Rroxscaffold_3G00239760

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
30454434 .. 30458238
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239760.1

Sequence Viewer

Length: 843 bp
ATGAACGTGGTGGCAAGCAAAGCAGCCGCCAATGGCAGTCGGACCGTTTTGATAACGGGGGTGAGCAAAGGCCTAGGCCGAGCCCTCGCCGTAGAGATGGCCAAGAGAGGCCACACCGTAATCGGCTGCTCCCGTTCTCAGGATAAGCTCACCTCCCTCCAATCCGAACTCTCCGACAAGCACCTCTTCCTCAGCGCCGACGTCGTTCGTACTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATTCTTTCCTCATCAAAAATTTTCCTTCAATTTCAATCTCAATTCGAATTCGATTGAACTTTTGCAGAGCTCGAATAGCAGCGTCCAAGAGCTGGCTCGGGTTGTGATGGAGAAGAAGGGAGTCCCGGATATCATAGTAAACAATGCCGGAGTCATCAACAACAACAACAAGCTCTGGGAGGTTCCGGCCGAGGAGTTCGACAGCGTCGTCGACACCAATGTCAAGGGGGTCGCCAACGTGTTGCGCCACTTCATTCCTCTGATGCTCAAGAGGGATCCCGGTCCGGCCACCGGAATCATAGTCAACATGTCTTCCGGCTGGGGCAGATCCGGTGCCGCACACGTGGCGCCTTACTGTGCCTCCAAATGGGCCGTGGAGGGTTTGACCCGGTCCGTGGCCAAGGAGTTGCCAAAGGACATGGCCACTGTGGCTCTCAATCCCGGGGTTATACACACTGATATGCTTGTTTCCTGCTTTGGGCCGCAGAATATGGATAGTTACCCGGAGCCTCGGGTTTGGGCCGTCAAGGCTGCTACGATGATTTTGCATCTTACACCAGCTGACAATGGTGCTTCTCTCACTGTCTGA

Protein Analysis

280

Amino Acids

29.98

Weight (kDa)

8.99

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 68 6.3e-09 short chain dehydrogenase
adh_short PF00106 109 - 241 4.7e-29 short chain dehydrogenase
adh_short_C2 PF13561 109 - 245 7.8e-24 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 461, 473
AatII GACGTC 1 cut(s) 204
AccB1I GGYRCC 2 cut(s) 587, 601
AccB7I CCANNNNNTGG 1 cut(s) 346
AccI GTMKAC 1 cut(s) 465
AciI CCGC 3 cut(s) 27, 591, 737
AclWI GGATC 3 cut(s) 524, 537, 576
AcoI YGGCCR 5 cut(s) 99, 441, 540, 651, 675
AcsI RAATTY 2 cut(s) 272, 301
AcvI CACGTG 1 cut(s) 598
AcyI GRCGYC 2 cut(s) 201, 602
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 6 cut(s) 139, 346, 545, 621, 649, 732
AflIII ACRYGT 3 cut(s) 492, 561, 595
AgsI TTSAA 3 cut(s) 283, 289, 311
AluBI AGCT 5 cut(s) 148, 324, 346, 427, 815
AluI AGCT 5 cut(s) 148, 324, 346, 427, 815
Alw21I GWGCWC 1 cut(s) 326
AlwI GGATC 3 cut(s) 524, 537, 576
Ama87I CYCGRG 3 cut(s) 351, 695, 765
ApeKI GCWGC 4 cut(s) 23, 126, 333, 785
ApoI RAATTY 2 cut(s) 272, 301
AspA2I CCTAGG 1 cut(s) 73
AspLEI GCGC 3 cut(s) 197, 501, 604
AspS9I GGNCC 6 cut(s) 42, 536, 624, 645, 734, 774
AsuC2I CCSGG 6 cut(s) 380, 534, 643, 696, 697, 758
AsuHPI GGTGA 2 cut(s) 73, 142
AsuII TTCGAA 1 cut(s) 299
AvaI CYCGRG 3 cut(s) 351, 695, 765
AvaII GGWCC 3 cut(s) 42, 536, 645
AvrII CCTAGG 1 cut(s) 73
BalI TGGCCA 3 cut(s) 101, 653, 677
BamHI GGATCC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 587, 601
BanII GRGCYC 2 cut(s) 85, 326
BbrPI CACGTG 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 191
BbvI GCAGC 4 cut(s) 35, 113, 345, 772
BccI CCATC 2 cut(s) 91, 355
BceAI ACGGC 3 cut(s) 74, 611, 761
BcgI CGANNNNNNTGC 2 cut(s) 781, 815
BcnI CCSGG 6 cut(s) 380, 534, 643, 696, 697, 758
BfaI CTAG 1 cut(s) 74
BfoI RGCGCY 2 cut(s) 198, 605
BglI GCCNNNNNGGC 2 cut(s) 683, 782
BisI GCNGC 7 cut(s) 24, 27, 127, 334, 591, 737, 786
BlnI CCTAGG 1 cut(s) 73
BlsI GCNGC 7 cut(s) 25, 28, 128, 335, 592, 738, 787
Bme1390I CCNGG 6 cut(s) 380, 534, 643, 696, 697, 758
Bme18I GGWCC 3 cut(s) 42, 536, 645
BmeT110I CYCGRG 3 cut(s) 351, 695, 765
BmgT120I GGNCC 6 cut(s) 42, 536, 624, 645, 734, 774
BmiI GGNNCC 5 cut(s) 438, 531, 589, 603, 762
BmrFI CCNGG 6 cut(s) 380, 534, 643, 696, 697, 758
BmsI GCATC 2 cut(s) 507, 811
BpiI GAAGAC 1 cut(s) 558
Bpu10I CCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 6 cut(s) 380, 534, 643, 696, 697, 758
BsaAI YACGTR 1 cut(s) 598
BsaHI GRCGYC 2 cut(s) 201, 602
BsaJI CCNNGG 8 cut(s) 73, 444, 627, 648, 654, 695, 696, 764
BsaWI WCCGGW 2 cut(s) 545, 584
BsaXI ACNNNNNCTCC 2 cut(s) 599, 629
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 346, 545, 621, 649, 732
BseDI CCNNGG 8 cut(s) 73, 444, 627, 648, 654, 695, 696, 764
BseLI CCNNNNNNNGG 6 cut(s) 139, 346, 545, 621, 649, 732
BseMII CTCAG 2 cut(s) 152, 205
BseRI GAGGAG 2 cut(s) 208, 461
BseX3I CGGCCG 1 cut(s) 441
BseXI GCAGC 4 cut(s) 35, 113, 345, 772
BseYI CCCAGC 1 cut(s) 573
Bsh1285I CGRYCG 1 cut(s) 444
BshNI GGYRCC 2 cut(s) 587, 601
BsiEI CGRYCG 1 cut(s) 444
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 3 cut(s) 351, 695, 765
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 6 cut(s) 139, 346, 545, 621, 649, 732
BsmFI GGGAC 1 cut(s) 362
BsoBI CYCGRG 3 cut(s) 351, 695, 765
Bsp119I TTCGAA 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 85, 326
Bsp143I GATC 2 cut(s) 529, 581
BspACI CCGC 3 cut(s) 27, 591, 737
BspCNI CTCAG 2 cut(s) 151, 204
BspLI GGNNCC 5 cut(s) 438, 531, 589, 603, 762
BspPI GGATC 3 cut(s) 524, 537, 576
BspT104I TTCGAA 1 cut(s) 299
BspT107I GGYRCC 2 cut(s) 587, 601
BssECI CCNNGG 8 cut(s) 73, 444, 627, 648, 654, 695, 696, 764
BssMI GATC 2 cut(s) 529, 581
BssNI GRCGYC 2 cut(s) 201, 602
BssT1I CCWWGG 2 cut(s) 73, 654
Bst4CI ACNGT 5 cut(s) 46, 118, 611, 682, 838
Bst6I CTCTTC 1 cut(s) 191
BstACI GRCGYC 2 cut(s) 201, 602
BstBAI YACGTR 1 cut(s) 598
BstBI TTCGAA 1 cut(s) 299
BstC8I GCNNGC 2 cut(s) 16, 348
BstDEI CTNAG 2 cut(s) 138, 191
BstDSI CCRYGG 2 cut(s) 627, 648
BstH2I RGCGCY 2 cut(s) 198, 605
BstHHI GCGC 3 cut(s) 197, 501, 604
BstKTI GATC 2 cut(s) 532, 584
BstMBI GATC 2 cut(s) 529, 581
BstMCI CGRYCG 1 cut(s) 444
BstMWI GCNNNNNNNGC 5 cut(s) 20, 330, 599, 683, 782
BstNSI RCATGY 1 cut(s) 565
BstSCI CCNGG 6 cut(s) 378, 532, 641, 694, 695, 756
BstV1I GCAGC 4 cut(s) 35, 113, 345, 772
BstV2I GAAGAC 1 cut(s) 558
BstX2I RGATCY 2 cut(s) 529, 581
BstYI RGATCY 2 cut(s) 529, 581
BstZI CGGCCG 1 cut(s) 441
BtgI CCRYGG 2 cut(s) 627, 648
BtsIMutI CAGTG 3 cut(s) 678, 708, 834
Cac8I GCNNGC 2 cut(s) 16, 348
CfoI GCGC 3 cut(s) 197, 501, 604
Cfr13I GGNCC 6 cut(s) 42, 536, 624, 645, 734, 774
Cfr9I CCCGGG 1 cut(s) 695
CpoI CGGWCCG 3 cut(s) 42, 536, 645
CseI GACGC 2 cut(s) 325, 448
Csp6I GTAC 1 cut(s) 210
CspI CGGWCCG 3 cut(s) 42, 536, 645
CviAII CATG 2 cut(s) 562, 673
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 138, 191
DinI GGCGCC 1 cut(s) 603
DpnI GATC 2 cut(s) 531, 583
DpnII GATC 2 cut(s) 529, 581
DrdI GACNNNNNNGTC 2 cut(s) 461, 473
DseDI GACNNNNNNGTC 2 cut(s) 461, 473
EaeI YGGCCR 5 cut(s) 99, 441, 540, 651, 675
EagI CGGCCG 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 324
EclXI CGGCCG 1 cut(s) 441
Eco130I CCWWGG 2 cut(s) 73, 654
Eco147I AGGCCT 1 cut(s) 72
Eco24I GRGCYC 2 cut(s) 85, 326
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 3 cut(s) 42, 536, 645
Eco52I CGGCCG 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 324
Eco72I CACGTG 1 cut(s) 598
Eco88I CYCGRG 3 cut(s) 351, 695, 765
EcoICRI GAGCTC 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 301
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 2 cut(s) 73, 654
EcoT38I GRGCYC 2 cut(s) 85, 326
EgeI GGCGCC 1 cut(s) 603
EheI GGCGCC 1 cut(s) 603
ErhI CCWWGG 2 cut(s) 73, 654
FaeI CATG 2 cut(s) 565, 676
FaiI YATR 7 cut(s) 389, 554, 563, 674, 704, 716, 746
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 561, 672
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 7 cut(s) 24, 27, 127, 334, 591, 737, 786
FriOI GRGCYC 2 cut(s) 85, 326
Fsp4HI GCNGC 7 cut(s) 24, 27, 127, 334, 591, 737, 786
FspBI CTAG 1 cut(s) 74
GlaI GCGC 3 cut(s) 196, 500, 603
GluI GCNGC 7 cut(s) 24, 27, 127, 334, 591, 737, 786
GsaI CCCAGC 1 cut(s) 577
HaeII RGCGCY 2 cut(s) 198, 605
HgaI GACGC 2 cut(s) 325, 448
HhaI GCGC 3 cut(s) 197, 501, 604
Hin1I GRCGYC 2 cut(s) 201, 602
Hin1II CATG 2 cut(s) 565, 676
Hin6I GCGC 3 cut(s) 195, 499, 602
HinP1I GCGC 3 cut(s) 195, 499, 602
HincII GTYRAC 2 cut(s) 466, 559
HindII GTYRAC 2 cut(s) 466, 559
HinfI GANTC 3 cut(s) 375, 405, 549
HphI GGTGA 2 cut(s) 73, 142
Hpy166II GTNNAC 3 cut(s) 394, 466, 559
Hpy188I TCNGA 5 cut(s) 42, 166, 175, 516, 842
Hpy188III TCNNGA 2 cut(s) 140, 523
Hpy8I GTNNAC 3 cut(s) 394, 466, 559
Hpy99I CGWCG 4 cut(s) 203, 206, 464, 467
HpyAV CCTTC 2 cut(s) 289, 364
HpyCH4III ACNGT 5 cut(s) 46, 118, 611, 682, 838
HpyCH4IV ACGT 4 cut(s) 6, 201, 492, 597
HpyCH4V TGCA 2 cut(s) 319, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 330, 599, 683, 782
HpyF3I CTNAG 2 cut(s) 138, 191
HpySE526I ACGT 4 cut(s) 6, 201, 492, 597
Hsp92I GRCGYC 2 cut(s) 201, 602
Hsp92II CATG 2 cut(s) 565, 676
HspAI GCGC 3 cut(s) 195, 499, 602
KasI GGCGCC 1 cut(s) 601
Kzo9I GATC 2 cut(s) 529, 581
LmnI GCTCC 2 cut(s) 134, 760
Lsp1109I GCAGC 4 cut(s) 35, 113, 345, 772
LweI GCATC 2 cut(s) 507, 811
MaeI CTAG 1 cut(s) 74
MaeII ACGT 4 cut(s) 6, 201, 492, 597
MaeIII GTNAC 1 cut(s) 752
MalI GATC 2 cut(s) 531, 583
MboI GATC 2 cut(s) 529, 581
MboII GAAGA 3 cut(s) 178, 379, 558
MflI RGATCY 2 cut(s) 529, 581
MhlI GDGCHC 2 cut(s) 85, 326
MlsI TGGCCA 3 cut(s) 101, 653, 677
MluCI AATT 4 cut(s) 272, 283, 295, 301
MluNI TGGCCA 3 cut(s) 101, 653, 677
Mly113I GGCGCC 1 cut(s) 602
MlyI GAGTC 2 cut(s) 384, 414
MmeI TCCRAC 2 cut(s) 20, 198
Mox20I TGGCCA 3 cut(s) 101, 653, 677
MscI TGGCCA 3 cut(s) 101, 653, 677
MslI CAYNNNNRTG 1 cut(s) 713
Msp20I TGGCCA 3 cut(s) 101, 653, 677
MspA1I CMGCKG 1 cut(s) 815
MspR9I CCNGG 6 cut(s) 380, 534, 643, 696, 697, 758
MwoI GCNNNNNNNGC 5 cut(s) 20, 330, 599, 683, 782
NarI GGCGCC 1 cut(s) 602
NciI CCSGG 6 cut(s) 380, 534, 643, 696, 697, 758
NdeII GATC 2 cut(s) 529, 581
NlaIII CATG 2 cut(s) 565, 676
NlaIV GGNNCC 5 cut(s) 438, 531, 589, 603, 762
NmeAIII GCCGAG 2 cut(s) 104, 469
NspI RCATGY 1 cut(s) 565
NspV TTCGAA 1 cut(s) 299
PceI AGGCCT 1 cut(s) 72
PciI ACATGT 1 cut(s) 561
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 1 cut(s) 549
PflFI GACNNNGTC 2 cut(s) 458, 643
PflMI CCANNNNNTGG 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 7 cut(s) 25, 28, 128, 335, 592, 738, 787
PleI GAGTC 2 cut(s) 383, 413
PluTI GGCGCC 1 cut(s) 605
PmaCI CACGTG 1 cut(s) 598
PmlI CACGTG 1 cut(s) 598
PpsI GAGTC 2 cut(s) 383, 413
Ppu21I YACGTR 1 cut(s) 598
PscI ACATGT 1 cut(s) 561
Psp124BI GAGCTC 1 cut(s) 326
PspCI CACGTG 1 cut(s) 598
PspFI CCCAGC 1 cut(s) 573
PspN4I GGNNCC 5 cut(s) 438, 531, 589, 603, 762
PspPI GGNCC 6 cut(s) 42, 536, 624, 645, 734, 774
PsuI RGATCY 2 cut(s) 529, 581
PsyI GACNNNGTC 2 cut(s) 458, 643
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 1 cut(s) 713
Rsr2I CGGWCCG 3 cut(s) 42, 536, 645
RsrII CGGWCCG 3 cut(s) 42, 536, 645
SacI GAGCTC 1 cut(s) 326
SalI GTCGAC 1 cut(s) 464
SatI GCNGC 7 cut(s) 24, 27, 127, 334, 591, 737, 786
Sau3AI GATC 2 cut(s) 529, 581
Sau96I GGNCC 6 cut(s) 42, 536, 624, 645, 734, 774
SchI GAGTC 2 cut(s) 384, 414
ScrFI CCNGG 6 cut(s) 380, 534, 643, 696, 697, 758
SduI GDGCHC 2 cut(s) 85, 326
SfaNI GCATC 2 cut(s) 507, 811
SfoI GGCGCC 1 cut(s) 603
SfuI TTCGAA 1 cut(s) 299
SinI GGWCC 3 cut(s) 42, 536, 645
SmaI CCCGGG 1 cut(s) 697
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 4 cut(s) 272, 283, 295, 301
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 3 cut(s) 27, 591, 737
SspDI GGCGCC 1 cut(s) 601
SspMI CTAG 1 cut(s) 74
SstI GAGCTC 1 cut(s) 326
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 6 cut(s) 378, 532, 641, 694, 695, 756
StyI CCWWGG 2 cut(s) 73, 654
TaaI ACNGT 5 cut(s) 46, 118, 611, 682, 838
TaiI ACGT 4 cut(s) 9, 204, 495, 600
TaqI TCGA 5 cut(s) 299, 305, 326, 453, 465
TasI AATT 4 cut(s) 272, 283, 295, 301
TauI GCSGC 3 cut(s) 29, 593, 739
TfiI GAWTC 1 cut(s) 549
TscAI CASTG 3 cut(s) 685, 715, 841
TseI GCWGC 4 cut(s) 23, 126, 333, 785
TspDTI ATGAA 2 cut(s) 17, 496
TspGWI ACGGA 1 cut(s) 637
TspMI CCCGGG 1 cut(s) 695
TspRI CASTG 3 cut(s) 685, 715, 841
Tth111I GACNNNGTC 2 cut(s) 458, 643
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 3 cut(s) 42, 536, 645
XapI RAATTY 2 cut(s) 272, 301
XceI RCATGY 1 cut(s) 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 625
XmaI CCCGGG 1 cut(s) 695
XmaJI CCTAGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 465
XspI CTAG 1 cut(s) 74
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.