Rorug07G0185800

ATP-dependent Clp protease ATP-binding subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003035
Physical Location & Seq
Reverse (-)
15611835 .. 15612285
451 bp
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UTR
Exon/CDS
Intron
Rorug07G0185800.1

Sequence Viewer

Length: 363 bp
ATGAAGACAGAATTGAGCAAGTACTTGGATGAAGCAAGGCTAGAAAGAAAGCAAGAGTTGGATGTATTTTCTTGGTGGAAAATGGAGCAAATCCGATATCCTATTATTTTTCATCTAGCTCGTGATGTGCTCACAATTCCCATTTCTACCGTTGCATCTGAATTGGCCTTTAGCATTGGCGGGAGAGTTTTAGATCAATACCGCAGCTCACTGTTGCCTGACACAGTTCAAGCTCTGCTTTGTACTCGAGATTGGATTTTTGGTAACAAAGAAAAAGAGCGTGCTGAATTGGATGATCTTATTGAAGACGTATTTGATTTGACATTGCAAGATAGATCTAGAGAAGGAGAAAGCCGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 map04112
Pfam Domains
Protein Families
AAA_2 ClpB_D2-small

Protein Analysis

120

Amino Acids

14.12

Weight (kDa)

4.84

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 4 - 86 2.5e-30 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 180, 202, 355
AfaI GTAC 2 cut(s) 23, 244
AgsI TTSAA 2 cut(s) 230, 305
AluBI AGCT 3 cut(s) 119, 207, 233
AluI AGCT 3 cut(s) 119, 207, 233
Alw21I GWGCWC 1 cut(s) 132
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 204
AvaI CYCGRG 1 cut(s) 246
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 11, 312
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 216
BfaI CTAG 3 cut(s) 41, 116, 339
BglII AGATCT 1 cut(s) 335
BisI GCNGC 2 cut(s) 205, 355
BlsI GCNGC 2 cut(s) 206, 356
BmcAI AGTACT 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 246
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 2 cut(s) 11, 312
Bse3DI GCAATG 1 cut(s) 323
BseGI GGATG 3 cut(s) 34, 67, 298
BseMI GCAATG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 246
BsnI GGCC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 3 cut(s) 193, 295, 335
BspACI CCGC 3 cut(s) 180, 202, 355
BspANI GGCC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 323
BssMI GATC 3 cut(s) 193, 295, 335
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 151, 213, 226
BstC8I GCNNGC 1 cut(s) 282
BstF5I GGATG 3 cut(s) 34, 67, 298
BstKTI GATC 3 cut(s) 196, 298, 338
BstMBI GATC 3 cut(s) 193, 295, 335
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 2 cut(s) 11, 312
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 3 cut(s) 34, 67, 298
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 282
Csp6I GTAC 2 cut(s) 22, 243
CviJI RGCY 6 cut(s) 40, 119, 167, 207, 233, 354
CviKI_1 RGCY 6 cut(s) 40, 119, 167, 207, 233, 354
CviQI GTAC 2 cut(s) 22, 243
DpnI GATC 3 cut(s) 195, 297, 337
DpnII GATC 3 cut(s) 193, 295, 335
Eco32I GATATC 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 246
EcoRV GATATC 1 cut(s) 98
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FauI CCCGC 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 205, 355
FokI GGATG 3 cut(s) 41, 74, 305
Fsp4HI GCNGC 2 cut(s) 205, 355
FspBI CTAG 3 cut(s) 41, 116, 339
GluI GCNGC 2 cut(s) 205, 355
HaeIII GGCC 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 95, 160
Hpy188III TCNNGA 3 cut(s) 122, 248, 339
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 151, 213, 226
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 155, 328
HpySE526I ACGT 1 cut(s) 309
Kzo9I GATC 3 cut(s) 193, 295, 335
LmnI GCTCC 1 cut(s) 85
LpnPI CCDG 1 cut(s) 231
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 164
MaeI CTAG 3 cut(s) 41, 116, 339
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 263
MalI GATC 3 cut(s) 195, 297, 337
MboI GATC 3 cut(s) 193, 295, 335
MboII GAAGA 2 cut(s) 16, 317
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 5 cut(s) 11, 135, 161, 287, 358
MmeI TCCRAC 1 cut(s) 39
MseI TTAA 1 cut(s) 361
NdeII GATC 3 cut(s) 193, 295, 335
PaeR7I CTCGAG 1 cut(s) 246
PkrI GCNGC 2 cut(s) 206, 356
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 2 cut(s) 23, 244
RsaNI GTAC 2 cut(s) 22, 243
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 2 cut(s) 205, 355
Sau3AI GATC 3 cut(s) 193, 295, 335
ScaI AGTACT 1 cut(s) 23
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 121, 209, 235, 312
SfaNI GCATC 1 cut(s) 164
Sfr274I CTCGAG 1 cut(s) 246
SlaI CTCGAG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 5 cut(s) 11, 135, 161, 287, 358
SsiI CCGC 3 cut(s) 180, 202, 355
SspMI CTAG 3 cut(s) 41, 116, 339
TaaI ACNGT 3 cut(s) 151, 213, 226
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 247
TasI AATT 5 cut(s) 11, 135, 161, 287, 358
TatI WGTACW 2 cut(s) 21, 242
TauI GCSGC 1 cut(s) 357
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 1 cut(s) 216
TseI GCWGC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 17, 45, 101
TspRI CASTG 1 cut(s) 216
XbaI TCTAGA 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 3 cut(s) 41, 116, 339
ZrmI AGTACT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.