Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001565.1

Orthogroup ID

OG0010491

Physical Location & Seq

Genomic Coordinates Reverse (-)

11846 .. 12109

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001565.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

atgaacgtggtggcaagcaaagaagccgccaatggcagtcagactgttgtgataacgggggtgagcaaaggcctaggccgagccctcaccctagagatggccaagagaggccacaccgtaatcggctgctcccgttctcaggataagttcaccttcctccaatccaaactctccgacaagcacatcttcctcaacgccgacgtcgttcgtactctctctctctattctttcctcatcaaaattttccttcaatttcaatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004312 GO:0004316 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006575 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030497 GO:0032787 GO:0034641 GO:0036094 GO:0042558 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048037 GO:0050661 GO:0050662 GO:0051186 GO:0055114 GO:0071704 GO:0072330 GO:0097159 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short

Protein Analysis

87

Amino Acids

9.55

Weight (kDa)

10.01

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10310
fragaria_vesca	FvH4_5g27970
malus_domestica	MD08G1247500.v1.1
prunus_persica	Prupe.1G584900_v2.0.a1
pyrus_communis	pycom08g21440
rosa_chinensis	RchiOBHm_Chr7g0220131 RchiOBHm_Chr7g0220301
rosa_laevigata	RLG00000002254
rosa_multiflora	Rmu_sc0001136.1_g000033 Rmu_sc0001565.1_g000004 Rmu_sc0006361.1_g000021 Rmu_sc0023628.1_g000001
rosa_roxburghii	Rroxscaffold_3G00239760
rosa_rugosa	Rorug07G0189800 Rorug07G0192100
rosa_samantha	Rh5DG142100 Rh7AG332700 Rh7BG323000 Rh7CG350200 Rh7DG328800
rosa_wichuraiana	Rw7G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	99
AcsI	RAATTY	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	97, 139
AgsI	TTSAA	2 cut(s)	251, 257
AoxI	GGCC	4 cut(s)	70, 76, 99, 109
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	1 cut(s)	240
AspA2I	CCTAGG	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	73, 79, 142
AvrII	CCTAGG	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	1 cut(s)	91
BfaI	CTAG	2 cut(s)	74, 92
BisI	GCNGC	2 cut(s)	27, 127
BlnI	CCTAGG	1 cut(s)	73
BlsI	GCNGC	2 cut(s)	28, 128
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 139
BseDI	CCNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	97, 139
BseMII	CTCAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	4 cut(s)	72, 78, 101, 111
BslI	CCNNNNNNNGG	2 cut(s)	97, 139
BsnI	GGCC	4 cut(s)	72, 78, 101, 111
Bsp1286I	GDGCHC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	4 cut(s)	72, 78, 101, 111
BspCNI	CTCAG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	73
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	1 cut(s)	73
Bst4CI	ACNGT	2 cut(s)	46, 118
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	4 cut(s)	72, 78, 101, 111
Cac8I	GCNNGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	210
CviJI	RGCY	7 cut(s)	26, 72, 78, 83, 101, 111, 126
CviKI_1	RGCY	7 cut(s)	26, 72, 78, 83, 101, 111, 126
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	138
EaeI	YGGCCR	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	73
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 170, 202
Fnu4HI	GCNGC	2 cut(s)	27, 127
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	2 cut(s)	27, 127
FspBI	CTAG	2 cut(s)	74, 92
GluI	GCNGC	2 cut(s)	27, 127
HaeIII	GGCC	4 cut(s)	72, 78, 101, 111
Hin1I	GRCGYC	1 cut(s)	201
HphI	GGTGA	3 cut(s)	73, 79, 142
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	2 cut(s)	42, 175
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	2 cut(s)	203, 206
HpyAV	CCTTC	2 cut(s)	163, 257
HpyCH4III	ACNGT	2 cut(s)	46, 118
HpyCH4IV	ACGT	2 cut(s)	6, 201
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	2 cut(s)	6, 201
Hsp92I	GRCGYC	1 cut(s)	201
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	113
MaeI	CTAG	2 cut(s)	74, 92
MaeII	ACGT	2 cut(s)	6, 201
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	101
MluCI	AATT	2 cut(s)	240, 251
MluNI	TGGCCA	1 cut(s)	101
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	5 cut(s)	95, 101, 167, 200, 242
Mox20I	TGGCCA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	101
MseI	TTAA	1 cut(s)	262
Msp20I	TGGCCA	1 cut(s)	101
NmeAIII	GCCGAG	1 cut(s)	104
PceI	AGGCCT	1 cut(s)	72
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	28, 128
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	2 cut(s)	27, 127
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	3 cut(s)	9, 155, 204
Sse9I	AATT	2 cut(s)	240, 251
SseBI	AGGCCT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	2 cut(s)	74, 92
StuI	AGGCCT	1 cut(s)	72
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	46, 118
TaiI	ACGT	2 cut(s)	9, 204
TasI	AATT	2 cut(s)	240, 251
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	240
XmaJI	CCTAGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	74, 92
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.