Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Forward (+)

16024762 .. 16025373

Gene Structure 612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0189800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAAGCTTATCTTATGCTGGCTGTAGTTGTATCCATTCTGCAATTGCTTAACCACATAAGCCTATGTACTGCAACAGGAACTTTTTCGGGGGAAACAAAAACCAACTTCATAAAGACATCATGCAATGCCACAAGGTTTCCTAACTTGTGCTACAACTCTCTCAAAATCTACGTAGGAGAAATCCAAACCAACCCTAAAATACTAGCTCATACTGCTCTCAGCGTGGCTCTTGAATTTGCCAAACAAACTCATGCAACAGTGAAAAAGTTTTCAACATTTCAAGGTTTAGGTCCACTAGTGAGACCAGCAATCTGTAATTGTGGGAAGCAACTTGATATTGCTGTGGAGGAGCTCCAAAATTCTAAAGATCAACTAAGTAAAATAGTTCAAGTCTCTAATTCTGGATTTCAAATAAGCAATATTCAAACATGGGTTAGTGGTGCACTGACAAATGAGAATACCTGCATGGATGGCTTTGGCGAGATCACTCTAAACGGGAAAGTGGAGATTGTTTCTTATAGGCACATAGCTAAAGTCGCACAATTAACGAGCAATGCCTTGACACTCATCAACAGTTATGCGGTATCAATTGAAGTTTCCTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

203

Amino Acids

22.09

Weight (kDa)

8.73

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	36 - 190	8.4e-31	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AciI	CCGC	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	236, 361
AfaI	GTAC	1 cut(s)	70
AgsI	TTSAA	7 cut(s)	236, 276, 284, 392, 413, 428, 596
AhlI	ACTAGT	1 cut(s)	298
AluBI	AGCT	4 cut(s)	8, 209, 355, 533
AluI	AGCT	4 cut(s)	8, 209, 355, 533
Alw21I	GWGCWC	2 cut(s)	357, 448
Alw26I	GTCTC	2 cut(s)	298, 400
Alw44I	GTGCAC	1 cut(s)	444
ApaLI	GTGCAC	1 cut(s)	444
ApoI	RAATTY	2 cut(s)	236, 361
Asp700I	GAANNNNTTC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	293
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	1 cut(s)	448
BanII	GRGCYC	1 cut(s)	357
Bbv12I	GWGCWC	2 cut(s)	357, 448
BccI	CCATC	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	298, 400
BcuI	ACTAGT	1 cut(s)	298
BfaI	CTAG	2 cut(s)	206, 299
BfmI	CTRYAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BsaAI	YACGTR	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	298
Bse3DI	GCAATG	2 cut(s)	133, 562
BseGI	GGATG	1 cut(s)	478
BseMI	GCAATG	2 cut(s)	133, 562
BseMII	CTCAG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	357, 448
BsmAI	GTCTC	2 cut(s)	298, 400
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	357, 448
Bsp143I	GATC	2 cut(s)	370, 486
BspACI	CCGC	1 cut(s)	584
BspCNI	CTCAG	1 cut(s)	234
BspMI	ACCTGC	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	298
BsrDI	GCAATG	2 cut(s)	133, 562
BssMI	GATC	2 cut(s)	370, 486
Bst4CI	ACNGT	2 cut(s)	262, 578
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	221, 377
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	373, 489
BstMAI	GTCTC	2 cut(s)	298, 400
BstMBI	GATC	2 cut(s)	370, 486
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 474, 539
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	448
BstSNI	TACGTA	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	267, 446
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	4 cut(s)	123, 254, 432, 469
CviJI	RGCY	8 cut(s)	8, 23, 63, 209, 230, 355, 477, 533
CviKI_1	RGCY	8 cut(s)	8, 23, 63, 209, 230, 355, 477, 533
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	2 cut(s)	221, 377
DpnI	GATC	2 cut(s)	372, 488
DpnII	GATC	2 cut(s)	370, 486
Ecl136II	GAGCTC	1 cut(s)	355
Eco105I	TACGTA	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	357
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	4 cut(s)	126, 257, 435, 472
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	4 cut(s)	122, 253, 431, 468
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	357
FspBI	CTAG	2 cut(s)	206, 299
Hin1II	CATG	4 cut(s)	126, 257, 435, 472
HindIII	AAGCTT	1 cut(s)	6
Hpy166II	GTNNAC	2 cut(s)	296, 446
Hpy188III	TCNNGA	2 cut(s)	233, 405
Hpy8I	GTNNAC	2 cut(s)	296, 446
HpyCH4III	ACNGT	2 cut(s)	262, 578
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	7 cut(s)	43, 74, 126, 257, 446, 468, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 474, 539
HpyF3I	CTNAG	2 cut(s)	221, 377
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	126, 257, 435, 472
Kzo9I	GATC	2 cut(s)	370, 486
LmnI	GCTCC	2 cut(s)	352, 360
LpnPI	CCDG	5 cut(s)	5, 63, 321, 390, 478
MaeI	CTAG	2 cut(s)	206, 299
MaeII	ACGT	1 cut(s)	174
MalI	GATC	2 cut(s)	372, 488
MboI	GATC	2 cut(s)	370, 486
MfeI	CAATTG	2 cut(s)	44, 591
MhlI	GDGCHC	2 cut(s)	357, 448
MluCI	AATT	7 cut(s)	44, 236, 319, 361, 400, 545, 591
MnlI	CCTC	1 cut(s)	343
MroXI	GAANNNNTTC	1 cut(s)	85
MseI	TTAA	3 cut(s)	51, 548, 610
MunI	CAATTG	2 cut(s)	44, 591
MwoI	GCNNNNNNNGC	3 cut(s)	215, 474, 539
NdeII	GATC	2 cut(s)	370, 486
NlaIII	CATG	4 cut(s)	126, 257, 435, 472
PdmI	GAANNNNTTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	357
PspPI	GGNCC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	51, 548, 610
Sau3AI	GATC	2 cut(s)	370, 486
Sau96I	GGNCC	1 cut(s)	293
SduI	GDGCHC	2 cut(s)	357, 448
SetI	ASST	9 cut(s)	10, 140, 177, 211, 289, 295, 357, 467, 535
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	293
SnaBI	TACGTA	1 cut(s)	175
SpeI	ACTAGT	1 cut(s)	298
Sse9I	AATT	7 cut(s)	44, 236, 319, 361, 400, 545, 591
SsiI	CCGC	1 cut(s)	584
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	2 cut(s)	206, 299
SstI	GAGCTC	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	262, 578
TaiI	ACGT	1 cut(s)	177
TasI	AATT	7 cut(s)	44, 236, 319, 361, 400, 545, 591
TatI	WGTACW	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	51, 548, 610
Tru9I	TTAA	3 cut(s)	51, 548, 610
TscAI	CASTG	2 cut(s)	267, 453
TspDTI	ATGAA	2 cut(s)	17, 100
TspRI	CASTG	2 cut(s)	267, 453
VneI	GTGCAC	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	2 cut(s)	236, 361
XmnI	GAANNNNTTC	1 cut(s)	85
XspI	CTAG	2 cut(s)	206, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.