FvH4_5g27970

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
19194414 .. 19195868
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27970.t1

Sequence Viewer

Length: 726 bp
ATGAACGTGGTGGCAAGCCAAGCAGCCAACGGCGGTCGGACCGTTTTGATAACGGGCGTGAGCAAAGGGCTCGGCCGAGCACTCGCCGTCGAGCTGGCCAAGCGCGGCCACACCGTAATCGGCTGCTCCCGTTCGCAGGATAAGCTCACCTCCCTCCAATCCGAACTCTCCTCCGACAACCACCTCTTCCTCGCCGCCGACGTCAGCTCGAATAGCAGCATCCAGGAGCTGGCTCGGATCGTCATGGAGAAGAAGGGCGTCCCCGATATCATCGTCAACAACGCCGGCGTCATCAACAGCAACAACAAGCTCTGGGAGGTTCCGGCCGACGAGTTCGACGGCGTCATCGACACCAATGTCAAAGGCGTCGCTAACGTCTTGCGCCACTTCATCCCTCTCATGCTCAAGAGGGATCCCGCTCCGGCTACTGGAATCATCGTCAACATGTCTTCCGGCTGGGGCAGATCCGGTGCCGCACACGTGGCGCCTTACTGTGCCTCCAAATGGGCCGTGGAGGGCCTGACCCGCTCCGTGGCCAAGGAGTTGCCCAAGGACATGGCCATTGTGGCTCTCAACCCCGGGGTCATCCACACTGATATGCTTGTGTCCTGCTTCGGCCCCCATAATATGGATAGTTACCCGGAGCCTCGGGTATGGGCTGTCAAGGCTGCTACAATGATATTGCATCTTACCCCAGCTGACAATGGTGCTTCTCTCTCTGTCTGA

Protein Analysis

242

Amino Acids

25.5

Weight (kDa)

7.78

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 14 - 202 5.8e-46 short chain dehydrogenase
KR PF08659 14 - 179 6.1e-09 KR domain
Epimerase PF01370 15 - 182 1.1e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 19 - 205 1.9e-33 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 356
AatII GACGTC 1 cut(s) 204
AccB1I GGYRCC 2 cut(s) 470, 484
AccB7I CCANNNNNTGG 2 cut(s) 229, 628
AccBSI CCGCTC 2 cut(s) 419, 528
AccII CGCG 1 cut(s) 105
AciI CCGC 6 cut(s) 33, 105, 195, 417, 474, 526
AclWI GGATC 4 cut(s) 245, 407, 420, 459
AcoI YGGCCR 6 cut(s) 73, 96, 106, 324, 534, 558
AcvI CACGTG 1 cut(s) 481
AcyI GRCGYC 6 cut(s) 201, 258, 288, 342, 366, 485
AfiI CCNNNNNNNGG 6 cut(s) 136, 229, 428, 504, 532, 628
AflIII ACRYGT 2 cut(s) 444, 478
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 6 cut(s) 94, 145, 207, 229, 310, 698
AluI AGCT 6 cut(s) 94, 145, 207, 229, 310, 698
Alw21I GWGCWC 1 cut(s) 82
AlwI GGATC 4 cut(s) 245, 407, 420, 459
AlwNI CAGNNNCTG 1 cut(s) 229
Ama87I CYCGRG 2 cut(s) 578, 648
AoxI GGCC 9 cut(s) 73, 96, 106, 324, 507, 517, 534, 558, 616
ApeKI GCWGC 4 cut(s) 23, 123, 216, 668
AspLEI GCGC 3 cut(s) 105, 384, 487
AspS9I GGNCC 4 cut(s) 39, 507, 517, 617
AsuC2I CCSGG 3 cut(s) 579, 580, 641
AsuHPI GGTGA 1 cut(s) 139
AvaI CYCGRG 2 cut(s) 578, 648
AvaII GGWCC 1 cut(s) 39
BalI TGGCCA 3 cut(s) 98, 536, 560
BamHI GGATCC 1 cut(s) 412
BanI GGYRCC 2 cut(s) 470, 484
BanII GRGCYC 1 cut(s) 72
BbrPI CACGTG 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 4 cut(s) 35, 110, 228, 655
BceAI ACGGC 4 cut(s) 46, 71, 355, 494
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 3 cut(s) 579, 580, 641
BfoI RGCGCY 1 cut(s) 488
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 7 cut(s) 24, 106, 124, 195, 217, 474, 669
BlsI GCNGC 7 cut(s) 25, 107, 125, 196, 218, 475, 670
Bme1390I CCNGG 4 cut(s) 224, 579, 580, 641
Bme18I GGWCC 1 cut(s) 39
BmeT110I CYCGRG 2 cut(s) 578, 648
BmgT120I GGNCC 4 cut(s) 39, 507, 517, 617
BmiI GGNNCC 6 cut(s) 321, 414, 472, 486, 619, 645
BmrFI CCNGG 4 cut(s) 224, 579, 580, 641
BmsI GCATC 2 cut(s) 228, 694
BpiI GAAGAC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 389
BpuMI CCSGG 3 cut(s) 579, 580, 641
BsaAI YACGTR 1 cut(s) 481
BsaHI GRCGYC 6 cut(s) 201, 258, 288, 342, 366, 485
BsaJI CCNNGG 8 cut(s) 510, 531, 537, 549, 577, 578, 579, 647
BsaWI WCCGGW 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 482, 512
Bsc4I CCNNNNNNNGG 6 cut(s) 136, 229, 428, 504, 532, 628
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 8 cut(s) 510, 531, 537, 549, 577, 578, 579, 647
BseGI GGATG 3 cut(s) 219, 390, 585
BseLI CCNNNNNNNGG 6 cut(s) 136, 229, 428, 504, 532, 628
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 1 cut(s) 160
BseX3I CGGCCG 2 cut(s) 73, 324
BseXI GCAGC 4 cut(s) 35, 110, 228, 655
BseYI CCCAGC 2 cut(s) 456, 694
Bsh1236I CGCG 1 cut(s) 105
Bsh1285I CGRYCG 3 cut(s) 37, 76, 327
BshFI GGCC 9 cut(s) 75, 98, 108, 326, 509, 519, 536, 560, 618
BshNI GGYRCC 2 cut(s) 470, 484
BsiEI CGRYCG 3 cut(s) 37, 76, 327
BsiHKAI GWGCWC 1 cut(s) 82
BsiHKCI CYCGRG 2 cut(s) 578, 648
BsiSI CCGG 7 cut(s) 285, 323, 422, 453, 468, 579, 641
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 6 cut(s) 136, 229, 428, 504, 532, 628
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 9 cut(s) 75, 98, 108, 326, 509, 519, 536, 560, 618
BsoBI CYCGRG 2 cut(s) 578, 648
Bsp1286I GDGCHC 2 cut(s) 72, 82
Bsp143I GATC 3 cut(s) 237, 412, 464
BspACI CCGC 6 cut(s) 33, 105, 195, 417, 474, 526
BspANI GGCC 9 cut(s) 75, 98, 108, 326, 509, 519, 536, 560, 618
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 6 cut(s) 321, 414, 472, 486, 619, 645
BspPI GGATC 4 cut(s) 245, 407, 420, 459
BspT107I GGYRCC 2 cut(s) 470, 484
BsrBI CCGCTC 2 cut(s) 419, 528
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 8 cut(s) 510, 531, 537, 549, 577, 578, 579, 647
BssMI GATC 3 cut(s) 237, 412, 464
BssNI GRCGYC 6 cut(s) 201, 258, 288, 342, 366, 485
BssT1I CCWWGG 2 cut(s) 537, 549
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 43, 115, 494
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 6 cut(s) 201, 258, 288, 342, 366, 485
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 4 cut(s) 16, 96, 231, 286
BstDSI CCRYGG 2 cut(s) 510, 531
BstF5I GGATG 3 cut(s) 219, 390, 585
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 3 cut(s) 105, 384, 487
BstKTI GATC 3 cut(s) 240, 415, 467
BstMBI GATC 3 cut(s) 237, 412, 464
BstMCI CGRYCG 3 cut(s) 37, 76, 327
BstMWI GCNNNNNNNGC 8 cut(s) 20, 100, 142, 213, 482, 525, 566, 665
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 448
BstSCI CCNGG 4 cut(s) 222, 577, 578, 639
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 35, 110, 228, 655
BstV2I GAAGAC 1 cut(s) 441
BstX2I RGATCY 2 cut(s) 412, 464
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 2 cut(s) 412, 464
BstZI CGGCCG 2 cut(s) 73, 324
BsuRI GGCC 9 cut(s) 75, 98, 108, 326, 509, 519, 536, 560, 618
BtgI CCRYGG 2 cut(s) 510, 531
BtsCI GGATG 3 cut(s) 219, 390, 585
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 4 cut(s) 16, 96, 231, 286
CaiI CAGNNNCTG 1 cut(s) 229
CfoI GCGC 3 cut(s) 105, 384, 487
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 4 cut(s) 39, 507, 517, 617
Cfr9I CCCGGG 1 cut(s) 578
CpoI CGGWCCG 1 cut(s) 39
CseI GACGC 4 cut(s) 247, 277, 331, 355
CspI CGGWCCG 1 cut(s) 39
CviAII CATG 4 cut(s) 244, 400, 445, 556
DinI GGCGCC 1 cut(s) 486
DpnI GATC 3 cut(s) 239, 414, 466
DpnII GATC 3 cut(s) 237, 412, 464
DrdI GACNNNNNNGTC 1 cut(s) 356
DseDI GACNNNNNNGTC 1 cut(s) 356
EaeI YGGCCR 6 cut(s) 73, 96, 106, 324, 534, 558
EagI CGGCCG 2 cut(s) 73, 324
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
EclXI CGGCCG 2 cut(s) 73, 324
Eco130I CCWWGG 2 cut(s) 537, 549
Eco24I GRGCYC 1 cut(s) 72
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 39
Eco52I CGGCCG 2 cut(s) 73, 324
Eco72I CACGTG 1 cut(s) 481
Eco88I CYCGRG 2 cut(s) 578, 648
EcoO109I RGGNCCY 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 537, 549
EcoT38I GRGCYC 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 486
EheI GGCGCC 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 537, 549
FaeI CATG 4 cut(s) 247, 403, 448, 559
FaiI YATR 8 cut(s) 245, 401, 446, 557, 599, 624, 629, 655
FaqI GGGAC 1 cut(s) 245
FatI CATG 4 cut(s) 243, 399, 444, 555
FauI CCCGC 2 cut(s) 424, 533
Fnu4HI GCNGC 7 cut(s) 24, 106, 124, 195, 217, 474, 669
FokI GGATG 3 cut(s) 206, 377, 572
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 7 cut(s) 24, 106, 124, 195, 217, 474, 669
GlaI GCGC 3 cut(s) 104, 383, 486
GluI GCNGC 7 cut(s) 24, 106, 124, 195, 217, 474, 669
GsaI CCCAGC 2 cut(s) 460, 698
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 9 cut(s) 75, 98, 108, 326, 509, 519, 536, 560, 618
HapII CCGG 7 cut(s) 285, 323, 422, 453, 468, 579, 641
HgaI GACGC 4 cut(s) 247, 277, 331, 355
HhaI GCGC 3 cut(s) 105, 384, 487
Hin1I GRCGYC 6 cut(s) 201, 258, 288, 342, 366, 485
Hin1II CATG 4 cut(s) 247, 403, 448, 559
Hin6I GCGC 3 cut(s) 103, 382, 485
HinP1I GCGC 3 cut(s) 103, 382, 485
HincII GTYRAC 2 cut(s) 277, 442
HindII GTYRAC 2 cut(s) 277, 442
HinfI GANTC 1 cut(s) 432
HpaII CCGG 7 cut(s) 285, 323, 422, 453, 468, 579, 641
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 2 cut(s) 277, 442
Hpy188I TCNGA 5 cut(s) 39, 163, 175, 237, 725
Hpy188III TCNNGA 1 cut(s) 406
Hpy8I GTNNAC 2 cut(s) 277, 442
Hpy99I CGWCG 5 cut(s) 92, 203, 332, 341, 371
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 3 cut(s) 43, 115, 494
HpyCH4IV ACGT 4 cut(s) 6, 201, 375, 480
HpyCH4V TGCA 1 cut(s) 685
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 100, 142, 213, 482, 525, 566, 665
HpySE526I ACGT 4 cut(s) 6, 201, 375, 480
Hsp92I GRCGYC 6 cut(s) 201, 258, 288, 342, 366, 485
Hsp92II CATG 4 cut(s) 247, 403, 448, 559
HspAI GCGC 3 cut(s) 103, 382, 485
KasI GGCGCC 1 cut(s) 484
KroI GCCGGC 1 cut(s) 284
KroNI GCCGGC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 237, 412, 464
LmnI GCTCC 5 cut(s) 131, 226, 424, 533, 643
Lsp1109I GCAGC 4 cut(s) 35, 110, 228, 655
LweI GCATC 2 cut(s) 228, 694
MaeII ACGT 4 cut(s) 6, 201, 375, 480
MaeIII GTNAC 1 cut(s) 635
MalI GATC 3 cut(s) 239, 414, 466
MbiI CCGCTC 2 cut(s) 419, 528
MboI GATC 3 cut(s) 237, 412, 464
MboII GAAGA 3 cut(s) 178, 262, 441
MflI RGATCY 2 cut(s) 412, 464
MhlI GDGCHC 2 cut(s) 72, 82
MlsI TGGCCA 3 cut(s) 98, 536, 560
MluNI TGGCCA 3 cut(s) 98, 536, 560
Mly113I GGCGCC 1 cut(s) 485
MmeI TCCRAC 2 cut(s) 17, 198
Mox20I TGGCCA 3 cut(s) 98, 536, 560
MreI CGCCGGCG 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 284
MscI TGGCCA 3 cut(s) 98, 536, 560
MslI CAYNNNNRTG 1 cut(s) 596
Msp20I TGGCCA 3 cut(s) 98, 536, 560
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 7 cut(s) 285, 323, 422, 453, 468, 579, 641
MspR9I CCNGG 4 cut(s) 224, 579, 580, 641
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 8 cut(s) 20, 100, 142, 213, 482, 525, 566, 665
NaeI GCCGGC 1 cut(s) 286
NarI GGCGCC 1 cut(s) 485
NciI CCSGG 3 cut(s) 579, 580, 641
NdeII GATC 3 cut(s) 237, 412, 464
NgoMIV GCCGGC 1 cut(s) 284
NlaIII CATG 4 cut(s) 247, 403, 448, 559
NlaIV GGNNCC 6 cut(s) 321, 414, 472, 486, 619, 645
NmeAIII GCCGAG 2 cut(s) 51, 101
NspI RCATGY 1 cut(s) 448
PciI ACATGT 1 cut(s) 444
PcsI WCGNNNNNNNCGW 2 cut(s) 198, 345
PdiI GCCGGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 432
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 2 cut(s) 229, 628
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 7 cut(s) 25, 107, 125, 196, 218, 475, 670
PluTI GGCGCC 1 cut(s) 488
PmaCI CACGTG 1 cut(s) 481
PmlI CACGTG 1 cut(s) 481
Ppu21I YACGTR 1 cut(s) 481
PscI ACATGT 1 cut(s) 444
Psp6I CCWGG 1 cut(s) 222
PspCI CACGTG 1 cut(s) 481
PspFI CCCAGC 2 cut(s) 456, 694
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 6 cut(s) 321, 414, 472, 486, 619, 645
PspPI GGNCC 4 cut(s) 39, 507, 517, 617
PstNI CAGNNNCTG 1 cut(s) 229
PsuI RGATCY 2 cut(s) 412, 464
PsyI GACNNNGTC 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 698
RseI CAYNNNNRTG 1 cut(s) 596
Rsr2I CGGWCCG 1 cut(s) 39
RsrII CGGWCCG 1 cut(s) 39
SatI GCNGC 7 cut(s) 24, 106, 124, 195, 217, 474, 669
Sau3AI GATC 3 cut(s) 237, 412, 464
Sau96I GGNCC 4 cut(s) 39, 507, 517, 617
ScrFI CCNGG 4 cut(s) 224, 579, 580, 641
SduI GDGCHC 2 cut(s) 72, 82
SfaNI GCATC 2 cut(s) 228, 694
SfoI GGCGCC 1 cut(s) 486
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 1 cut(s) 39
SmaI CCCGGG 1 cut(s) 580
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
SsiI CCGC 6 cut(s) 33, 105, 195, 417, 474, 526
SspDI GGCGCC 1 cut(s) 484
StyD4I CCNGG 4 cut(s) 222, 577, 578, 639
StyI CCWWGG 2 cut(s) 537, 549
TaaI ACNGT 3 cut(s) 43, 115, 494
TaiI ACGT 4 cut(s) 9, 204, 378, 483
TaqI TCGA 4 cut(s) 90, 209, 336, 348
TauI GCSGC 3 cut(s) 108, 197, 476
TfiI GAWTC 1 cut(s) 432
TscAI CASTG 1 cut(s) 598
TseI GCWGC 4 cut(s) 23, 123, 216, 668
TspDTI ATGAA 2 cut(s) 17, 379
TspGWI ACGGA 1 cut(s) 520
TspMI CCCGGG 1 cut(s) 578
TspRI CASTG 1 cut(s) 598
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 2 cut(s) 229, 628
VpaK11BI GGWCC 1 cut(s) 39
XceI RCATGY 1 cut(s) 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 508
XmaI CCCGGG 1 cut(s) 578
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.