Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001136.1

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Reverse (-)

152912 .. 153208

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001136.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgaacgtggtggcaagcaaagaagccgccaatggcagtcggactgttttgataatgggggtgagcaaaggcctaggccgagccctcgccatagagatggccaagagacgccacaccgtaatcggctgctcccattctcaagataagctcaccttcttccaatccaaactcttcgacaagcacatcttcctcagcgccgacgtcattcgtactctctccctctctctctatctattctttcctcatcaaaattttccttcaatttcaatctcaattcgaattcaattgaacttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

98

Amino Acids

10.93

Weight (kDa)

10.37

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	2 cut(s)	250, 279
AcyI	GRCGYC	2 cut(s)	109, 201
AfaI	GTAC	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	261, 267, 284, 289
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	100
AoxI	GGCC	3 cut(s)	70, 76, 99
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	2 cut(s)	250, 279
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	73, 142
AsuII	TTCGAA	1 cut(s)	277
AvrII	CCTAGG	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	198
BisI	GCNGC	2 cut(s)	27, 127
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	2 cut(s)	28, 128
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	123
BsaHI	GRCGYC	2 cut(s)	109, 201
BsaJI	CCNNGG	1 cut(s)	73
BseDI	CCNNGG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	3 cut(s)	72, 78, 101
BsmAI	GTCTC	1 cut(s)	100
BsmBI	CGTCTC	1 cut(s)	100
BsnI	GGCC	3 cut(s)	72, 78, 101
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	72, 78, 101
BspCNI	CTCAG	1 cut(s)	204
BspT104I	TTCGAA	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	73
BssNI	GRCGYC	2 cut(s)	109, 201
BssT1I	CCWWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	46, 118
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	2 cut(s)	109, 201
BstBI	TTCGAA	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstMAI	GTCTC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	72, 78, 101
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	1 cut(s)	197
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	210
CviJI	RGCY	7 cut(s)	26, 72, 78, 83, 101, 126, 148
CviKI_1	RGCY	7 cut(s)	26, 72, 78, 83, 101, 126, 148
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	100
FaiI	YATR	1 cut(s)	92
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 170, 202
Fnu4HI	GCNGC	2 cut(s)	27, 127
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	27, 127
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	2 cut(s)	27, 127
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	3 cut(s)	72, 78, 101
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	2 cut(s)	109, 201
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HphI	GGTGA	2 cut(s)	73, 142
Hpy188I	TCNGA	1 cut(s)	42
Hpy188III	TCNNGA	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	163, 267
HpyCH4III	ACNGT	2 cut(s)	46, 118
HpyCH4IV	ACGT	2 cut(s)	6, 201
HpyF3I	CTNAG	1 cut(s)	191
HpySE526I	ACGT	2 cut(s)	6, 201
Hsp92I	GRCGYC	2 cut(s)	109, 201
HspAI	GCGC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	2 cut(s)	6, 201
MboII	GAAGA	3 cut(s)	148, 163, 178
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	5 cut(s)	250, 261, 273, 279, 284
MluNI	TGGCCA	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	20
MnlI	CCTC	4 cut(s)	95, 200, 230, 252
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	95
Msp20I	TGGCCA	1 cut(s)	101
MunI	CAATTG	1 cut(s)	284
NmeAIII	GCCGAG	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	28, 128
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	95
SatI	GCNGC	2 cut(s)	27, 127
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	4 cut(s)	9, 150, 155, 204
SfuI	TTCGAA	1 cut(s)	277
SgeI	CNNG	8 cut(s)	19, 27, 86, 92, 98, 115, 152, 190
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	5 cut(s)	250, 261, 273, 279, 284
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	46, 118
TaiI	ACGT	2 cut(s)	9, 204
TaqI	TCGA	2 cut(s)	174, 277
TasI	AATT	5 cut(s)	250, 261, 273, 279, 284
TauI	GCSGC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	250, 279
XmaJI	CCTAGG	1 cut(s)	73
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.