Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Reverse (-)

31121183 .. 31124019

Gene Structure 2837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1247500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCCACATTACAAGTCCCGTCCACTACGCATACTTCACATTTTACAGAGAAGAAACAGCCCACTCGTGGCCGAAACCGAGAGACAGAGAAGAAAGAGCAGAGAGGGATGAACGTGGCGAGCAAGGGAGGCGGAGGAGGCAAGGCGGCGTCGCGGATCGTAGTCATAACGGGAGTGAGCAAAGGGCTGGGGCGAGCACTGGCGGTGGAGATGGCGAAGAGGGGCCACACCGTAATCGGCTGCTCCCGTTCCCAAGATAAGCTCAACGCCCTCCAATCCGAGCTCTCCTCCGACAAACACCTCTTCCTCAACGCCGACGTCAGGTCTAATAACAGCATTGCTGATCTGGCGCGAGTTGTTATGGAGAAGAGGGGAATCCCAGATATTGTAGTGAACAATGCAGGCATGATCAACGACAACAAGAAGCTTTGGGAGGTTCCGGTGGAAGAATTCGACAGCGTGATAGATACCAACGTTAAAGGAGTCGCTAACGTGCTGCGCCACTTCATTCCACTGATGCTGTCGCGGAATGAGGGGAAGAACCCATCCGGAATCATAGTAAACATCTCCTCCGGGTGGGGTCGATCGGGTGCAGCGCACGTGGCACCATACTGTGCGTCGAAATGGGCGGTGGAGGGGTTGACTCGATCGGTGGCGAGGGAAGTACCGAGTGAGATGGCGGTTCTTGCACTCAGCCCGGGTGTGATACACACGGACATGCTTGAGTCGTGTTTTGGGGAGTCTAGTATGAAGAATTATCCGAAACCTGATGCGTGGGCCGTCAGAGCTGCTACCATGATTTTGAATCTTACGGCGGCTGACAACGGTGCTTCTCTTAACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

282

Amino Acids

30.16

Weight (kDa)

9.49

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	53 - 243	3.3e-47	short chain dehydrogenase
KR	PF08659	54 - 220	1.2e-07	KR domain
adh_short_C2	PF13561	58 - 256	1.1e-34	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	604
AccII	CGCG	3 cut(s)	154, 352, 526
AccIII	TCCGGA	1 cut(s)	548
AciI	CCGC	8 cut(s)	132, 146, 154, 203, 526, 629, 680, 815
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	449
AcvI	CACGTG	1 cut(s)	601
AcyI	GRCGYC	2 cut(s)	149, 318
AfaI	GTAC	1 cut(s)	666
AfiI	CCNNNNNNNGG	3 cut(s)	68, 321, 576
AgsI	TTSAA	1 cut(s)	805
AhdI	GACNNNNNGTC	1 cut(s)	322
AluBI	AGCT	4 cut(s)	262, 283, 427, 788
AluI	AGCT	4 cut(s)	262, 283, 427, 788
Alw21I	GWGCWC	2 cut(s)	199, 285
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	697
Aor13HI	TCCGGA	1 cut(s)	548
AoxI	GGCC	3 cut(s)	70, 223, 777
ApeKI	GCWGC	4 cut(s)	240, 496, 593, 788
ApoI	RAATTY	1 cut(s)	449
AspLEI	GCGC	3 cut(s)	352, 501, 598
AspS9I	GGNCC	2 cut(s)	223, 777
AsuC2I	CCSGG	3 cut(s)	574, 698, 699
AvaI	CYCGRG	1 cut(s)	697
BaeI	ACNNNNGTAYC	2 cut(s)	459, 492
BanI	GGYRCC	1 cut(s)	604
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	66
BbrPI	CACGTG	1 cut(s)	601
Bbv12I	GWGCWC	2 cut(s)	199, 285
BbvI	GCAGC	4 cut(s)	227, 483, 605, 775
BccI	CCATC	3 cut(s)	205, 553, 670
BceAI	ACGGC	2 cut(s)	764, 828
BclI	TGATCA	1 cut(s)	408
BcnI	CCSGG	3 cut(s)	574, 698, 699
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	744
BisI	GCNGC	6 cut(s)	147, 241, 497, 594, 789, 816
BlsI	GCNGC	6 cut(s)	148, 242, 498, 595, 790, 817
Bme1390I	CCNGG	3 cut(s)	574, 698, 699
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmeT110I	CYCGRG	1 cut(s)	697
BmgT120I	GGNCC	2 cut(s)	223, 777
BmiI	GGNNCC	3 cut(s)	224, 438, 606
BmrFI	CCNGG	3 cut(s)	574, 698, 699
BmsI	GCATC	2 cut(s)	507, 760
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpuEI	CTTGAG	1 cut(s)	743
BpuMI	CCSGG	3 cut(s)	574, 698, 699
BsaAI	YACGTR	1 cut(s)	601
BsaHI	GRCGYC	2 cut(s)	149, 318
BsaJI	CCNNGG	1 cut(s)	697
BsaWI	WCCGGW	2 cut(s)	439, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 321, 576
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	336
BseAI	TCCGGA	1 cut(s)	548
BseDI	CCNNGG	1 cut(s)	697
BseGI	GGATG	2 cut(s)	114, 545
BseLI	CCNNNNNNNGG	3 cut(s)	68, 321, 576
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	706
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	3 cut(s)	150, 277, 559
BseXI	GCAGC	4 cut(s)	227, 483, 605, 775
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	3 cut(s)	154, 352, 526
Bsh1285I	CGRYCG	2 cut(s)	587, 650
BshFI	GGCC	3 cut(s)	72, 225, 779
BshNI	GGYRCC	1 cut(s)	604
BsiEI	CGRYCG	2 cut(s)	587, 650
BsiHKAI	GWGCWC	2 cut(s)	199, 285
BsiHKCI	CYCGRG	1 cut(s)	697
BsiSI	CCGG	4 cut(s)	440, 549, 573, 698
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	3 cut(s)	68, 321, 576
BsmAI	GTCTC	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	2
BsnI	GGCC	3 cut(s)	72, 225, 779
BsoBI	CYCGRG	1 cut(s)	697
Bsp1286I	GDGCHC	2 cut(s)	199, 285
Bsp13I	TCCGGA	1 cut(s)	548
Bsp143I	GATC	5 cut(s)	156, 343, 408, 584, 647
BspACI	CCGC	8 cut(s)	132, 146, 154, 203, 526, 629, 680, 815
BspANI	GGCC	3 cut(s)	72, 225, 779
BspCNI	CTCAG	1 cut(s)	705
BspEI	TCCGGA	1 cut(s)	548
BspFNI	CGCG	3 cut(s)	154, 352, 526
BspLI	GGNNCC	3 cut(s)	224, 438, 606
BspPI	GGATC	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	604
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	697
BssMI	GATC	5 cut(s)	156, 343, 408, 584, 647
BssNI	GRCGYC	2 cut(s)	149, 318
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	232, 614, 827
Bst6I	CTCTTC	3 cut(s)	212, 308, 362
BstACI	GRCGYC	2 cut(s)	149, 318
BstBAI	YACGTR	1 cut(s)	601
BstC8I	GCNNGC	3 cut(s)	121, 195, 403
BstDEI	CTNAG	1 cut(s)	692
BstF5I	GGATG	2 cut(s)	114, 545
BstFNI	CGCG	3 cut(s)	154, 352, 526
BstHHI	GCGC	3 cut(s)	352, 501, 598
BstKTI	GATC	5 cut(s)	159, 346, 411, 587, 650
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	5 cut(s)	156, 343, 408, 584, 647
BstMCI	CGRYCG	2 cut(s)	587, 650
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 138, 347, 602, 686, 785
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	3 cut(s)	572, 696, 697
BstUI	CGCG	3 cut(s)	154, 352, 526
BstV1I	GCAGC	4 cut(s)	227, 483, 605, 775
BsuRI	GGCC	3 cut(s)	72, 225, 779
BtsCI	GGATG	2 cut(s)	114, 545
BtsIMutI	CAGTG	2 cut(s)	197, 512
Cac8I	GCNNGC	3 cut(s)	121, 195, 403
CfoI	GCGC	3 cut(s)	352, 501, 598
Cfr13I	GGNCC	2 cut(s)	223, 777
Cfr9I	CCCGGG	1 cut(s)	697
CseI	GACGC	2 cut(s)	138, 606
Csp6I	GTAC	1 cut(s)	665
CviAII	CATG	3 cut(s)	406, 718, 796
CviQI	GTAC	1 cut(s)	665
DdeI	CTNAG	1 cut(s)	692
DpnI	GATC	5 cut(s)	158, 345, 410, 586, 649
DpnII	GATC	5 cut(s)	156, 343, 408, 584, 647
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	212, 308, 362
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	3 cut(s)	212, 308, 362
EciI	GGCGGA	1 cut(s)	147
Ecl136II	GAGCTC	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
Eco72I	CACGTG	1 cut(s)	601
Eco88I	CYCGRG	1 cut(s)	697
EcoICRI	GAGCTC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	285
FaeI	CATG	3 cut(s)	409, 721, 799
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	3 cut(s)	405, 717, 795
FbaI	TGATCA	1 cut(s)	408
Fnu4HI	GCNGC	6 cut(s)	147, 241, 497, 594, 789, 816
FokI	GGATG	2 cut(s)	121, 532
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	6 cut(s)	147, 241, 497, 594, 789, 816
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	3 cut(s)	351, 500, 597
GluI	GCNGC	6 cut(s)	147, 241, 497, 594, 789, 816
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	3 cut(s)	72, 225, 779
HapII	CCGG	4 cut(s)	440, 549, 573, 698
HgaI	GACGC	2 cut(s)	138, 606
HhaI	GCGC	3 cut(s)	352, 501, 598
Hin1I	GRCGYC	2 cut(s)	149, 318
Hin1II	CATG	3 cut(s)	409, 721, 799
Hin6I	GCGC	3 cut(s)	350, 499, 596
HinP1I	GCGC	3 cut(s)	350, 499, 596
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	7 cut(s)	375, 483, 552, 643, 725, 740, 805
HpaII	CCGG	4 cut(s)	440, 549, 573, 698
Hpy166II	GTNNAC	5 cut(s)	6, 24, 394, 562, 642
Hpy188I	TCNGA	4 cut(s)	280, 292, 762, 785
Hpy188III	TCNNGA	1 cut(s)	549
Hpy8I	GTNNAC	5 cut(s)	6, 24, 394, 562, 642
Hpy99I	CGWCG	3 cut(s)	154, 320, 622
HpyCH4III	ACNGT	3 cut(s)	232, 614, 827
HpyCH4IV	ACGT	6 cut(s)	114, 318, 474, 492, 600, 840
HpyCH4V	TGCA	3 cut(s)	401, 593, 689
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 138, 347, 602, 686, 785
HpyF3I	CTNAG	1 cut(s)	692
HpySE526I	ACGT	6 cut(s)	114, 318, 474, 492, 600, 840
Hsp92I	GRCGYC	2 cut(s)	149, 318
Hsp92II	CATG	3 cut(s)	409, 721, 799
HspAI	GCGC	3 cut(s)	350, 499, 596
Kpn2I	TCCGGA	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	408
Kzo9I	GATC	5 cut(s)	156, 343, 408, 584, 647
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	4 cut(s)	227, 483, 605, 775
LweI	GCATC	2 cut(s)	507, 760
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	6 cut(s)	114, 318, 474, 492, 600, 840
MalI	GATC	5 cut(s)	158, 345, 410, 586, 649
MboI	GATC	5 cut(s)	156, 343, 408, 584, 647
MboII	GAAGA	8 cut(s)	64, 103, 229, 295, 379, 458, 550, 763
MhlI	GDGCHC	2 cut(s)	199, 285
MluCI	AATT	2 cut(s)	449, 754
MlyI	GAGTC	4 cut(s)	492, 637, 734, 749
MmeI	TCCRAC	1 cut(s)	315
MroI	TCCGGA	1 cut(s)	548
MseI	TTAA	2 cut(s)	477, 837
MslI	CAYNNNNRTG	1 cut(s)	716
MspI	CCGG	4 cut(s)	440, 549, 573, 698
MspR9I	CCNGG	3 cut(s)	574, 698, 699
MvnI	CGCG	3 cut(s)	154, 352, 526
MwoI	GCNNNNNNNGC	6 cut(s)	129, 138, 347, 602, 686, 785
NciI	CCSGG	3 cut(s)	574, 698, 699
NdeII	GATC	5 cut(s)	156, 343, 408, 584, 647
NlaIII	CATG	3 cut(s)	409, 721, 799
NlaIV	GGNNCC	3 cut(s)	224, 438, 606
NspI	RCATGY	1 cut(s)	721
PfeI	GAWTC	3 cut(s)	375, 552, 805
PkrI	GCNGC	6 cut(s)	148, 242, 498, 595, 790, 817
Ple19I	CGATCG	2 cut(s)	587, 650
PleI	GAGTC	4 cut(s)	491, 637, 733, 748
PmaCI	CACGTG	1 cut(s)	601
PmlI	CACGTG	1 cut(s)	601
PpsI	GAGTC	4 cut(s)	491, 637, 733, 748
Ppu21I	YACGTR	1 cut(s)	601
Psp124BI	GAGCTC	1 cut(s)	285
Psp1406I	AACGTT	1 cut(s)	474
PspCI	CACGTG	1 cut(s)	601
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	224, 438, 606
PspPI	GGNCC	2 cut(s)	223, 777
PvuI	CGATCG	2 cut(s)	587, 650
RsaI	GTAC	1 cut(s)	666
RsaNI	GTAC	1 cut(s)	665
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	477, 837
SatI	GCNGC	6 cut(s)	147, 241, 497, 594, 789, 816
Sau3AI	GATC	5 cut(s)	156, 343, 408, 584, 647
Sau96I	GGNCC	2 cut(s)	223, 777
SchI	GAGTC	4 cut(s)	492, 637, 734, 749
ScrFI	CCNGG	3 cut(s)	574, 698, 699
SduI	GDGCHC	2 cut(s)	199, 285
SfaNI	GCATC	2 cut(s)	507, 760
SmaI	CCCGGG	1 cut(s)	699
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	2 cut(s)	449, 754
SsiI	CCGC	8 cut(s)	132, 146, 154, 203, 526, 629, 680, 815
SspMI	CTAG	1 cut(s)	744
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	3 cut(s)	572, 696, 697
TaaI	ACNGT	3 cut(s)	232, 614, 827
TaiI	ACGT	6 cut(s)	117, 321, 477, 495, 603, 843
TaqI	TCGA	4 cut(s)	453, 583, 620, 646
TasI	AATT	2 cut(s)	449, 754
TauI	GCSGC	2 cut(s)	149, 818
TfiI	GAWTC	3 cut(s)	375, 552, 805
Tru1I	TTAA	2 cut(s)	477, 837
Tru9I	TTAA	2 cut(s)	477, 837
TscAI	CASTG	2 cut(s)	204, 519
TseI	GCWGC	4 cut(s)	240, 496, 593, 788
TspDTI	ATGAA	3 cut(s)	125, 496, 764
TspGWI	ACGGA	1 cut(s)	728
TspMI	CCCGGG	1 cut(s)	697
TspRI	CASTG	2 cut(s)	204, 519
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	721
XmaI	CCCGGG	1 cut(s)	697
XspI	CTAG	1 cut(s)	744
ZraI	GACGTC	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.