Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Forward (+)

14528575 .. 14531137

Gene Structure 2563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG142100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAATGGGGTGGCAAGCGAAGGAGCCAATGGCAGTCGAACCGTTTTGATAATGGGGGTGAGCAAAGGGCTAGGCCGAGCGCTCGCCGTAGAGATGCCCAAGAGGGGCCACACCGTAATTGGCTACTCCCATTCTCAGAATAAGCTCACCGCCCTCCAATCCGAACTCTTCTCCTCCTCAGACAAGCACTTCTTCCTTAGCGCCGATGTCCAAGTGGCTTACAAGACAGGCTCGAATCTCCCCAGTTCTGTGGGTTGTGGTGTTTGGGGCTCCCAAATTGTTTTCGCCGGCGGCTTGAAACCCAGCGTCCCTTACGGCATAGGGGCATCCAGATTAGGCCCAGTTGTTTGGCACAGGGATGTTTATTGCTTCGAAACGCAGCAGCAGCAGCTAGAGGACGAGGACGGGGACAATTTAATCAGGAAGATGGATGCTAATTTTACTCTACTGCAAGCCAAATTTAGCCCTTACATTGTGGAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

161

Amino Acids

17.35

Weight (kDa)

6.9

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	14 - 71	2.3e-07	short chain dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	150, 291
AcsI	RAATTY	1 cut(s)	458
AfeI	AGCGCT	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	2 cut(s)	145, 391
AluI	AGCT	2 cut(s)	145, 391
Aor51HI	AGCGCT	1 cut(s)	81
AoxI	GGCC	3 cut(s)	73, 106, 337
ApeKI	GCWGC	4 cut(s)	379, 382, 385, 388
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	82, 203
AspS9I	GGNCC	2 cut(s)	106, 338
AsuHPI	GGTGA	2 cut(s)	70, 139
AsuII	TTCGAA	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	391, 394, 397, 400
BccI	CCATC	1 cut(s)	421
BceAI	ACGGC	2 cut(s)	71, 331
BfaI	CTAG	2 cut(s)	71, 392
BfoI	RGCGCY	2 cut(s)	83, 204
BisI	GCNGC	5 cut(s)	292, 380, 383, 386, 389
BlsI	GCNGC	5 cut(s)	293, 381, 384, 387, 390
BmgT120I	GGNCC	2 cut(s)	106, 338
BmiI	GGNNCC	3 cut(s)	25, 107, 271
BmrI	ACTGGG	2 cut(s)	237, 335
BmsI	GCATC	3 cut(s)	84, 335, 421
BmuI	ACTGGG	2 cut(s)	237, 335
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu14I	TTCGAA	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	2 cut(s)	243, 341
BseGI	GGATG	3 cut(s)	326, 364, 436
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	149, 192
BseNI	ACTGG	2 cut(s)	243, 341
BseRI	GAGGAG	2 cut(s)	163, 166
BseXI	GCAGC	4 cut(s)	391, 394, 397, 400
BseYI	CCCAGC	1 cut(s)	302
BshFI	GGCC	3 cut(s)	75, 108, 339
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	2 cut(s)	293, 422
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	293, 422
BsnI	GGCC	3 cut(s)	75, 108, 339
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	272
BspACI	CCGC	2 cut(s)	150, 291
BspANI	GGCC	3 cut(s)	75, 108, 339
BspCNI	CTCAG	2 cut(s)	148, 191
BspLI	GGNNCC	3 cut(s)	25, 107, 271
BspT104I	TTCGAA	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	243, 341
BssAI	RCCGGY	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	43, 115
Bst6I	CTCTTC	1 cut(s)	173
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	4 cut(s)	16, 84, 289, 453
BstDEI	CTNAG	3 cut(s)	135, 178, 197
BstF5I	GGATG	3 cut(s)	326, 364, 436
BstH2I	RGCGCY	2 cut(s)	83, 204
BstHHI	GCGC	2 cut(s)	82, 203
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 388
BstV1I	GCAGC	4 cut(s)	391, 394, 397, 400
BstXI	CCANNNNNNTGG	2 cut(s)	250, 348
BsuRI	GGCC	3 cut(s)	75, 108, 339
BtsCI	GGATG	3 cut(s)	326, 364, 436
Cac8I	GCNNGC	4 cut(s)	16, 84, 289, 453
CfoI	GCGC	2 cut(s)	82, 203
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	106, 338
CseI	GACGC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	135, 178, 197
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	272
FaiI	YATR	1 cut(s)	320
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	2 cut(s)	293, 422
Fnu4HI	GCNGC	5 cut(s)	292, 380, 383, 386, 389
FokI	GGATG	3 cut(s)	313, 371, 443
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	5 cut(s)	292, 380, 383, 386, 389
FspBI	CTAG	2 cut(s)	71, 392
GlaI	GCGC	2 cut(s)	81, 202
GluI	GCNGC	5 cut(s)	292, 380, 383, 386, 389
GsaI	CCCAGC	1 cut(s)	306
HaeII	RGCGCY	2 cut(s)	83, 204
HaeIII	GGCC	3 cut(s)	75, 108, 339
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	295
HhaI	GCGC	2 cut(s)	82, 203
Hin6I	GCGC	2 cut(s)	80, 201
HinP1I	GCGC	2 cut(s)	80, 201
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	70, 139
Hpy188I	TCNGA	3 cut(s)	138, 163, 181
Hpy188III	TCNNGA	2 cut(s)	330, 421
HpyAV	CCTTC	1 cut(s)	14
HpyCH4III	ACNGT	2 cut(s)	43, 115
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 388
HpyF3I	CTNAG	3 cut(s)	135, 178, 197
HspAI	GCGC	2 cut(s)	80, 201
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	23, 275
LpnPI	CCDG	8 cut(s)	213, 256, 301, 316, 340, 343, 354, 406
Lsp1109I	GCAGC	4 cut(s)	391, 394, 397, 400
LweI	GCATC	3 cut(s)	84, 335, 421
MaeI	CTAG	2 cut(s)	71, 392
MboII	GAAGA	3 cut(s)	160, 184, 436
MhlI	GDGCHC	1 cut(s)	272
MluCI	AATT	5 cut(s)	117, 276, 412, 436, 458
MnlI	CCTC	7 cut(s)	96, 164, 184, 187, 388, 394, 472
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	385, 388
NaeI	GCCGGC	1 cut(s)	289
NgoMIV	GCCGGC	1 cut(s)	287
NlaIV	GGNNCC	3 cut(s)	25, 107, 271
NmeAIII	GCCGAG	1 cut(s)	101
NspV	TTCGAA	1 cut(s)	372
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	5 cut(s)	293, 381, 384, 387, 390
PspFI	CCCAGC	1 cut(s)	302
PspN4I	GGNNCC	3 cut(s)	25, 107, 271
PspPI	GGNCC	2 cut(s)	106, 338
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	416
SatI	GCNGC	5 cut(s)	292, 380, 383, 386, 389
Sau96I	GGNCC	2 cut(s)	106, 338
SduI	GDGCHC	1 cut(s)	272
SetI	ASST	3 cut(s)	147, 393, 483
SfaNI	GCATC	3 cut(s)	84, 335, 421
SfuI	TTCGAA	1 cut(s)	372
SgrAI	CRCCGGYG	1 cut(s)	287
SmiMI	CAYNNNNRTG	1 cut(s)	357
Sse9I	AATT	5 cut(s)	117, 276, 412, 436, 458
SsiI	CCGC	2 cut(s)	150, 291
SspMI	CTAG	2 cut(s)	71, 392
TaaI	ACNGT	2 cut(s)	43, 115
TaqI	TCGA	3 cut(s)	37, 233, 372
TasI	AATT	5 cut(s)	117, 276, 412, 436, 458
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	416
Tru9I	TTAA	1 cut(s)	416
TseI	GCWGC	4 cut(s)	379, 382, 385, 388
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	2 cut(s)	71, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.