172, 657, 790, 972, 994, 1203
MroI	TCCGGA	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	6 cut(s)	411, 698, 791, 935, 1008, 1313
MslI	CAYNNNNRTG	1 cut(s)	1041
MspA1I	CMGCKG	2 cut(s)	280, 635
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	8 cut(s)	63, 87, 102, 462, 468, 474, 621, 1464
MspR9I	CCNGG	3 cut(s)	28, 314, 1602
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	3 cut(s)	28, 314, 1602
MwoI	GCNNNNNNNGC	8 cut(s)	59, 119, 152, 172, 336, 367, 415, 1445
NaeI	GCCGGC	1 cut(s)	64
NarI	GGCGCC	1 cut(s)	416
NdeI	CATATG	1 cut(s)	1085
NdeII	GATC	2 cut(s)	1243, 1321
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	6 cut(s)	431, 1180, 1393, 1559, 1658, 1681
NlaIV	GGNNCC	8 cut(s)	417, 466, 472, 705, 706, 1000, 1524, 1693
NmeAIII	GCCGAG	2 cut(s)	320, 971
NmuCI	GTSAC	2 cut(s)	115, 1207
NspI	RCATGY	1 cut(s)	1559
PaeR7I	CTCGAG	1 cut(s)	1470
PagI	TCATGA	1 cut(s)	1654
PciSI	GCTCTTC	1 cut(s)	677
PctI	GAATGC	1 cut(s)	598
PdiI	GCCGGC	1 cut(s)	64
PfeI	GAWTC	9 cut(s)	90, 322, 452, 458, 629, 665, 824, 1139, 1226
PflFI	GACNNNGTC	1 cut(s)	527
PfoI	TCCNGGA	1 cut(s)	1600
PinAI	ACCGGT	1 cut(s)	1463
PkrI	GCNGC	8 cut(s)	55, 58, 61, 154, 174, 185, 420, 874
PleI	GAGTC	1 cut(s)	487
PluTI	GGCGCC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	487
PpuMI	RGGWCCY	3 cut(s)	30, 704, 1336
PshAI	GACNNNNGTC	1 cut(s)	280
PsiI	TTATAA	1 cut(s)	576
Psp124BI	GAGCTC	1 cut(s)	1030
Psp5II	RGGWCCY	3 cut(s)	30, 704, 1336
Psp6I	CCWGG	3 cut(s)	26, 312, 1600
PspFI	CCCAGC	1 cut(s)	162
PspGI	CCWGG	3 cut(s)	26, 312, 1600
PspN4I	GGNNCC	8 cut(s)	417, 466, 472, 705, 706, 1000, 1524, 1693
PspPI	GGNCC	7 cut(s)	30, 259, 618, 704, 1182, 1336, 1692
PspPPI	RGGWCCY	3 cut(s)	30, 704, 1336
PspXI	VCTCGAGB	1 cut(s)	1470
PsrI	GAACNNNNNNTAC	2 cut(s)	996, 1028
PstNI	CAGNNNCTG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	1243
PsyI	GACNNNGTC	1 cut(s)	527
PvuII	CAGCTG	1 cut(s)	635
RsaI	GTAC	2 cut(s)	206, 1373
RsaNI	GTAC	2 cut(s)	205, 1372
RseI	CAYNNNNRTG	1 cut(s)	1041
SacI	GAGCTC	1 cut(s)	1030
SapI	GCTCTTC	1 cut(s)	677
SaqAI	TTAA	6 cut(s)	411, 698, 791, 935, 1008, 1313
SatI	GCNGC	8 cut(s)	54, 57, 60, 153, 173, 184, 419, 873
Sau3AI	GATC	2 cut(s)	1243, 1321
Sau96I	GGNCC	7 cut(s)	30, 259, 618, 704, 1182, 1336, 1692
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	3 cut(s)	28, 314, 1602
SduI	GDGCHC	6 cut(s)	332, 561, 1030, 1162, 1471, 1677
SfaNI	GCATC	5 cut(s)	230, 769, 1045, 1411, 1585
SfcI	CTRYAG	1 cut(s)	1230
SfoI	GGCGCC	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	1470
SgrAI	CRCCGGYG	1 cut(s)	1463
SinI	GGWCC	6 cut(s)	30, 259, 618, 704, 1182, 1336
SlaI	CTCGAG	1 cut(s)	1470
SmiMI	CAYNNNNRTG	1 cut(s)	1041
SmlI	CTYRAG	2 cut(s)	410, 1470
SmoI	CTYRAG	2 cut(s)	410, 1470
Sse9I	AATT	5 cut(s)	334, 1271, 1403, 1617, 1646
SspDI	GGCGCC	1 cut(s)	415
SspI	AATATT	3 cut(s)	831, 940, 1498
SspMI	CTAG	2 cut(s)	123, 743
SstI	GAGCTC	1 cut(s)	1030
StyD4I	CCNGG	3 cut(s)	26, 312, 1600
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	233, 653, 1003
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	7 cut(s)	245, 269, 284, 396, 1471, 1518, 1667
TasI	AATT	5 cut(s)	334, 1271, 1403, 1617, 1646
TatI	WGTACW	1 cut(s)	1371
TauI	GCSGC	5 cut(s)	56, 59, 62, 175, 421
TfiI	GAWTC	9 cut(s)	90, 322, 452, 458, 629, 665, 824, 1139, 1226
Tru1I	TTAA	6 cut(s)	411, 698, 791, 935, 1008, 1313
Tru9I	TTAA	6 cut(s)	411, 698, 791, 935, 1008, 1313
TscAI	CASTG	6 cut(s)	124, 658, 715, 1192, 1431, 1596
TseFI	GTSAC	2 cut(s)	115, 1207
TseI	GCWGC	3 cut(s)	152, 183, 872
Tsp45I	GTSAC	2 cut(s)	115, 1207
TspDTI	ATGAA	6 cut(s)	915, 1072, 1406, 1587, 1643, 1671
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	6 cut(s)	124, 658, 715, 1192, 1431, 1596
Tth111I	GACNNNGTC	1 cut(s)	527
Vha464I	CTTAAG	1 cut(s)	410
VpaK11BI	GGWCC	6 cut(s)	30, 259, 618, 704, 1182, 1336
XagI	CCTNNNNNAGG	2 cut(s)	381, 1020
XapI	RAATTY	2 cut(s)	1271, 1617
XceI	RCATGY	1 cut(s)	1559
XhoI	CTCGAG	1 cut(s)	1470
XmiI	GTMKAC	3 cut(s)	891, 1054, 1552
XspI	CTAG	2 cut(s)	123, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.