Rh7DG329900

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004588
Physical Location & Seq
Reverse (-)
40018914 .. 40025888
6975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG329900.1

Sequence Viewer

Length: 1233 bp
ATGGTCAATTCTATTGGTTCAAACGCTAAGAGTTGGAATTCCCACCTAAAAATAAAATGCTGGAATATTCAGGTGTCTGTACTGTCAGATCCGAAGAATAGATCATTCTACTGCAGTCTCTTCATTGTAGTTTCATTGATTTCCGGTGCTTATTTCATTGGTAGTGCGTCCATTTCCCAGGAGTACAAGGAAAAATTAACTAGATGGAAAGTTATCTACAATATGCAGAATACAAATCTTGGTACTTGCAAGAAACGGTGCCAGCCGTCAGGGACTGAGGCATTACCGGAAGGAATTGTTGTCAAAACATCGGACTTGGAAATGCGGCCTTTATGGGGCTCCTCTACGAAAAATAAAAACTCAACGCCTTCAATGAGCTTGCTGGCTATTGCAGTTGGAATAAAACAGAAAGAAATAGTGGACAAAATTGTTAGGAAGTTTCTATCAAGTGATTTTGTGGTAATGCTTTTCCATTATGATGGTGCTGTGGATAAATGGAGGGACTTACCTTGGAGTGATACTGCCATACATGTATCTGTGATGAACCAAACAAAATGGTGGTTCGCAAAACGTTTCTTGCATCCAGATATAGTGACTGAATATAAATATATTTTTCTCTGGGATGAGGACCTCGGAGTTGAGAATTTTGATCCAGAACGATATCTATCAATTATTCGGGAAGAGGGACTTGAAATATCACAGCCAGCACTTGATCCTGTCAAATCGGAGGTGTATCATCCAATCACTGCACGTGCAAAGAAATCAAAAGTGCACAGAAGGTTTTATAAGTTCAAAGGCAGTGGAAGGTGCGATGATCAAAGCTCTGGTCCTCCATGTATAGGTTGGGTGGAAATGATGGCACCTGTATTCTCAAGTGCGGCTTGGCAATGTGTATGGTACATGATTCAGAATGACTTGATCCATGCATGGGGACTGGATGTGCAGCTTGGTTACTGTGCACAAGGGGATCGAATGAAAAATGTTGGTGTGGTTGACTCGGAATATATAGTTCATCTTGGTCTTCCTACACTTGGTGTCGCAGATGACAATAAGGGTATCAATGGCATGGCTCATTCTCACAAAGAGGGCTCAAAAGCATTGGCACCGTCTGGCCTCCCTCAAGCCAGTAATAGAGCTAAAGTTAGGATGCAGTCCTTCATTGACATGCGGATCTTTAAGGAAAGATGGAGGAATGCAGTGAAGGAGGATAAATGTTGGGTTGACCCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

410

Amino Acids

46.68

Weight (kDa)

9.01

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 87 - 402 3.2e-146 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
AccB1I GGYRCC 3 cut(s) 258, 859, 1102
AciI CCGC 3 cut(s) 325, 878, 1168
AclI AACGTT 1 cut(s) 571
AclWI GGATC 6 cut(s) 83, 644, 707, 913, 975, 1178
AcsI RAATTY 2 cut(s) 37, 643
AcvI CACGTG 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 1034
AfaI GTAC 4 cut(s) 81, 185, 244, 899
AfiI CCNNNNNNNGG 4 cut(s) 335, 839, 928, 1031
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 4 cut(s) 21, 372, 692, 793
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 4 cut(s) 378, 822, 946, 1136
AluI AGCT 4 cut(s) 378, 822, 946, 1136
Alw21I GWGCWC 2 cut(s) 774, 961
Alw26I GTCTC 1 cut(s) 122
Alw44I GTGCAC 2 cut(s) 770, 957
AlwI GGATC 6 cut(s) 83, 644, 707, 913, 975, 1178
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 2 cut(s) 326, 1111
ApaLI GTGCAC 2 cut(s) 770, 957
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 2 cut(s) 37, 643
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
AspS9I GGNCC 2 cut(s) 628, 827
AvaII GGWCC 2 cut(s) 628, 827
BaeGI GKGCMC 2 cut(s) 774, 961
BanI GGYRCC 3 cut(s) 258, 859, 1102
BanII GRGCYC 2 cut(s) 341, 1091
BbrPI CACGTG 1 cut(s) 752
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 2 cut(s) 774, 961
BbvI GCAGC 1 cut(s) 955
BccI CCATC 4 cut(s) 198, 473, 850, 1179
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 112
BisI GCNGC 3 cut(s) 326, 879, 944
BlsI GCNGC 3 cut(s) 327, 880, 945
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 2 cut(s) 628, 827
BmgT120I GGNCC 2 cut(s) 628, 827
BmiI GGNNCC 4 cut(s) 260, 340, 861, 1104
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 589, 1137
BpiI GAAGAC 1 cut(s) 1013
BpuEI CTTGAG 2 cut(s) 856, 1104
BsaAI YACGTR 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 664
BsaJI CCNNGG 3 cut(s) 177, 509, 631
BsaWI WCCGGW 2 cut(s) 143, 286
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 839, 928, 1031
Bse1I ACTGG 2 cut(s) 939, 1125
Bse3DI GCAATG 1 cut(s) 893
Bse8I GATNNNNATC 1 cut(s) 664
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 177, 509, 631
BseGI GGATG 5 cut(s) 580, 628, 736, 943, 1152
BseJI GATNNNNATC 1 cut(s) 664
BseLI CCNNNNNNNGG 4 cut(s) 335, 839, 928, 1031
BseMI GCAATG 1 cut(s) 893
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 939, 1125
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 2 cut(s) 774, 961
BseXI GCAGC 1 cut(s) 955
BsgI GTGCAG 2 cut(s) 732, 962
BshFI GGCC 2 cut(s) 328, 1113
BshNI GGYRCC 3 cut(s) 258, 859, 1102
BsiHKAI GWGCWC 2 cut(s) 774, 961
BsiSI CCGG 2 cut(s) 144, 287
BslFI GGGAC 4 cut(s) 286, 515, 699, 945
BslI CCNNNNNNNGG 4 cut(s) 335, 839, 928, 1031
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 4 cut(s) 286, 515, 699, 945
BsmI GAATGC 1 cut(s) 1198
BsnI GGCC 2 cut(s) 328, 1113
Bsp1286I GDGCHC 4 cut(s) 341, 774, 961, 1091
Bsp143I GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
BspACI CCGC 3 cut(s) 325, 878, 1168
BspANI GGCC 2 cut(s) 328, 1113
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 4 cut(s) 260, 340, 861, 1104
BspMAI CTGCAG 1 cut(s) 116
BspPI GGATC 6 cut(s) 83, 644, 707, 913, 975, 1178
BspT107I GGYRCC 3 cut(s) 258, 859, 1102
BsrDI GCAATG 1 cut(s) 893
BsrI ACTGG 2 cut(s) 939, 1125
BssECI CCNNGG 3 cut(s) 177, 509, 631
BssMI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
BssT1I CCWWGG 1 cut(s) 509
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 4 cut(s) 84, 258, 956, 1107
Bst6I CTCTTC 2 cut(s) 125, 675
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 263, 380, 384, 705
BstDEI CTNAG 2 cut(s) 27, 276
BstF5I GGATG 5 cut(s) 580, 628, 736, 943, 1152
BstKTI GATC 8 cut(s) 91, 104, 652, 715, 817, 921, 970, 1173
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 2 cut(s) 533, 1168
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 112
BstSLI GKGCMC 2 cut(s) 774, 961
BstV1I GCAGC 1 cut(s) 955
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 2 cut(s) 88, 1170
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 88, 1170
BsuRI GGCC 2 cut(s) 328, 1113
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 5 cut(s) 580, 628, 736, 943, 1152
BtsI GCAGTG 3 cut(s) 744, 805, 1203
BtsIMutI CAGTG 3 cut(s) 744, 805, 1203
Cac8I GCNNGC 4 cut(s) 263, 380, 384, 705
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 628, 827
CseI GACGC 1 cut(s) 156
Csp6I GTAC 4 cut(s) 80, 184, 243, 898
CspCI CAANNNNNGTGG 2 cut(s) 781, 816
CviAII CATG 7 cut(s) 530, 834, 901, 923, 927, 1066, 1165
CviQI GTAC 4 cut(s) 80, 184, 243, 898
DdeI CTNAG 2 cut(s) 27, 276
DpnI GATC 8 cut(s) 90, 103, 651, 714, 816, 920, 969, 1172
DpnII GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
DraIII CACNNNGTG 1 cut(s) 1034
Eam1104I CTCTTC 2 cut(s) 125, 675
EarI CTCTTC 2 cut(s) 125, 675
Eco130I CCWWGG 1 cut(s) 509
Eco24I GRGCYC 2 cut(s) 341, 1091
Eco32I GATATC 1 cut(s) 662
Eco47I GGWCC 2 cut(s) 628, 827
Eco72I CACGTG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 177
EcoRV GATATC 1 cut(s) 662
EcoT14I CCWWGG 1 cut(s) 509
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 2 cut(s) 341, 1091
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1168
FalI AAGNNNNNCTT 4 cut(s) 672, 704, 865, 897
FaqI GGGAC 4 cut(s) 286, 515, 699, 945
FatI CATG 7 cut(s) 529, 833, 900, 922, 926, 1065, 1164
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 326, 879, 944
FokI GGATG 5 cut(s) 567, 635, 723, 950, 1159
FriOI GRGCYC 2 cut(s) 341, 1091
Fsp4HI GCNGC 3 cut(s) 326, 879, 944
FspBI CTAG 1 cut(s) 201
GluI GCNGC 3 cut(s) 326, 879, 944
HaeIII GGCC 2 cut(s) 328, 1113
HapII CCGG 2 cut(s) 144, 287
HgaI GACGC 1 cut(s) 156
Hin1II CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1168
HincII GTYRAC 2 cut(s) 994, 1222
HindII GTYRAC 2 cut(s) 994, 1222
HinfI GANTC 2 cut(s) 904, 995
HpaII CCGG 2 cut(s) 144, 287
Hpy166II GTNNAC 5 cut(s) 421, 772, 959, 994, 1222
Hpy188I TCNGA 7 cut(s) 88, 93, 313, 635, 727, 909, 1000
Hpy188III TCNNGA 3 cut(s) 584, 653, 677
Hpy8I GTNNAC 5 cut(s) 421, 772, 959, 994, 1222
HpyAV CCTTC 6 cut(s) 284, 378, 771, 798, 1165, 1195
HpyCH4III ACNGT 4 cut(s) 84, 258, 956, 1107
HpyCH4IV ACGT 2 cut(s) 571, 751
HpyF3I CTNAG 2 cut(s) 27, 276
HpySE526I ACGT 2 cut(s) 571, 751
Hsp92II CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1168
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 1 cut(s) 955
LweI GCATC 2 cut(s) 589, 1137
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 571, 751
MaeIII GTNAC 2 cut(s) 592, 950
MalI GATC 8 cut(s) 90, 103, 651, 714, 816, 920, 969, 1172
MboI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
MboII GAAGA 4 cut(s) 106, 112, 692, 1013
MflI RGATCY 2 cut(s) 88, 1170
MhlI GDGCHC 4 cut(s) 341, 774, 961, 1091
MluCI AATT 7 cut(s) 7, 37, 194, 294, 426, 643, 669
MlyI GAGTC 1 cut(s) 989
MmeI TCCRAC 2 cut(s) 14, 376
Mph1103I ATGCAT 1 cut(s) 928
MseI TTAA 3 cut(s) 197, 1176, 1231
MslI CAYNNNNRTG 2 cut(s) 477, 1163
MspI CCGG 2 cut(s) 144, 287
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 1198
MvaI CCWGG 1 cut(s) 179
NdeII GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
NlaIII CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1168
NlaIV GGNNCC 4 cut(s) 260, 340, 861, 1104
NmuCI GTSAC 1 cut(s) 592
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 2 cut(s) 533, 1168
PciI ACATGT 1 cut(s) 529
PctI GAATGC 1 cut(s) 1198
PfeI GAWTC 1 cut(s) 904
PkrI GCNGC 3 cut(s) 327, 880, 945
PleI GAGTC 1 cut(s) 989
PmaCI CACGTG 1 cut(s) 752
PmlI CACGTG 1 cut(s) 752
PpsI GAGTC 1 cut(s) 989
Ppu21I YACGTR 1 cut(s) 752
PpuMI RGGWCCY 1 cut(s) 628
PscI ACATGT 1 cut(s) 529
PsiI TTATAA 1 cut(s) 786
Psp1406I AACGTT 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 628
Psp6I CCWGG 1 cut(s) 177
PspCI CACGTG 1 cut(s) 752
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 4 cut(s) 260, 340, 861, 1104
PspPI GGNCC 2 cut(s) 628, 827
PspPPI RGGWCCY 1 cut(s) 628
PstI CTGCAG 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 88, 1170
RsaI GTAC 4 cut(s) 81, 185, 244, 899
RsaNI GTAC 4 cut(s) 80, 184, 243, 898
RseI CAYNNNNRTG 2 cut(s) 477, 1163
SaqAI TTAA 3 cut(s) 197, 1176, 1231
SatI GCNGC 3 cut(s) 326, 879, 944
Sau3AI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1170
Sau96I GGNCC 2 cut(s) 628, 827
SchI GAGTC 1 cut(s) 989
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 4 cut(s) 341, 774, 961, 1091
SfaNI GCATC 2 cut(s) 589, 1137
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 2 cut(s) 628, 827
SmiMI CAYNNNNRTG 2 cut(s) 477, 1163
SmlI CTYRAG 2 cut(s) 871, 1119
SmoI CTYRAG 2 cut(s) 871, 1119
Sse9I AATT 7 cut(s) 7, 37, 194, 294, 426, 643, 669
SsiI CCGC 3 cut(s) 325, 878, 1168
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 4 cut(s) 84, 258, 956, 1107
TaiI ACGT 2 cut(s) 574, 754
TaqI TCGA 1 cut(s) 970
TasI AATT 7 cut(s) 7, 37, 194, 294, 426, 643, 669
TatI WGTACW 2 cut(s) 79, 183
TauI GCSGC 2 cut(s) 328, 881
TfiI GAWTC 1 cut(s) 904
Tru1I TTAA 3 cut(s) 197, 1176, 1231
Tru9I TTAA 3 cut(s) 197, 1176, 1231
TscAI CASTG 3 cut(s) 751, 805, 1203
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 7 cut(s) 112, 123, 145, 557, 989, 1001, 1147
TspRI CASTG 3 cut(s) 751, 805, 1203
VneI GTGCAC 2 cut(s) 770, 957
VpaK11BI GGWCC 2 cut(s) 628, 827
XapI RAATTY 2 cut(s) 37, 643
XceI RCATGY 2 cut(s) 533, 1168
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.