FvH4_5g28210

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004588
Physical Location & Seq
Forward (+)
19393947 .. 19402584
8638 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28210.t1

Sequence Viewer

Length: 1194 bp
ATGCTTCTCAAAGGTGCTACCATGGTCAATCCTGTGTCTGTACTGTCAGATCCAAAGAATAGATCATTCTACTGCAGTCTCTTCATTGTAGTTTCATTGGTTACCGGTGCTTATTTCATTGGTGGTGCGTCCATTGCTAAGGAGTACAAGGAAAAATTAACTAGATGGAAGGTTACCTACACTATGCAGAATACAAATCTTGATACCTGCAAGAAACGGTGCCAGCCATCAGGGACTGAGGCATTACCAGAAGGAATTGTTGCCAAAACATCGGACTTCAAAATCCGGCCTTTATGGGGCACCTCAAAGAAAGATAAAAACTCAACGCCTTCAAAGAGCTTGCTGGCCATTGCAGTTGGAATAAAACAGAAAGAAATAGTGGACAAAATTGTTCGGAAGTTTTTATCAAGTGATTTCGTGGTAATGCTTTTCCATTATGATGGTGCTGTGGATAAGTGGAGGGATTTACATTGGAGTGATACTGCCATTCATGTGTCTGTGATGAACCAAACAAAATGGTGGTTCGCAAAACGTTTCTTGCATCCAGATATAGTGACTGAATATAAACATATTTTTCTCTGGGATGAGGACCTTGGAGTTGAGAATTTTGATCCAGAACGATATCTATCAGTTATTTGGGATGAGGGACTTGAAATATCACAGCCAGCACTTGATCCTGTCAAATCGGAGGTGTATCATCCAATCACTGCACGTGTAAAGAAATCAAAAGTGCACAGAAGGTTTTATAAGTTCAAAGGCAGCGGAAGGTGTGACGATCAAAGCTCTGGTCCTCCATGTATAGGTTGGGTGGAAATGATGGCACCTGTATTCTCAAGAGCGGCTTGGCGATGTGTATGGTACATGATTCAGAACGACTTGGTCCATGCATGGGGATTGGATGAGCAACTTGGTTATTGCGCACAAGGCGATCGAATGAAAAATGTTGGCGTAGTTGACTCGGAATATATAGTTCATCTTGGTCTTCCTACACTTGGTGTCACAGATGACAATAAGGGTATCAATAACATGGTTCACTCTCAGAAAGAGGACTCAAAAGCATTGGCACCATCTGGCCCTCCTATACCCAGTGATAGAGCTAAAGTTAGGATGCAGTCCTTCATTGACATGCGGATCTTTAAGGAAAGATGGAGGAGTGCAGTGAAGGAGGATAACTGTTGGGTTGACCCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

398

Amino Acids

45.39

Weight (kDa)

8.89

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 74 - 389 9e-144 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
Acc16I TGCGCA 1 cut(s) 919
Acc36I ACCTGC 1 cut(s) 215
AccB1I GGYRCC 4 cut(s) 219, 299, 820, 1063
AccBSI CCGCTC 1 cut(s) 839
AciI CCGC 3 cut(s) 762, 839, 1129
AclI AACGTT 1 cut(s) 532
AclWI GGATC 4 cut(s) 44, 605, 668, 1139
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 604
AcvI CACGTG 1 cut(s) 713
AdeI CACNNNGTG 1 cut(s) 995
AfaI GTAC 3 cut(s) 42, 146, 860
AfiI CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
AflIII ACRYGT 1 cut(s) 712
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 4 cut(s) 280, 333, 653, 754
AluBI AGCT 3 cut(s) 339, 783, 1097
AluI AGCT 3 cut(s) 339, 783, 1097
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 1 cut(s) 83
Alw44I GTGCAC 1 cut(s) 731
AlwI GGATC 4 cut(s) 44, 605, 668, 1139
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 3 cut(s) 287, 345, 1072
ApaLI GTGCAC 1 cut(s) 731
ApeKI GCWGC 1 cut(s) 759
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 2 cut(s) 772, 804
AsiGI ACCGGT 1 cut(s) 104
AspLEI GCGC 1 cut(s) 920
AspS9I GGNCC 4 cut(s) 589, 788, 880, 1073
AvaII GGWCC 3 cut(s) 589, 788, 880
BaeGI GKGCMC 2 cut(s) 302, 735
BalI TGGCCA 1 cut(s) 347
BanI GGYRCC 4 cut(s) 219, 299, 820, 1063
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 1 cut(s) 771
BccI CCATC 6 cut(s) 159, 235, 434, 811, 1075, 1140
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 73
BfuAI ACCTGC 1 cut(s) 215
BisI GCNGC 2 cut(s) 760, 840
BlsI GCNGC 2 cut(s) 761, 841
Bme18I GGWCC 3 cut(s) 589, 788, 880
BmgT120I GGNCC 4 cut(s) 589, 788, 880, 1073
BmiI GGNNCC 4 cut(s) 221, 301, 822, 1065
BmrI ACTGGG 1 cut(s) 1080
BmsI GCATC 2 cut(s) 550, 1098
BmuI ACTGGG 1 cut(s) 1080
BpiI GAAGAC 1 cut(s) 974
Bpu10I CCTNAGC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 817
BsaAI YACGTR 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 625
BsaJI CCNNGG 2 cut(s) 21, 592
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 1 cut(s) 1086
Bse3DI GCAATG 2 cut(s) 132, 348
Bse8I GATNNNNATC 1 cut(s) 625
BseDI CCNNGG 2 cut(s) 21, 592
BseGI GGATG 6 cut(s) 541, 589, 646, 697, 904, 1113
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
BseMI GCAATG 2 cut(s) 132, 348
BseMII CTCAG 2 cut(s) 228, 1052
BseNI ACTGG 1 cut(s) 1086
BseRI GAGGAG 1 cut(s) 1165
BseSI GKGCMC 2 cut(s) 302, 735
BseXI GCAGC 1 cut(s) 771
BsgI GTGCAG 2 cut(s) 693, 1176
Bsh1285I CGRYCG 1 cut(s) 931
BshFI GGCC 3 cut(s) 289, 347, 1074
BshNI GGYRCC 4 cut(s) 219, 299, 820, 1063
BshTI ACCGGT 1 cut(s) 104
BsiEI CGRYCG 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 2 cut(s) 105, 286
BslFI GGGAC 2 cut(s) 247, 660
BslI CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 2 cut(s) 247, 660
BsnI GGCC 3 cut(s) 289, 347, 1074
Bsp1286I GDGCHC 2 cut(s) 302, 735
Bsp143I GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 762, 839, 1129
BspANI GGCC 3 cut(s) 289, 347, 1074
BspCNI CTCAG 2 cut(s) 229, 1051
BspLI GGNNCC 4 cut(s) 221, 301, 822, 1065
BspMAI CTGCAG 1 cut(s) 77
BspMI ACCTGC 1 cut(s) 215
BspPI GGATC 4 cut(s) 44, 605, 668, 1139
BspT107I GGYRCC 4 cut(s) 219, 299, 820, 1063
BsrBI CCGCTC 1 cut(s) 839
BsrDI GCAATG 2 cut(s) 132, 348
BsrFI RCCGGY 1 cut(s) 104
BsrI ACTGG 1 cut(s) 1086
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 2 cut(s) 21, 592
BssMI GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
BssT1I CCWWGG 2 cut(s) 21, 592
Bst4CI ACNGT 3 cut(s) 45, 219, 1175
Bst6I CTCTTC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 224, 341, 345, 666
BstDEI CTNAG 3 cut(s) 138, 237, 1038
BstDSI CCRYGG 1 cut(s) 21
BstEII GGTNACC 2 cut(s) 100, 172
BstF5I GGATG 6 cut(s) 541, 589, 646, 697, 904, 1113
BstHHI GCGC 1 cut(s) 920
BstKTI GATC 7 cut(s) 52, 65, 613, 676, 778, 931, 1134
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
BstMCI CGRYCG 1 cut(s) 931
BstMWI GCNNNNNNNGC 2 cut(s) 134, 924
BstNSI RCATGY 1 cut(s) 1129
BstPI GGTNACC 2 cut(s) 100, 172
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 2 cut(s) 302, 735
BstV1I GCAGC 1 cut(s) 771
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 2 cut(s) 49, 1131
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 2 cut(s) 49, 1131
BsuRI GGCC 3 cut(s) 289, 347, 1074
BtgI CCRYGG 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 6 cut(s) 541, 589, 646, 697, 904, 1113
BtsI GCAGTG 2 cut(s) 705, 1164
BtsIMutI CAGTG 3 cut(s) 705, 1093, 1164
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 4 cut(s) 224, 341, 345, 666
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 1 cut(s) 920
Cfr10I RCCGGY 1 cut(s) 104
Cfr13I GGNCC 4 cut(s) 589, 788, 880, 1073
CseI GACGC 1 cut(s) 117
Csp6I GTAC 3 cut(s) 41, 145, 859
CspAI ACCGGT 1 cut(s) 104
CviAII CATG 8 cut(s) 22, 491, 795, 862, 884, 888, 1027, 1126
CviJI RGCY 9 cut(s) 226, 289, 339, 347, 664, 783, 842, 1074, 1097
CviKI_1 RGCY 9 cut(s) 226, 289, 339, 347, 664, 783, 842, 1074, 1097
CviQI GTAC 3 cut(s) 41, 145, 859
DdeI CTNAG 3 cut(s) 138, 237, 1038
DpnI GATC 7 cut(s) 51, 64, 612, 675, 777, 930, 1133
DpnII GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
DraIII CACNNNGTG 1 cut(s) 995
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 2 cut(s) 21, 592
Eco32I GATATC 1 cut(s) 623
Eco47I GGWCC 3 cut(s) 589, 788, 880
Eco72I CACGTG 1 cut(s) 713
Eco91I GGTNACC 2 cut(s) 100, 172
EcoO109I RGGNCCY 1 cut(s) 589
EcoO65I GGTNACC 2 cut(s) 100, 172
EcoRV GATATC 1 cut(s) 623
EcoT14I CCWWGG 2 cut(s) 21, 592
EcoT22I ATGCAT 1 cut(s) 889
ErhI CCWWGG 2 cut(s) 21, 592
FaeI CATG 8 cut(s) 25, 494, 798, 865, 887, 891, 1030, 1129
FalI AAGNNNNNCTT 2 cut(s) 826, 858
FaqI GGGAC 2 cut(s) 247, 660
FatI CATG 8 cut(s) 21, 490, 794, 861, 883, 887, 1026, 1125
Fnu4HI GCNGC 2 cut(s) 760, 840
FokI GGATG 6 cut(s) 528, 596, 653, 684, 911, 1120
Fsp4HI GCNGC 2 cut(s) 760, 840
FspBI CTAG 1 cut(s) 162
FspI TGCGCA 1 cut(s) 919
GlaI GCGC 1 cut(s) 919
GluI GCNGC 2 cut(s) 760, 840
HaeIII GGCC 3 cut(s) 289, 347, 1074
HapII CCGG 2 cut(s) 105, 286
HgaI GACGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 920
Hin1II CATG 8 cut(s) 25, 494, 798, 865, 887, 891, 1030, 1129
Hin6I GCGC 1 cut(s) 918
HinP1I GCGC 1 cut(s) 918
HincII GTYRAC 2 cut(s) 955, 1183
HindII GTYRAC 2 cut(s) 955, 1183
HinfI GANTC 3 cut(s) 865, 956, 1049
HpaII CCGG 2 cut(s) 105, 286
Hpy166II GTNNAC 5 cut(s) 382, 733, 955, 1033, 1183
Hpy188I TCNGA 7 cut(s) 49, 274, 396, 688, 870, 961, 1041
Hpy188III TCNNGA 4 cut(s) 200, 545, 614, 834
Hpy8I GTNNAC 5 cut(s) 382, 733, 955, 1033, 1183
HpyAV CCTTC 7 cut(s) 163, 245, 339, 732, 759, 1126, 1156
HpyCH4III ACNGT 3 cut(s) 45, 219, 1175
HpyCH4IV ACGT 2 cut(s) 532, 712
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 924
HpyF3I CTNAG 3 cut(s) 138, 237, 1038
HpySE526I ACGT 2 cut(s) 532, 712
Hsp92II CATG 8 cut(s) 25, 494, 798, 865, 887, 891, 1030, 1129
HspAI GCGC 1 cut(s) 918
Kzo9I GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
Lsp1109I GCAGC 1 cut(s) 771
LweI GCATC 2 cut(s) 550, 1098
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 532, 712
MaeIII GTNAC 5 cut(s) 100, 172, 553, 770, 997
MalI GATC 7 cut(s) 51, 64, 612, 675, 777, 930, 1133
MbiI CCGCTC 1 cut(s) 839
MboI GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
MboII GAAGA 2 cut(s) 73, 974
MflI RGATCY 2 cut(s) 49, 1131
MhlI GDGCHC 2 cut(s) 302, 735
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 4 cut(s) 155, 255, 387, 604
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 2 cut(s) 950, 1043
MmeI TCCRAC 1 cut(s) 337
Mox20I TGGCCA 1 cut(s) 347
Mph1103I ATGCAT 1 cut(s) 889
MscI TGGCCA 1 cut(s) 347
MseI TTAA 2 cut(s) 158, 1137
MslI CAYNNNNRTG 4 cut(s) 438, 474, 491, 1124
Msp20I TGGCCA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 762
MspI CCGG 2 cut(s) 105, 286
MwoI GCNNNNNNNGC 2 cut(s) 134, 924
NcoI CCATGG 1 cut(s) 21
NdeII GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
NlaIII CATG 8 cut(s) 25, 494, 798, 865, 887, 891, 1030, 1129
NlaIV GGNNCC 4 cut(s) 221, 301, 822, 1065
NmuCI GTSAC 3 cut(s) 553, 770, 997
NsbI TGCGCA 1 cut(s) 919
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 1 cut(s) 1129
PfeI GAWTC 1 cut(s) 865
PflFI GACNNNGTC 1 cut(s) 878
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 2 cut(s) 761, 841
Ple19I CGATCG 1 cut(s) 931
PleI GAGTC 2 cut(s) 950, 1043
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 2 cut(s) 950, 1043
Ppu21I YACGTR 1 cut(s) 713
PpuMI RGGWCCY 1 cut(s) 589
PsiI TTATAA 1 cut(s) 747
Psp1406I AACGTT 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 589
PspCI CACGTG 1 cut(s) 713
PspEI GGTNACC 2 cut(s) 100, 172
PspN4I GGNNCC 4 cut(s) 221, 301, 822, 1065
PspPI GGNCC 4 cut(s) 589, 788, 880, 1073
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 2 cut(s) 49, 1131
PsyI GACNNNGTC 1 cut(s) 878
PvuI CGATCG 1 cut(s) 931
RsaI GTAC 3 cut(s) 42, 146, 860
RsaNI GTAC 3 cut(s) 41, 145, 859
RseI CAYNNNNRTG 4 cut(s) 438, 474, 491, 1124
SaqAI TTAA 2 cut(s) 158, 1137
SatI GCNGC 2 cut(s) 760, 840
Sau3AI GATC 7 cut(s) 49, 62, 610, 673, 775, 928, 1131
Sau96I GGNCC 4 cut(s) 589, 788, 880, 1073
SchI GAGTC 2 cut(s) 950, 1043
SduI GDGCHC 2 cut(s) 302, 735
SfaNI GCATC 2 cut(s) 550, 1098
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 3 cut(s) 589, 788, 880
SmiMI CAYNNNNRTG 4 cut(s) 438, 474, 491, 1124
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 4 cut(s) 155, 255, 387, 604
SsiI CCGC 3 cut(s) 762, 839, 1129
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 2 cut(s) 21, 592
TaaI ACNGT 3 cut(s) 45, 219, 1175
TaiI ACGT 2 cut(s) 535, 715
TaqI TCGA 1 cut(s) 931
TasI AATT 4 cut(s) 155, 255, 387, 604
TatI WGTACW 2 cut(s) 40, 144
TauI GCSGC 1 cut(s) 842
TfiI GAWTC 1 cut(s) 865
Tru1I TTAA 2 cut(s) 158, 1137
Tru9I TTAA 2 cut(s) 158, 1137
TscAI CASTG 3 cut(s) 712, 1093, 1164
TseFI GTSAC 3 cut(s) 553, 770, 997
TseI GCWGC 1 cut(s) 759
Tsp45I GTSAC 3 cut(s) 553, 770, 997
TspDTI ATGAA 8 cut(s) 73, 84, 106, 479, 518, 950, 962, 1108
TspRI CASTG 3 cut(s) 712, 1093, 1164
Tth111I GACNNNGTC 1 cut(s) 878
VneI GTGCAC 1 cut(s) 731
VpaK11BI GGWCC 3 cut(s) 589, 788, 880
XapI RAATTY 1 cut(s) 604
XceI RCATGY 1 cut(s) 1129
XcmI CCANNNNNNNNNTGG 1 cut(s) 801
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.