Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003035

Physical Location & Seq

Genomic Coordinates Reverse (-)

37742411 .. 37748802

Gene Structure 6392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG328400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGTTTCACACTCTCAGATTGAGCACCAGGTCCTCCCTCACACGACTAATCGCCGCCGCCGGCACAAGCGCCACCGCAACCACCAGAATCTCCGTATCCGGAAGAGTTGCTGTCACTGCTAGTGGTGGTGGTGGTGCAGAAGCAGCACAACCCCAGCAGCGGCGGCACAAGTGCAGCGAAGTCGGAGGAGGAGGAGGAGGAGGAGAGTACGAGAACATACGGGCGGACGTGAACTGTCCCCGATGCTCGAAGCAAATGGCGGTTCTGTTCTCGACCCGACCGCTGTCGATTACGGGCCGAGAGACGGGGGTTTACCAGGCCGTGAATCTGTGCCCCAATTGCAACACCGCCTTCTATTTCAGGCCATCCAAGCTCCTCCCTTTGCAAGGCACTTTCCTCGAGATTGGTAGGCTTAAGGCGCCGCCCACTCATGCCTCCCCTCATTCCACTTCCAATTCCAATTCCGATTCCGGTTCCGGTTCCGGCCAGAAAGACCTCTTGACTCCCAAGGAGATATGTAAGGCTCTTGATGACTTTGTCATCGGCCAAGAAAGAGCCAAAAAGGTGCTCTCGGTTGCGGTTTATAACCACTACAAAAGAATACGGCATTCTTCCCAACAGAGAAGGTCTGGTGTAGATTCAGTTGATTGTAAACCTCACAGTGTTGATACTGATTCTGTTGAGTTGGAGAAGAGCAATGTATTATTGATGGGTCCCACTGGTTCAGGGAAGACTTTACTTGCAAAAACACTAGCCCGTGTTGTGAATGTTCCATTTGCCATTGCTGATGCAACAACATTAACACAGGCAAGTTATGTTGGAGAAGATGTGGAATCAATATTGTATAGACTTCTTACGGAAGCTGAGTTTGATGTGGAAGCAGCTCAGAAAGGGATTGTCTACATTGATGAAGTTGATAAGATAATAAAGAAGGCTGAGAGCTTAAATATTGGCCGAGATGTGTCTGGAGAGGGCGTCCAACAGGCATTGCTGAAAATGTTGGAAGGAACCGTAGTTAATGTTCCTGATAAAGGAGCTCGGAAGCATCCTCGTGGTGATAGTATACAGATGGATACAAAGGATATCCTTTTCATATGTGGTGGGGCTTTTGTTGGTTTGGAGAAGACTATTTCAGAAAGACACCAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCAAACATGAGGTCCAGTGGATTGACTGACGCCATAGTGACATCATCCTTGTTGGAATCTGTAGAAAGTGGAGATCTTATTGCTTATGGCCTGATACCTGAATTTGTTGGGCGCTTTCCTATTTTAGTGAGTTTGTCATCTTTAAACGAGGATCAACTTGTTCAGGTCCTCACAGAACCTAAAAATGCTCTTGGTAAGCAGTACAAGATGATGTTTGACATGAACAATGTCAAATTACATTTTACTGACGATGCACTGAGATTGATTGCAAGGAAGGCAATGGCAAAGAACACCGGTGCTCGAGGTTTGAGAGCCATATTGGAGAATATTCTTACAGAAGCAATGTTCGAGGTTCCAGACATCAAGACAGAAACCAATAGTATACATGCAGTTCTGGTTGATGAAGAAGCTGTTGGGTCAGTGGATGCTCCAGGACGAGGAGCAAAAATTCTTAGTGGTGAAGGCATAGTGGAACAATTTCTTCATGAAACAAAGTCGAGAGAGCACATGGGAAAGCAGGGGCCTGCTGAAGGTGAATGTTCGCAAGAAGTTTTGGAGCTTCAATCAAGAGCCTTTGGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

587

Amino Acids

63.09

Weight (kDa)

6.69

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	230 - 434	2.6e-29	AAA domain (Cdc48 subfamily)
AAA	PF00004	234 - 339	3.5e-14	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	441 - 510	2.1e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49840 AT5G49840 AT5G49840 AT5G49840
fragaria_vesca	FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740 FvH4_5g27740
malus_domestica	MD08G1248400.v1.1
prunus_persica	Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1 Prupe.1G585800_v2.0.a1
pyrus_communis	pycom08g21520
rosa_chinensis	RchiOBHm_Chr7g0219511
rosa_laevigata	RLG00000002286
rosa_multiflora	Rmu_sc0003047.1_g000013
rosa_roxburghii	Rroxscaffold_3G00240000
rosa_rugosa	Rorug07G0185800 Rorug07G0185900
rosa_samantha	Rh7AG328400 Rh7BG318900 Rh7CG345800 Rh7DG324800
rosa_wichuraiana	Rw7G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	418
AccI	GTMKAC	3 cut(s)	900, 1063, 1561
AccIII	TCCGGA	1 cut(s)	98
AclWI	GGATC	1 cut(s)	1338
AcoI	YGGCCR	3 cut(s)	484, 544, 952
AcsI	RAATTY	2 cut(s)	1280, 1626
AcuI	CTGAAG	1 cut(s)	1728
AcyI	GRCGYC	3 cut(s)	419, 975, 1209
AfaI	GTAC	2 cut(s)	209, 1382
AfiI	CCNNNNNNNGG	6 cut(s)	159, 304, 386, 1031, 1616, 1709
AflII	CTTAAG	1 cut(s)	413
AgeI	ACCGGT	1 cut(s)	1472
AgsI	TTSAA	1 cut(s)	1742
AjiI	CACGTC	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	26, 315, 1609
AjuI	GAANNNNNNNTTGG	2 cut(s)	1575, 1607
AloI	GAACNNNNNNTCC	2 cut(s)	1158, 1190
AluBI	AGCT	7 cut(s)	373, 863, 884, 942, 1037, 1589, 1738
AluI	AGCT	7 cut(s)	373, 863, 884, 942, 1037, 1589, 1738
Alw21I	GWGCWC	6 cut(s)	26, 570, 1039, 1171, 1480, 1686
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	1 cut(s)	1338
Ama87I	CYCGRG	2 cut(s)	398, 1479
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	8 cut(s)	295, 318, 362, 484, 544, 952, 1267, 1700
ApeKI	GCWGC	4 cut(s)	143, 157, 174, 881
ApoI	RAATTY	2 cut(s)	1280, 1626
ArsI	GACNNNNNNTTYG	2 cut(s)	1175, 1207
AsiGI	ACCGGT	1 cut(s)	1472
Asp700I	GAANNNNTTC	1 cut(s)	1656
AspLEI	GCGC	3 cut(s)	71, 421, 1293
AspS9I	GGNCC	6 cut(s)	30, 295, 713, 1191, 1345, 1700
AsuHPI	GGTGA	3 cut(s)	1067, 1649, 1724
AvaI	CYCGRG	2 cut(s)	398, 1479
AvaII	GGWCC	4 cut(s)	30, 713, 1191, 1345
BaeGI	GKGCMC	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	1039
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	2 cut(s)	737, 1130
Bbv12I	GWGCWC	6 cut(s)	26, 570, 1039, 1171, 1480, 1686
BbvI	GCAGC	4 cut(s)	155, 169, 186, 893
BccI	CCATC	3 cut(s)	373, 703, 1063
BceAI	ACGGC	2 cut(s)	305, 620
BcgI	CGANNNNNNTGC	4 cut(s)	163, 197, 379, 413
BciT130I	CCWGG	3 cut(s)	28, 317, 1611
BciVI	GTATCC	2 cut(s)	106, 1066
BcoDI	GTCTC	1 cut(s)	296
BfaI	CTAG	2 cut(s)	120, 752
BfmI	CTRYAG	1 cut(s)	1239
BfoI	RGCGCY	3 cut(s)	72, 422, 1294
BfrI	CTTAAG	1 cut(s)	413
BfuI	GTATCC	2 cut(s)	106, 1066
BglII	AGATCT	1 cut(s)	1252
BisI	GCNGC	9 cut(s)	54, 57, 144, 158, 161, 164, 175, 422, 882
BlsI	GCNGC	9 cut(s)	55, 58, 145, 159, 162, 165, 176, 423, 883
Bme1390I	CCNGG	3 cut(s)	28, 317, 1611
Bme18I	GGWCC	4 cut(s)	30, 713, 1191, 1345
BmeT110I	CYCGRG	2 cut(s)	398, 1479
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	6 cut(s)	30, 295, 713, 1191, 1345, 1700
BmiI	GGNNCC	8 cut(s)	420, 475, 481, 714, 715, 1009, 1533, 1701
BmrFI	CCNGG	3 cut(s)	28, 317, 1611
BmsI	GCATC	5 cut(s)	233, 778, 1054, 1420, 1594
BoxI	GACNNNNGTC	1 cut(s)	283
BpiI	GAAGAC	2 cut(s)	737, 1130
BpmI	CTGGAG	2 cut(s)	987, 1593
BsaHI	GRCGYC	3 cut(s)	419, 975, 1209
BsaJI	CCNNGG	1 cut(s)	507
BsaWI	WCCGGW	4 cut(s)	98, 470, 476, 1472
BsaXI	ACNNNNNCTCC	6 cut(s)	813, 843, 960, 990, 1158, 1188
Bsc4I	CCNNNNNNNGG	6 cut(s)	159, 304, 386, 1031, 1616, 1709
Bse118I	RCCGGY	2 cut(s)	59, 1472
Bse1I	ACTGG	3 cut(s)	724, 1172, 1194
Bse3DI	GCAATG	5 cut(s)	703, 780, 986, 1464, 1527
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	3 cut(s)	28, 317, 1611
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	4 cut(s)	365, 1045, 1223, 1609
BseLI	CCNNNNNNNGG	6 cut(s)	159, 304, 386, 1031, 1616, 1709
BseMI	GCAATG	5 cut(s)	703, 780, 986, 1464, 1527
BseMII	CTCAG	5 cut(s)	28, 855, 899, 927, 1427
BseNI	ACTGG	3 cut(s)	724, 1172, 1194
BseRI	GAGGAG	8 cut(s)	201, 204, 207, 210, 213, 216, 365, 1632
BseSI	GKGCMC	1 cut(s)	335
BseXI	GCAGC	4 cut(s)	155, 169, 186, 893
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	2 cut(s)	156, 193
Bsh1285I	CGRYCG	1 cut(s)	281
BshFI	GGCC	8 cut(s)	297, 320, 364, 486, 546, 954, 1269, 1702
BshNI	GGYRCC	1 cut(s)	418
BshTI	ACCGGT	1 cut(s)	1472
BsiEI	CGRYCG	1 cut(s)	281
BsiHKAI	GWGCWC	6 cut(s)	26, 570, 1039, 1171, 1480, 1686
BsiHKCI	CYCGRG	2 cut(s)	398, 1479
BsiSI	CCGG	6 cut(s)	60, 99, 471, 477, 483, 1473
BslFI	GGGAC	2 cut(s)	222, 699
BslI	CCNNNNNNNGG	6 cut(s)	159, 304, 386, 1031, 1616, 1709
BsmAI	GTCTC	1 cut(s)	296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	2 cut(s)	222, 699
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	8 cut(s)	297, 320, 364, 486, 546, 954, 1269, 1702
BsoBI	CYCGRG	2 cut(s)	398, 1479
Bsp1286I	GDGCHC	7 cut(s)	26, 335, 570, 1039, 1171, 1480, 1686
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	1252, 1330
BspANI	GGCC	8 cut(s)	297, 320, 364, 486, 546, 954, 1269, 1702
BspCNI	CTCAG	5 cut(s)	27, 856, 898, 928, 1428
BspEI	TCCGGA	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	1663
BspLI	GGNNCC	8 cut(s)	420, 475, 481, 714, 715, 1009, 1533, 1701
BspPI	GGATC	1 cut(s)	1338
BspQI	GCTCTTC	1 cut(s)	686
BspT107I	GGYRCC	1 cut(s)	418
BspTI	CTTAAG	1 cut(s)	413
BsrDI	GCAATG	5 cut(s)	703, 780, 986, 1464, 1527
BsrFI	RCCGGY	2 cut(s)	59, 1472
BsrI	ACTGG	3 cut(s)	724, 1172, 1194
BssAI	RCCGGY	2 cut(s)	59, 1472
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	2 cut(s)	1252, 1330
BssNAI	GTATAC	2 cut(s)	1064, 1562
BssNI	GRCGYC	3 cut(s)	419, 975, 1209
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	1 cut(s)	507
Bst1107I	GTATAC	2 cut(s)	1064, 1562
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	3 cut(s)	28, 317, 1611
Bst4CI	ACNGT	3 cut(s)	236, 662, 1012
Bst6I	CTCTTC	2 cut(s)	97, 686
BstACI	GRCGYC	3 cut(s)	419, 975, 1209
BstAFI	CTTAAG	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	61, 1704
BstDEI	CTNAG	6 cut(s)	14, 864, 885, 936, 1436, 1631
BstENI	CCTNNNNNAGG	3 cut(s)	384, 1029, 1707
BstF5I	GGATG	4 cut(s)	365, 1045, 1223, 1609
BstH2I	RGCGCY	3 cut(s)	72, 422, 1294
BstHHI	GCGC	3 cut(s)	71, 421, 1293
BstKTI	GATC	2 cut(s)	1255, 1333
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	2 cut(s)	1252, 1330
BstMCI	CGRYCG	1 cut(s)	281
BstMWI	GCNNNNNNNGC	7 cut(s)	116, 143, 163, 339, 370, 418, 1454
BstNI	CCWGG	3 cut(s)	28, 317, 1611
BstNSI	RCATGY	1 cut(s)	1568
BstPAI	GACNNNNGTC	1 cut(s)	283
BstSCI	CCNGG	3 cut(s)	26, 315, 1609
BstSFI	CTRYAG	1 cut(s)	1239
BstSLI	GKGCMC	1 cut(s)	335
BstV1I	GCAGC	4 cut(s)	155, 169, 186, 893
BstV2I	GAAGAC	2 cut(s)	737, 1130
BstX2I	RGATCY	1 cut(s)	1252
BstYI	RGATCY	1 cut(s)	1252
BstZ17I	GTATAC	2 cut(s)	1064, 1562
BsuI	GTATCC	2 cut(s)	106, 1066
BsuRI	GGCC	8 cut(s)	297, 320, 364, 486, 546, 954, 1269, 1702
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	365, 1045, 1223, 1609
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	6 cut(s)	114, 667, 717, 1201, 1433, 1605
Cac8I	GCNNGC	2 cut(s)	61, 1704
CciI	TCATGA	1 cut(s)	1663
CfoI	GCGC	3 cut(s)	71, 421, 1293
Cfr10I	RCCGGY	2 cut(s)	59, 1472
Cfr13I	GGNCC	6 cut(s)	30, 295, 713, 1191, 1345, 1700
CseI	GACGC	2 cut(s)	964, 1217
CsiI	ACCWGGT	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	208, 1381
CspAI	ACCGGT	1 cut(s)	1472
CviAII	CATG	6 cut(s)	431, 1186, 1399, 1565, 1664, 1687
CviQI	GTAC	2 cut(s)	208, 1381
DdeI	CTNAG	6 cut(s)	14, 864, 885, 936, 1436, 1631
DinI	GGCGCC	1 cut(s)	420
DpnI	GATC	2 cut(s)	1254, 1332
DpnII	GATC	2 cut(s)	1252, 1330
DraI	TTTAAA	1 cut(s)	1323
EaeI	YGGCCR	3 cut(s)	484, 544, 952
Eam1104I	CTCTTC	2 cut(s)	97, 686
EarI	CTCTTC	2 cut(s)	97, 686
EciI	GGCGGA	1 cut(s)	239
Ecl136II	GAGCTC	1 cut(s)	1037
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	1039
Eco32I	GATATC	1 cut(s)	1084
Eco47I	GGWCC	4 cut(s)	30, 713, 1191, 1345
Eco53kI	GAGCTC	1 cut(s)	1037
Eco57I	CTGAAG	1 cut(s)	1728
Eco88I	CYCGRG	2 cut(s)	398, 1479
EcoICRI	GAGCTC	1 cut(s)	1037
EcoNI	CCTNNNNNAGG	3 cut(s)	384, 1029, 1707
EcoO109I	RGGNCCY	4 cut(s)	30, 713, 1345, 1700
EcoRII	CCWGG	3 cut(s)	26, 315, 1609
EcoRV	GATATC	1 cut(s)	1084
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	1039
EgeI	GGCGCC	1 cut(s)	420
EheI	GGCGCC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	507
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	6 cut(s)	434, 1189, 1402, 1568, 1667, 1690
FaqI	GGGAC	2 cut(s)	222, 699
FatI	CATG	6 cut(s)	430, 1185, 1398, 1564, 1663, 1686
FauNDI	CATATG	1 cut(s)	1094
FblI	GTMKAC	3 cut(s)	900, 1063, 1561
Fnu4HI	GCNGC	9 cut(s)	54, 57, 144, 158, 161, 164, 175, 422, 882
FokI	GGATG	4 cut(s)	352, 1032, 1210, 1616
FriOI	GRGCYC	1 cut(s)	1039
Fsp4HI	GCNGC	9 cut(s)	54, 57, 144, 158, 161, 164, 175, 422, 882
FspBI	CTAG	2 cut(s)	120, 752
GlaI	GCGC	3 cut(s)	70, 420, 1292
GluI	GCNGC	9 cut(s)	54, 57, 144, 158, 161, 164, 175, 422, 882
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	987, 1593
HaeII	RGCGCY	3 cut(s)	72, 422, 1294
HaeIII	GGCC	8 cut(s)	297, 320, 364, 486, 546, 954, 1269, 1702
HapII	CCGG	6 cut(s)	60, 99, 471, 477, 483, 1473
HgaI	GACGC	2 cut(s)	964, 1217
HhaI	GCGC	3 cut(s)	71, 421, 1293
Hin1I	GRCGYC	3 cut(s)	419, 975, 1209
Hin1II	CATG	6 cut(s)	434, 1189, 1402, 1568, 1667, 1690
Hin6I	GCGC	3 cut(s)	69, 419, 1291
HinP1I	GCGC	3 cut(s)	69, 419, 1291
HinfI	GANTC	9 cut(s)	87, 325, 467, 502, 638, 674, 833, 1148, 1235
HpaII	CCGG	6 cut(s)	60, 99, 471, 477, 483, 1473
HphI	GGTGA	3 cut(s)	1067, 1649, 1724
Hpy166II	GTNNAC	6 cut(s)	232, 313, 653, 901, 1064, 1562
Hpy188I	TCNGA	6 cut(s)	17, 185, 466, 888, 1041, 1135
Hpy8I	GTNNAC	6 cut(s)	232, 313, 653, 901, 1064, 1562
HpyAV	CCTTC	7 cut(s)	361, 618, 925, 998, 1447, 1634, 1703
HpyCH4III	ACNGT	3 cut(s)	236, 662, 1012
HpyCH4IV	ACGT	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	7 cut(s)	116, 143, 163, 339, 370, 418, 1454
HpyF3I	CTNAG	6 cut(s)	14, 864, 885, 936, 1436, 1631
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	3 cut(s)	419, 975, 1209
Hsp92II	CATG	6 cut(s)	434, 1189, 1402, 1568, 1667, 1690
HspAI	GCGC	3 cut(s)	69, 419, 1291
KasI	GGCGCC	1 cut(s)	418
KflI	GGGWCCC	1 cut(s)	713
Kpn2I	TCCGGA	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	1252, 1330
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	6 cut(s)	378, 1034, 1166, 1612, 1619, 1735
Lsp1109I	GCAGC	4 cut(s)	155, 169, 186, 893
LweI	GCATC	5 cut(s)	233, 778, 1054, 1420, 1594
MabI	ACCWGGT	1 cut(s)	26
MaeI	CTAG	2 cut(s)	120, 752
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	112, 1216
MalI	GATC	2 cut(s)	1254, 1332
MboI	GATC	2 cut(s)	1252, 1330
MboII	GAAGA	9 cut(s)	114, 603, 703, 742, 836, 1135, 1143, 1595, 1652
MfeI	CAATTG	1 cut(s)	337
MflI	RGATCY	1 cut(s)	1252
MhlI	GDGCHC	7 cut(s)	26, 335, 570, 1039, 1171, 1480, 1686
MluCI	AATT	7 cut(s)	337, 454, 460, 1280, 1412, 1626, 1655
Mly113I	GGCGCC	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	496
MmeI	TCCRAC	6 cut(s)	163, 666, 799, 981, 1003, 1212
MroI	TCCGGA	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	59
MroXI	GAANNNNTTC	1 cut(s)	1656
MseI	TTAA	5 cut(s)	414, 800, 944, 1017, 1322
MslI	CAYNNNNRTG	1 cut(s)	1050
MspA1I	CMGCKG	2 cut(s)	160, 283
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	6 cut(s)	60, 99, 471, 477, 483, 1473
MspR9I	CCNGG	3 cut(s)	28, 317, 1611
MunI	CAATTG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	3 cut(s)	28, 317, 1611
MwoI	GCNNNNNNNGC	7 cut(s)	116, 143, 163, 339, 370, 418, 1454
NaeI	GCCGGC	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	419
NdeI	CATATG	1 cut(s)	1094
NdeII	GATC	2 cut(s)	1252, 1330
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	6 cut(s)	434, 1189, 1402, 1568, 1667, 1690
NlaIV	GGNNCC	8 cut(s)	420, 475, 481, 714, 715, 1009, 1533, 1701
NmeAIII	GCCGAG	2 cut(s)	323, 980
NmuCI	GTSAC	2 cut(s)	112, 1216
NspI	RCATGY	1 cut(s)	1568
PaeR7I	CTCGAG	2 cut(s)	398, 1479
PagI	TCATGA	1 cut(s)	1663
PciSI	GCTCTTC	1 cut(s)	686
PctI	GAATGC	1 cut(s)	607
PdiI	GCCGGC	1 cut(s)	61
PdmI	GAANNNNTTC	1 cut(s)	1656
PfeI	GAWTC	8 cut(s)	87, 325, 467, 638, 674, 833, 1148, 1235
PflFI	GACNNNGTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	1609
PinAI	ACCGGT	1 cut(s)	1472
PkrI	GCNGC	9 cut(s)	55, 58, 145, 159, 162, 165, 176, 423, 883
PleI	GAGTC	1 cut(s)	496
PluTI	GGCGCC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	496
PpuMI	RGGWCCY	3 cut(s)	30, 713, 1345
PshAI	GACNNNNGTC	1 cut(s)	283
PsiI	TTATAA	1 cut(s)	585
Psp124BI	GAGCTC	1 cut(s)	1039
Psp5II	RGGWCCY	3 cut(s)	30, 713, 1345
Psp6I	CCWGG	3 cut(s)	26, 315, 1609
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	26, 315, 1609
PspN4I	GGNNCC	8 cut(s)	420, 475, 481, 714, 715, 1009, 1533, 1701
PspPI	GGNCC	6 cut(s)	30, 295, 713, 1191, 1345, 1700
PspPPI	RGGWCCY	3 cut(s)	30, 713, 1345
PspXI	VCTCGAGB	1 cut(s)	1479
PsrI	GAACNNNNNNTAC	2 cut(s)	1005, 1037
PsuI	RGATCY	1 cut(s)	1252
PsyI	GACNNNGTC	1 cut(s)	536
RsaI	GTAC	2 cut(s)	209, 1382
RsaNI	GTAC	2 cut(s)	208, 1381
RseI	CAYNNNNRTG	1 cut(s)	1050
SacI	GAGCTC	1 cut(s)	1039
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	5 cut(s)	414, 800, 944, 1017, 1322
SatI	GCNGC	9 cut(s)	54, 57, 144, 158, 161, 164, 175, 422, 882
Sau3AI	GATC	2 cut(s)	1252, 1330
Sau96I	GGNCC	6 cut(s)	30, 295, 713, 1191, 1345, 1700
SchI	GAGTC	1 cut(s)	496
ScrFI	CCNGG	3 cut(s)	28, 317, 1611
SduI	GDGCHC	7 cut(s)	26, 335, 570, 1039, 1171, 1480, 1686
SexAI	ACCWGGT	1 cut(s)	26
SfaNI	GCATC	5 cut(s)	233, 778, 1054, 1420, 1594
SfcI	CTRYAG	1 cut(s)	1239
SfoI	GGCGCC	1 cut(s)	420
Sfr274I	CTCGAG	2 cut(s)	398, 1479
SgrAI	CRCCGGYG	1 cut(s)	1472
SinI	GGWCC	4 cut(s)	30, 713, 1191, 1345
SlaI	CTCGAG	2 cut(s)	398, 1479
SmiMI	CAYNNNNRTG	1 cut(s)	1050
SmlI	CTYRAG	3 cut(s)	398, 413, 1479
SmoI	CTYRAG	3 cut(s)	398, 413, 1479
Sse9I	AATT	7 cut(s)	337, 454, 460, 1280, 1412, 1626, 1655
SspDI	GGCGCC	1 cut(s)	418
SspI	AATATT	3 cut(s)	840, 949, 1507
SspMI	CTAG	2 cut(s)	120, 752
SstI	GAGCTC	1 cut(s)	1039
StyD4I	CCNGG	3 cut(s)	26, 315, 1609
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	3 cut(s)	236, 662, 1012
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	7 cut(s)	248, 272, 287, 399, 1480, 1527, 1676
TasI	AATT	7 cut(s)	337, 454, 460, 1280, 1412, 1626, 1655
TatI	WGTACW	1 cut(s)	1380
TauI	GCSGC	5 cut(s)	56, 59, 163, 166, 424
TfiI	GAWTC	8 cut(s)	87, 325, 467, 638, 674, 833, 1148, 1235
Tru1I	TTAA	5 cut(s)	414, 800, 944, 1017, 1322
Tru9I	TTAA	5 cut(s)	414, 800, 944, 1017, 1322
TscAI	CASTG	6 cut(s)	121, 667, 724, 1201, 1440, 1605
TseFI	GTSAC	2 cut(s)	112, 1216
TseI	GCWGC	4 cut(s)	143, 157, 174, 881
Tsp45I	GTSAC	2 cut(s)	112, 1216
TspDTI	ATGAA	6 cut(s)	924, 1081, 1415, 1596, 1652, 1680
TspGWI	ACGGA	2 cut(s)	82, 872
TspRI	CASTG	6 cut(s)	121, 667, 724, 1201, 1440, 1605
Tth111I	GACNNNGTC	1 cut(s)	536
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	4 cut(s)	30, 713, 1191, 1345
XagI	CCTNNNNNAGG	3 cut(s)	384, 1029, 1707
XapI	RAATTY	2 cut(s)	1280, 1626
XceI	RCATGY	1 cut(s)	1568
XhoI	CTCGAG	2 cut(s)	398, 1479
XmiI	GTMKAC	3 cut(s)	900, 1063, 1561
XmnI	GAANNNNTTC	1 cut(s)	1656
XspI	CTAG	2 cut(s)	120, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.