Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023628.1

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 794

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023628.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 700 bp

cgccaatggcagtcggaccgttttgataacgggggtgagcaaaggcctaggccgagccctcgccgttgagatggccaagaggggccacaccgtaatcggctgctcccgttctcaggataagctcacctccctccaatccgaactctccgacaagcacctcttcctcagcgccgacgtgagctcgaatagcagcgtccaagagctggctcgggttgtgatggagaagaagggagtcccggatatcatagtaaacaatgccggagtcatcaacaacaacaacaagctctgggaggttccggccgaggagttcgacagcgtcgtcgacaccaatgtcaagggggtcgccaacgtgttgcgccacttcattcctctgatgctcaagagggatcccgctccggccaccggaatcatagtcaacatgtcttctggctggggcagatccggtgccgcacacgtggcgccttactgtgcctccaaatgggccgtggagggtttgacccggtcggtggccaaggagttgccaaaggacatggccactgtggctctcaatcccggggttatacacactgatatgcttgtttcctgctttgggccgcagaatatggatagttacccggagccccgggtttgggccgtcaaggctgctacgatgatattgcatcttacaccagctgacaatggtgcttctctcactgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

232

Amino Acids

24.71

Weight (kDa)

8.48

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	318, 330
AccB1I	GGYRCC	2 cut(s)	444, 458
AccB7I	CCANNNNNTGG	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	322
AciI	CCGC	3 cut(s)	391, 448, 594
AclWI	GGATC	3 cut(s)	381, 394, 433
AcoI	YGGCCR	5 cut(s)	73, 298, 397, 508, 532
AcvI	CACGTG	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	459
AfiI	CCNNNNNNNGG	8 cut(s)	113, 203, 402, 478, 506, 589, 628, 629
AflIII	ACRYGT	3 cut(s)	349, 418, 452
AjiI	CACGTC	1 cut(s)	176
AluBI	AGCT	5 cut(s)	122, 181, 203, 284, 672
AluI	AGCT	5 cut(s)	122, 181, 203, 284, 672
Alw21I	GWGCWC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	381, 394, 433
Ama87I	CYCGRG	3 cut(s)	208, 552, 622
ApeKI	GCWGC	3 cut(s)	100, 190, 642
AspA2I	CCTAGG	1 cut(s)	47
AspLEI	GCGC	3 cut(s)	171, 358, 461
AspS9I	GGNCC	5 cut(s)	16, 83, 481, 591, 631
AsuC2I	CCSGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
AsuHPI	GGTGA	2 cut(s)	47, 116
AvaI	CYCGRG	3 cut(s)	208, 552, 622
AvaII	GGWCC	1 cut(s)	16
AvrII	CCTAGG	1 cut(s)	47
BalI	TGGCCA	3 cut(s)	75, 510, 534
BamHI	GGATCC	1 cut(s)	386
BanI	GGYRCC	2 cut(s)	444, 458
BanII	GRGCYC	3 cut(s)	59, 183, 622
BbrPI	CACGTG	1 cut(s)	455
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	87, 202, 629
BccI	CCATC	2 cut(s)	65, 212
BceAI	ACGGC	3 cut(s)	48, 468, 618
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BcnI	CCSGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
BfaI	CTAG	1 cut(s)	48
BfoI	RGCGCY	2 cut(s)	172, 462
BglI	GCCNNNNNGGC	2 cut(s)	540, 639
BisI	GCNGC	5 cut(s)	101, 191, 448, 594, 643
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	5 cut(s)	102, 192, 449, 595, 644
Bme1390I	CCNGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
Bme18I	GGWCC	1 cut(s)	16
BmeT110I	CYCGRG	3 cut(s)	208, 552, 622
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	5 cut(s)	16, 83, 481, 591, 631
BmiI	GGNNCC	6 cut(s)	84, 295, 388, 446, 460, 619
BmrFI	CCNGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
BmsI	GCATC	2 cut(s)	364, 668
BpiI	GAAGAC	1 cut(s)	415
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	363
BpuMI	CCSGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	459
BsaJI	CCNNGG	8 cut(s)	47, 301, 484, 511, 552, 553, 621, 622
BsaWI	WCCGGW	2 cut(s)	402, 441
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	8 cut(s)	113, 203, 402, 478, 506, 589, 628, 629
BseDI	CCNNGG	8 cut(s)	47, 301, 484, 511, 552, 553, 621, 622
BseLI	CCNNNNNNNGG	8 cut(s)	113, 203, 402, 478, 506, 589, 628, 629
BseMII	CTCAG	2 cut(s)	126, 179
BseRI	GAGGAG	1 cut(s)	318
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	87, 202, 629
BseYI	CCCAGC	1 cut(s)	430
Bsh1285I	CGRYCG	2 cut(s)	301, 504
BshNI	GGYRCC	2 cut(s)	444, 458
BsiEI	CGRYCG	2 cut(s)	301, 504
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	3 cut(s)	208, 552, 622
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	8 cut(s)	113, 203, 402, 478, 506, 589, 628, 629
BsmFI	GGGAC	1 cut(s)	219
BsoBI	CYCGRG	3 cut(s)	208, 552, 622
Bsp1286I	GDGCHC	3 cut(s)	59, 183, 622
Bsp143I	GATC	2 cut(s)	386, 438
BspACI	CCGC	3 cut(s)	391, 448, 594
BspCNI	CTCAG	2 cut(s)	125, 178
BspLI	GGNNCC	6 cut(s)	84, 295, 388, 446, 460, 619
BspPI	GGATC	3 cut(s)	381, 394, 433
BspT107I	GGYRCC	2 cut(s)	444, 458
BsrBI	CCGCTC	1 cut(s)	393
BssECI	CCNNGG	8 cut(s)	47, 301, 484, 511, 552, 553, 621, 622
BssMI	GATC	2 cut(s)	386, 438
BssNI	GRCGYC	1 cut(s)	459
BssT1I	CCWWGG	2 cut(s)	47, 511
Bst4CI	ACNGT	5 cut(s)	20, 92, 468, 539, 695
Bst6I	CTCTTC	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	459
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	112, 165
BstDSI	CCRYGG	1 cut(s)	484
BstH2I	RGCGCY	2 cut(s)	172, 462
BstHHI	GCGC	3 cut(s)	171, 358, 461
BstKTI	GATC	2 cut(s)	389, 441
BstMBI	GATC	2 cut(s)	386, 438
BstMCI	CGRYCG	2 cut(s)	301, 504
BstMWI	GCNNNNNNNGC	4 cut(s)	187, 456, 540, 639
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	7 cut(s)	235, 498, 551, 552, 613, 621, 622
BstV1I	GCAGC	3 cut(s)	87, 202, 629
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	2 cut(s)	386, 438
BstYI	RGATCY	2 cut(s)	386, 438
BstZI	CGGCCG	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	176
BtsIMutI	CAGTG	3 cut(s)	535, 565, 691
Cac8I	GCNNGC	1 cut(s)	205
CfoI	GCGC	3 cut(s)	171, 358, 461
Cfr13I	GGNCC	5 cut(s)	16, 83, 481, 591, 631
Cfr9I	CCCGGG	2 cut(s)	552, 622
CpoI	CGGWCCG	1 cut(s)	16
CseI	GACGC	2 cut(s)	182, 305
CspI	CGGWCCG	1 cut(s)	16
CviAII	CATG	2 cut(s)	419, 530
DdeI	CTNAG	2 cut(s)	112, 165
DinI	GGCGCC	1 cut(s)	460
DpnI	GATC	2 cut(s)	388, 440
DpnII	GATC	2 cut(s)	386, 438
DrdI	GACNNNNNNGTC	2 cut(s)	318, 330
DseDI	GACNNNNNNGTC	2 cut(s)	318, 330
EaeI	YGGCCR	5 cut(s)	73, 298, 397, 508, 532
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	47, 511
Eco147I	AGGCCT	1 cut(s)	46
Eco24I	GRGCYC	3 cut(s)	59, 183, 622
Eco32I	GATATC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	455
Eco88I	CYCGRG	3 cut(s)	208, 552, 622
EcoICRI	GAGCTC	1 cut(s)	181
EcoRV	GATATC	1 cut(s)	242
EcoT14I	CCWWGG	2 cut(s)	47, 511
EcoT38I	GRGCYC	3 cut(s)	59, 183, 622
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
ErhI	CCWWGG	2 cut(s)	47, 511
FaeI	CATG	2 cut(s)	422, 533
FaiI	YATR	7 cut(s)	246, 411, 420, 531, 561, 573, 603
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	418, 529
FauI	CCCGC	1 cut(s)	398
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	101, 191, 448, 594, 643
FriOI	GRGCYC	3 cut(s)	59, 183, 622
Fsp4HI	GCNGC	5 cut(s)	101, 191, 448, 594, 643
FspBI	CTAG	1 cut(s)	48
GlaI	GCGC	3 cut(s)	170, 357, 460
GluI	GCNGC	5 cut(s)	101, 191, 448, 594, 643
GsaI	CCCAGC	1 cut(s)	434
HaeII	RGCGCY	2 cut(s)	172, 462
HgaI	GACGC	2 cut(s)	182, 305
HhaI	GCGC	3 cut(s)	171, 358, 461
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	422, 533
Hin6I	GCGC	3 cut(s)	169, 356, 459
HinP1I	GCGC	3 cut(s)	169, 356, 459
HincII	GTYRAC	2 cut(s)	323, 416
HindII	GTYRAC	2 cut(s)	323, 416
HinfI	GANTC	3 cut(s)	232, 262, 406
HphI	GGTGA	2 cut(s)	47, 116
Hpy166II	GTNNAC	3 cut(s)	251, 323, 416
Hpy188I	TCNGA	5 cut(s)	16, 140, 149, 373, 699
Hpy188III	TCNNGA	2 cut(s)	114, 380
Hpy8I	GTNNAC	3 cut(s)	251, 323, 416
Hpy99I	CGWCG	3 cut(s)	177, 321, 324
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	5 cut(s)	20, 92, 468, 539, 695
HpyCH4IV	ACGT	3 cut(s)	175, 349, 454
HpyCH4V	TGCA	1 cut(s)	659
HpyF10VI	GCNNNNNNNGC	4 cut(s)	187, 456, 540, 639
HpyF3I	CTNAG	2 cut(s)	112, 165
HpySE526I	ACGT	3 cut(s)	175, 349, 454
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	422, 533
HspAI	GCGC	3 cut(s)	169, 356, 459
KasI	GGCGCC	1 cut(s)	458
Kzo9I	GATC	2 cut(s)	386, 438
LmnI	GCTCC	3 cut(s)	108, 398, 617
Lsp1109I	GCAGC	3 cut(s)	87, 202, 629
LweI	GCATC	2 cut(s)	364, 668
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	3 cut(s)	175, 349, 454
MaeIII	GTNAC	1 cut(s)	609
MalI	GATC	2 cut(s)	388, 440
MbiI	CCGCTC	1 cut(s)	393
MboI	GATC	2 cut(s)	386, 438
MboII	GAAGA	3 cut(s)	152, 236, 415
MflI	RGATCY	2 cut(s)	386, 438
MhlI	GDGCHC	3 cut(s)	59, 183, 622
MlsI	TGGCCA	3 cut(s)	75, 510, 534
MluNI	TGGCCA	3 cut(s)	75, 510, 534
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	2 cut(s)	241, 271
MmeI	TCCRAC	1 cut(s)	172
Mox20I	TGGCCA	3 cut(s)	75, 510, 534
MscI	TGGCCA	3 cut(s)	75, 510, 534
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	3 cut(s)	75, 510, 534
MspA1I	CMGCKG	1 cut(s)	672
MspR9I	CCNGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
MwoI	GCNNNNNNNGC	4 cut(s)	187, 456, 540, 639
NarI	GGCGCC	1 cut(s)	459
NciI	CCSGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
NdeII	GATC	2 cut(s)	386, 438
NlaIII	CATG	2 cut(s)	422, 533
NlaIV	GGNNCC	6 cut(s)	84, 295, 388, 446, 460, 619
NmeAIII	GCCGAG	2 cut(s)	78, 326
NspI	RCATGY	1 cut(s)	422
PceI	AGGCCT	1 cut(s)	46
PciI	ACATGT	1 cut(s)	418
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	406
PflFI	GACNNNGTC	2 cut(s)	315, 500
PflMI	CCANNNNNTGG	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	235
PkrI	GCNGC	5 cut(s)	102, 192, 449, 595, 644
PleI	GAGTC	2 cut(s)	240, 270
PluTI	GGCGCC	1 cut(s)	462
PmaCI	CACGTG	1 cut(s)	455
PmlI	CACGTG	1 cut(s)	455
PpsI	GAGTC	2 cut(s)	240, 270
Ppu21I	YACGTR	1 cut(s)	455
PscI	ACATGT	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	183
PspCI	CACGTG	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	430
PspN4I	GGNNCC	6 cut(s)	84, 295, 388, 446, 460, 619
PspPI	GGNCC	5 cut(s)	16, 83, 481, 591, 631
PsuI	RGATCY	2 cut(s)	386, 438
PsyI	GACNNNGTC	2 cut(s)	315, 500
PvuII	CAGCTG	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	570
Rsr2I	CGGWCCG	1 cut(s)	16
RsrII	CGGWCCG	1 cut(s)	16
SacI	GAGCTC	1 cut(s)	183
SalI	GTCGAC	1 cut(s)	321
SatI	GCNGC	5 cut(s)	101, 191, 448, 594, 643
Sau3AI	GATC	2 cut(s)	386, 438
Sau96I	GGNCC	5 cut(s)	16, 83, 481, 591, 631
SchI	GAGTC	2 cut(s)	241, 271
ScrFI	CCNGG	7 cut(s)	237, 500, 553, 554, 615, 623, 624
SduI	GDGCHC	3 cut(s)	59, 183, 622
SfaNI	GCATC	2 cut(s)	364, 668
SfoI	GGCGCC	1 cut(s)	460
SinI	GGWCC	1 cut(s)	16
SmaI	CCCGGG	2 cut(s)	554, 624
SmiMI	CAYNNNNRTG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	3 cut(s)	391, 448, 594
SspDI	GGCGCC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	48
SstI	GAGCTC	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	7 cut(s)	235, 498, 551, 552, 613, 621, 622
StyI	CCWWGG	2 cut(s)	47, 511
TaaI	ACNGT	5 cut(s)	20, 92, 468, 539, 695
TaiI	ACGT	3 cut(s)	178, 352, 457
TaqI	TCGA	3 cut(s)	183, 310, 322
TauI	GCSGC	2 cut(s)	450, 596
TfiI	GAWTC	1 cut(s)	406
TscAI	CASTG	3 cut(s)	542, 572, 698
TseI	GCWGC	3 cut(s)	100, 190, 642
TspDTI	ATGAA	1 cut(s)	353
TspMI	CCCGGG	2 cut(s)	552, 622
TspRI	CASTG	3 cut(s)	542, 572, 698
Tth111I	GACNNNGTC	2 cut(s)	315, 500
Van91I	CCANNNNNTGG	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	16
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	482
XmaI	CCCGGG	2 cut(s)	552, 622
XmaJI	CCTAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.