Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Reverse (-)

39147204 .. 39150870

Gene Structure 3667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19720

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAACGTGGTGGCAAGCAAAGGAGCCGCCAATGGCAGTCGGACCGTTTTGATAACGGGGGTGAGCAAAGGCCTAGGCCTAGCCTTCGCCGTAGAGATGGCCAAGAGAGGCCACACCGTAATTGGCTGCTCCCGTTCTCAGGATAAGCTCACCTCCCTCCAATCTGAACTCTCCGACAAGCACCTCTTCCTCAGTGCCGACGTCAGCTCAAATAGTGGCATCCAAGAGCTGGATCGGGTTGTGATGGAGAAGAAGGGAGTCCCGGATATCATAATAAACAATGCCGGAGTCATCAACAACAACAACAAGCTATGGGAGGTTCCAACCCAGCAGGAGTTAGAGTTTGACAGCATCGTTGACACCAATGTCAAGGGGGTCACGAACGTGTTGCGCCACTTCATTCCTCTGATGCTCAAGAGGGATCCCGGTCTGGCCACCAGAATCATATTCAACATATCTTCCAGCTGGGGTAGATCAGGTGCAGCACACGTGGCGCCTTACTGTGCCTCCAAATGTTTGACCCGGTCGGTGGCTAAGGAGTTGCCGAAGGACGTGGCCATTATGGCTCTCAACCTGGGGGTTATACACACTGATATGCTTGTTTCCTGCTTTGGGCCACAGAATATGGATAGTTACCCGGAGCCTCAGGTTTGGGCTGTCAAGGCTGCTACAATGATATTGCATCTTACACCAGCTGACAATGGTGCTTCTCTCATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

240

Amino Acids

25.79

Weight (kDa)

8.34

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	15 - 201	3.4e-35	short chain dehydrogenase
adh_short_C2	PF13561	20 - 204	6.8e-21	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	365
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	493
AccB7I	CCANNNNNTGG	1 cut(s)	229
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	3 cut(s)	240, 416, 429
AcoI	YGGCCR	3 cut(s)	99, 432, 555
AcvI	CACGTG	1 cut(s)	490
AcyI	GRCGYC	2 cut(s)	201, 494
AfiI	CCNNNNNNNGG	4 cut(s)	139, 229, 529, 612
AflIII	ACRYGT	2 cut(s)	384, 487
AgsI	TTSAA	1 cut(s)	451
AjiI	CACGTC	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	573
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	6 cut(s)	148, 207, 229, 310, 465, 695
AluI	AGCT	6 cut(s)	148, 207, 229, 310, 465, 695
AlwI	GGATC	3 cut(s)	240, 416, 429
AoxI	GGCC	7 cut(s)	70, 76, 99, 109, 432, 555, 614
ApeKI	GCWGC	3 cut(s)	126, 482, 665
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	2 cut(s)	393, 496
AspS9I	GGNCC	2 cut(s)	42, 614
AsuC2I	CCSGG	4 cut(s)	263, 426, 523, 638
AsuHPI	GGTGA	2 cut(s)	73, 142
AvaII	GGWCC	1 cut(s)	42
AvrII	CCTAGG	1 cut(s)	73
AxyI	CCTNAGG	1 cut(s)	645
BalI	TGGCCA	3 cut(s)	101, 434, 557
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	493
BbrPI	CACGTG	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	113, 494, 652
BccI	CCATC	2 cut(s)	91, 238
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	1 cut(s)	575
BcnI	CCSGG	4 cut(s)	263, 426, 523, 638
BfaI	CTAG	2 cut(s)	74, 80
BfoI	RGCGCY	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	27, 127, 483, 666
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	4 cut(s)	28, 128, 484, 667
Bme1390I	CCNGG	5 cut(s)	263, 426, 523, 575, 638
Bme18I	GGWCC	1 cut(s)	42
BmgBI	CACGTC	1 cut(s)	553
BmgT120I	GGNCC	2 cut(s)	42, 614
BmiI	GGNNCC	5 cut(s)	25, 321, 423, 495, 642
BmrFI	CCNGG	5 cut(s)	263, 426, 523, 575, 638
BmsI	GCATC	4 cut(s)	228, 360, 399, 691
Bpu10I	CCTNAGC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	4 cut(s)	263, 426, 523, 638
BsaAI	YACGTR	1 cut(s)	490
BsaHI	GRCGYC	2 cut(s)	201, 494
BsaJI	CCNNGG	2 cut(s)	73, 574
BsaXI	ACNNNNNCTCC	4 cut(s)	326, 356, 491, 521
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 229, 529, 612
Bse21I	CCTNAGG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	73, 574
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	4 cut(s)	139, 229, 529, 612
BseMII	CTCAG	3 cut(s)	152, 205, 659
BseXI	GCAGC	3 cut(s)	113, 494, 652
BseYI	CCCAGC	2 cut(s)	327, 465
BsgI	GTGCAG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	527
BshFI	GGCC	7 cut(s)	72, 78, 101, 111, 434, 557, 616
BshNI	GGYRCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	527
BsiSI	CCGG	5 cut(s)	263, 285, 426, 523, 638
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	139, 229, 529, 612
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	7 cut(s)	72, 78, 101, 111, 434, 557, 616
Bsp143I	GATC	3 cut(s)	232, 421, 473
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	7 cut(s)	72, 78, 101, 111, 434, 557, 616
BspCNI	CTCAG	3 cut(s)	151, 204, 658
BspLI	GGNNCC	5 cut(s)	25, 321, 423, 495, 642
BspPI	GGATC	3 cut(s)	240, 416, 429
BspT107I	GGYRCC	1 cut(s)	493
BssECI	CCNNGG	2 cut(s)	73, 574
BssMI	GATC	3 cut(s)	232, 421, 473
BssNI	GRCGYC	2 cut(s)	201, 494
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	3 cut(s)	46, 118, 503
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	2 cut(s)	201, 494
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	4 cut(s)	138, 191, 534, 645
BstF5I	GGATG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	2 cut(s)	393, 496
BstKTI	GATC	3 cut(s)	235, 424, 476
BstMBI	GATC	3 cut(s)	232, 421, 473
BstMCI	CGRYCG	1 cut(s)	527
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 563, 662
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	5 cut(s)	261, 424, 521, 573, 636
BstV1I	GCAGC	3 cut(s)	113, 494, 652
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu36I	CCTNAGG	1 cut(s)	645
BsuRI	GGCC	7 cut(s)	72, 78, 101, 111, 434, 557, 616
BtrI	CACGTC	1 cut(s)	553
BtsCI	GGATG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	199, 588
Cac8I	GCNNGC	1 cut(s)	16
CfoI	GCGC	2 cut(s)	393, 496
Cfr13I	GGNCC	2 cut(s)	42, 614
CpoI	CGGWCCG	1 cut(s)	42
CspI	CGGWCCG	1 cut(s)	42
DdeI	CTNAG	4 cut(s)	138, 191, 534, 645
DinI	GGCGCC	1 cut(s)	495
DpnI	GATC	3 cut(s)	234, 423, 475
DpnII	GATC	3 cut(s)	232, 421, 473
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
EaeI	YGGCCR	3 cut(s)	99, 432, 555
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	2 cut(s)	72, 78
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	42
Eco72I	CACGTG	1 cut(s)	490
Eco81I	CCTNAGG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	73
EgeI	GGCGCC	1 cut(s)	495
EheI	GGCGCC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	73
FaiI	YATR	8 cut(s)	272, 313, 446, 455, 563, 584, 596, 626
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	245
Fnu4HI	GCNGC	4 cut(s)	27, 127, 483, 666
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	4 cut(s)	27, 127, 483, 666
FspBI	CTAG	2 cut(s)	74, 80
GlaI	GCGC	2 cut(s)	392, 495
GluI	GCNGC	4 cut(s)	27, 127, 483, 666
GsaI	CCCAGC	2 cut(s)	331, 469
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	7 cut(s)	72, 78, 101, 111, 434, 557, 616
HapII	CCGG	5 cut(s)	263, 285, 426, 523, 638
HhaI	GCGC	2 cut(s)	393, 496
Hin1I	GRCGYC	2 cut(s)	201, 494
Hin6I	GCGC	2 cut(s)	391, 494
HinP1I	GCGC	2 cut(s)	391, 494
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	258, 288, 441
HpaII	CCGG	5 cut(s)	263, 285, 426, 523, 638
HphI	GGTGA	2 cut(s)	73, 142
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	42, 166, 175, 408
Hpy188III	TCNNGA	3 cut(s)	140, 379, 415
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	3 cut(s)	94, 247, 541
HpyCH4III	ACNGT	3 cut(s)	46, 118, 503
HpyCH4IV	ACGT	5 cut(s)	6, 201, 384, 489, 552
HpyCH4V	TGCA	2 cut(s)	482, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 563, 662
HpyF3I	CTNAG	4 cut(s)	138, 191, 534, 645
HpySE526I	ACGT	5 cut(s)	6, 201, 384, 489, 552
Hsp92I	GRCGYC	2 cut(s)	201, 494
HspAI	GCGC	2 cut(s)	391, 494
KasI	GGCGCC	1 cut(s)	493
Kzo9I	GATC	3 cut(s)	232, 421, 473
LmnI	GCTCC	3 cut(s)	23, 134, 640
Lsp1109I	GCAGC	3 cut(s)	113, 494, 652
LweI	GCATC	4 cut(s)	228, 360, 399, 691
MaeI	CTAG	2 cut(s)	74, 80
MaeII	ACGT	5 cut(s)	6, 201, 384, 489, 552
MaeIII	GTNAC	2 cut(s)	376, 632
MalI	GATC	3 cut(s)	234, 423, 475
MboI	GATC	3 cut(s)	232, 421, 473
MboII	GAAGA	3 cut(s)	178, 262, 450
MflI	RGATCY	1 cut(s)	421
MlsI	TGGCCA	3 cut(s)	101, 434, 557
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	3 cut(s)	101, 434, 557
Mly113I	GGCGCC	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	267, 297
MmeI	TCCRAC	3 cut(s)	20, 198, 347
Mox20I	TGGCCA	3 cut(s)	101, 434, 557
MscI	TGGCCA	3 cut(s)	101, 434, 557
MslI	CAYNNNNRTG	2 cut(s)	383, 593
Msp20I	TGGCCA	3 cut(s)	101, 434, 557
MspA1I	CMGCKG	2 cut(s)	465, 695
MspI	CCGG	5 cut(s)	263, 285, 426, 523, 638
MspR9I	CCNGG	5 cut(s)	263, 426, 523, 575, 638
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	491, 563, 662
NarI	GGCGCC	1 cut(s)	494
NciI	CCSGG	4 cut(s)	263, 426, 523, 638
NdeII	GATC	3 cut(s)	232, 421, 473
NlaIV	GGNNCC	5 cut(s)	25, 321, 423, 495, 642
NmuCI	GTSAC	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	383
PceI	AGGCCT	2 cut(s)	72, 78
PfeI	GAWTC	1 cut(s)	441
PflFI	GACNNNGTC	1 cut(s)	523
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	4 cut(s)	28, 128, 484, 667
PleI	GAGTC	2 cut(s)	266, 296
PluTI	GGCGCC	1 cut(s)	497
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	2 cut(s)	266, 296
Ppu21I	YACGTR	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	573
PspCI	CACGTG	1 cut(s)	490
PspFI	CCCAGC	2 cut(s)	327, 465
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	5 cut(s)	25, 321, 423, 495, 642
PspPI	GGNCC	2 cut(s)	42, 614
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	523
PvuII	CAGCTG	2 cut(s)	465, 695
RseI	CAYNNNNRTG	2 cut(s)	383, 593
Rsr2I	CGGWCCG	1 cut(s)	42
RsrII	CGGWCCG	1 cut(s)	42
SatI	GCNGC	4 cut(s)	27, 127, 483, 666
Sau3AI	GATC	3 cut(s)	232, 421, 473
Sau96I	GGNCC	2 cut(s)	42, 614
SchI	GAGTC	2 cut(s)	267, 297
ScrFI	CCNGG	5 cut(s)	263, 426, 523, 575, 638
SfaNI	GCATC	4 cut(s)	228, 360, 399, 691
SfoI	GGCGCC	1 cut(s)	495
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	2 cut(s)	383, 593
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	1 cut(s)	120
SseBI	AGGCCT	2 cut(s)	72, 78
SsiI	CCGC	1 cut(s)	27
SspDI	GGCGCC	1 cut(s)	493
SspMI	CTAG	2 cut(s)	74, 80
StuI	AGGCCT	2 cut(s)	72, 78
StyD4I	CCNGG	5 cut(s)	261, 424, 521, 573, 636
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	3 cut(s)	46, 118, 503
TaiI	ACGT	5 cut(s)	9, 204, 387, 492, 555
TasI	AATT	1 cut(s)	120
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	441
TscAI	CASTG	2 cut(s)	199, 595
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	126, 482, 665
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	17, 388
TspRI	CASTG	2 cut(s)	199, 595
Tth111I	GACNNNGTC	1 cut(s)	523
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmaJI	CCTAGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	74, 80
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.