Rh7AG333600

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004588
Physical Location & Seq
Reverse (-)
38476661 .. 38483521
6861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG333600.1

Sequence Viewer

Length: 903 bp
ATGAATTGCAATTTCTTGCGACAGAAAAACTCAACGCCTTCAATGAGCTTGCTGGCTATTGCAGTTGGAATAAAACAGAAAGAAATAGTGGACAAAATTGTTAGGAAGTTTCGATCAAGTGATTTTGTGGTAATGCTTTTCCATTATGATGGTGCTGTGGATAAATGGAGGGACTTACCTTGGAGTGATACTGCCATACATGTATCTGTGATGAACCAAACAAAATGGTGGTTCGCAAAACGTTTCTTGCATCCAGATATAGTGACTGAATATAAATATATTTTTCTCTGGGATGAGGACCTCGGAGTTGAGAATTTTGATCCAGAACGATATCTATCAATTATTCGGGAAGAGGGACTTGAAATATCACAGCCAGCACTTGATCCTGTCAAATCGGAGGTGTATCATCCAATCACTGCACGTGCAAAGAAATCAAAAGTGCACAGAAGGTTTTATAAGTTCAAAGGCAGTGGAAGGTGCGATGATCAAAGCTCTGGTCCTCCATGTATAGGTTGGGTGGAAATGATGGCACCTGTATTCTCAAGTGCGGCTTGGCAATGTGTATGGTACATGATTCAGAATGACTTGATCCATGCATGGGGACTGGATGTGCAGCTTGGTTACTGTGCACAAGGGGATCGAATGAAAAATGTTGGTGTGGTTGACTCGGAATATATAGTTCATCTTGGTCTTCCTACACTTGGTGTCGCAGATGACCATAAGGGTATCAATGGCATGGCTCATTCTCACAAAGAGGGCTCAAAAGCATTGGCACCGTCTGGCCTCCCTCAAGCCAGTAATAGAGCTAAAGTTAGGATGCAGTCCTACATTGACATGCGGATCTTTAAGGAAAGATGGAGGAATGCAGTGAAGGAGGATAAATGTTGGGTTGACCCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

300

Amino Acids

34.55

Weight (kDa)

8.61

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 8 - 292 3.7e-134 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccB1I GGYRCC 2 cut(s) 529, 772
AciI CCGC 2 cut(s) 548, 838
AclI AACGTT 1 cut(s) 241
AclWI GGATC 5 cut(s) 314, 377, 583, 645, 848
AcsI RAATTY 1 cut(s) 313
AcvI CACGTG 1 cut(s) 422
AdeI CACNNNGTG 1 cut(s) 704
AfaI GTAC 1 cut(s) 569
AfiI CCNNNNNNNGG 3 cut(s) 509, 598, 701
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 3 cut(s) 42, 362, 463
AluBI AGCT 4 cut(s) 48, 492, 616, 806
AluI AGCT 4 cut(s) 48, 492, 616, 806
Alw21I GWGCWC 2 cut(s) 444, 631
Alw44I GTGCAC 2 cut(s) 440, 627
AlwI GGATC 5 cut(s) 314, 377, 583, 645, 848
AoxI GGCC 1 cut(s) 781
ApaLI GTGCAC 2 cut(s) 440, 627
ApeKI GCWGC 1 cut(s) 613
ApoI RAATTY 1 cut(s) 313
ArsI GACNNNNNNTTYG 2 cut(s) 481, 513
AspS9I GGNCC 2 cut(s) 298, 497
AvaII GGWCC 2 cut(s) 298, 497
BaeGI GKGCMC 2 cut(s) 444, 631
BanI GGYRCC 2 cut(s) 529, 772
BanII GRGCYC 1 cut(s) 761
BbrPI CACGTG 1 cut(s) 422
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 444, 631
BbvI GCAGC 1 cut(s) 625
BccI CCATC 3 cut(s) 143, 520, 849
BclI TGATCA 1 cut(s) 484
BisI GCNGC 2 cut(s) 549, 614
BlsI GCNGC 2 cut(s) 550, 615
Bme18I GGWCC 2 cut(s) 298, 497
BmgT120I GGNCC 2 cut(s) 298, 497
BmiI GGNNCC 2 cut(s) 531, 774
BmsI GCATC 2 cut(s) 259, 807
BpiI GAAGAC 1 cut(s) 683
BpuEI CTTGAG 2 cut(s) 526, 774
BsaAI YACGTR 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 334
BsaJI CCNNGG 2 cut(s) 179, 301
Bsc4I CCNNNNNNNGG 3 cut(s) 509, 598, 701
Bse1I ACTGG 2 cut(s) 609, 795
Bse3DI GCAATG 1 cut(s) 563
Bse8I GATNNNNATC 1 cut(s) 334
BseDI CCNNGG 2 cut(s) 179, 301
BseGI GGATG 5 cut(s) 250, 298, 406, 613, 822
BseJI GATNNNNATC 1 cut(s) 334
BseLI CCNNNNNNNGG 3 cut(s) 509, 598, 701
BseMI GCAATG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 609, 795
BseSI GKGCMC 2 cut(s) 444, 631
BseXI GCAGC 1 cut(s) 625
BsgI GTGCAG 2 cut(s) 402, 632
BshFI GGCC 1 cut(s) 783
BshNI GGYRCC 2 cut(s) 529, 772
BsiHKAI GWGCWC 2 cut(s) 444, 631
BslFI GGGAC 3 cut(s) 185, 369, 615
BslI CCNNNNNNNGG 3 cut(s) 509, 598, 701
BsmFI GGGAC 3 cut(s) 185, 369, 615
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 1 cut(s) 783
Bsp1286I GDGCHC 3 cut(s) 444, 631, 761
Bsp143I GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
BspACI CCGC 2 cut(s) 548, 838
BspANI GGCC 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 531, 774
BspPI GGATC 5 cut(s) 314, 377, 583, 645, 848
BspT107I GGYRCC 2 cut(s) 529, 772
BsrDI GCAATG 1 cut(s) 563
BsrI ACTGG 2 cut(s) 609, 795
BssECI CCNNGG 2 cut(s) 179, 301
BssMI GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
BssT1I CCWWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 626, 777
Bst6I CTCTTC 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 50, 54, 375
BstF5I GGATG 5 cut(s) 250, 298, 406, 613, 822
BstKTI GATC 7 cut(s) 116, 322, 385, 487, 591, 640, 843
BstMBI GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
BstNSI RCATGY 2 cut(s) 203, 838
BstSLI GKGCMC 2 cut(s) 444, 631
BstV1I GCAGC 1 cut(s) 625
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 840
BstXI CCANNNNNNTGG 1 cut(s) 149
BstYI RGATCY 1 cut(s) 840
BsuRI GGCC 1 cut(s) 783
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 5 cut(s) 250, 298, 406, 613, 822
BtsI GCAGTG 3 cut(s) 414, 475, 873
BtsIMutI CAGTG 3 cut(s) 414, 475, 873
Cac8I GCNNGC 3 cut(s) 50, 54, 375
Cfr13I GGNCC 2 cut(s) 298, 497
Csp6I GTAC 1 cut(s) 568
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 7 cut(s) 200, 504, 571, 593, 597, 736, 835
CviQI GTAC 1 cut(s) 568
DpnI GATC 7 cut(s) 115, 321, 384, 486, 590, 639, 842
DpnII GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
DraIII CACNNNGTG 1 cut(s) 704
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 761
Eco32I GATATC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 298, 497
Eco72I CACGTG 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 298
EcoRV GATATC 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 179
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 761
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 7 cut(s) 203, 507, 574, 596, 600, 739, 838
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 535, 567
FaqI GGGAC 3 cut(s) 185, 369, 615
FatI CATG 7 cut(s) 199, 503, 570, 592, 596, 735, 834
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 2 cut(s) 549, 614
FokI GGATG 5 cut(s) 237, 305, 393, 620, 829
FriOI GRGCYC 1 cut(s) 761
Fsp4HI GCNGC 2 cut(s) 549, 614
GluI GCNGC 2 cut(s) 549, 614
HaeIII GGCC 1 cut(s) 783
Hin1II CATG 7 cut(s) 203, 507, 574, 596, 600, 739, 838
HincII GTYRAC 2 cut(s) 664, 892
HindII GTYRAC 2 cut(s) 664, 892
HinfI GANTC 2 cut(s) 574, 665
Hpy166II GTNNAC 5 cut(s) 91, 442, 629, 664, 892
Hpy188I TCNGA 4 cut(s) 305, 397, 579, 670
Hpy188III TCNNGA 3 cut(s) 254, 323, 347
Hpy8I GTNNAC 5 cut(s) 91, 442, 629, 664, 892
HpyAV CCTTC 4 cut(s) 48, 441, 468, 865
HpyCH4III ACNGT 2 cut(s) 626, 777
HpyCH4IV ACGT 2 cut(s) 241, 421
HpySE526I ACGT 2 cut(s) 241, 421
Hsp92II CATG 7 cut(s) 203, 507, 574, 596, 600, 739, 838
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 2 cut(s) 259, 807
MaeII ACGT 2 cut(s) 241, 421
MaeIII GTNAC 2 cut(s) 262, 620
MalI GATC 7 cut(s) 115, 321, 384, 486, 590, 639, 842
MboI GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
MboII GAAGA 2 cut(s) 362, 683
MflI RGATCY 1 cut(s) 840
MhlI GDGCHC 3 cut(s) 444, 631, 761
MluCI AATT 5 cut(s) 4, 10, 96, 313, 339
MlyI GAGTC 1 cut(s) 659
MmeI TCCRAC 1 cut(s) 46
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 2 cut(s) 846, 901
MslI CAYNNNNRTG 2 cut(s) 147, 833
Mva1269I GAATGC 1 cut(s) 868
NdeII GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
NlaIII CATG 7 cut(s) 203, 507, 574, 596, 600, 739, 838
NlaIV GGNNCC 2 cut(s) 531, 774
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 2 cut(s) 203, 838
PciI ACATGT 1 cut(s) 199
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 1 cut(s) 574
PkrI GCNGC 2 cut(s) 550, 615
PleI GAGTC 1 cut(s) 659
PmaCI CACGTG 1 cut(s) 422
PmlI CACGTG 1 cut(s) 422
PpsI GAGTC 1 cut(s) 659
Ppu21I YACGTR 1 cut(s) 422
PpuMI RGGWCCY 1 cut(s) 298
PscI ACATGT 1 cut(s) 199
PsiI TTATAA 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 298
PspCI CACGTG 1 cut(s) 422
PspN4I GGNNCC 2 cut(s) 531, 774
PspPI GGNCC 2 cut(s) 298, 497
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 1 cut(s) 840
RsaI GTAC 1 cut(s) 569
RsaNI GTAC 1 cut(s) 568
RseI CAYNNNNRTG 2 cut(s) 147, 833
SaqAI TTAA 2 cut(s) 846, 901
SatI GCNGC 2 cut(s) 549, 614
Sau3AI GATC 7 cut(s) 113, 319, 382, 484, 588, 637, 840
Sau96I GGNCC 2 cut(s) 298, 497
SchI GAGTC 1 cut(s) 659
SduI GDGCHC 3 cut(s) 444, 631, 761
SfaNI GCATC 2 cut(s) 259, 807
SinI GGWCC 2 cut(s) 298, 497
SmiMI CAYNNNNRTG 2 cut(s) 147, 833
SmlI CTYRAG 2 cut(s) 541, 789
SmoI CTYRAG 2 cut(s) 541, 789
Sse9I AATT 5 cut(s) 4, 10, 96, 313, 339
SsiI CCGC 2 cut(s) 548, 838
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 2 cut(s) 626, 777
TaiI ACGT 2 cut(s) 244, 424
TaqI TCGA 2 cut(s) 112, 640
TasI AATT 5 cut(s) 4, 10, 96, 313, 339
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 2 cut(s) 846, 901
Tru9I TTAA 2 cut(s) 846, 901
TscAI CASTG 3 cut(s) 421, 475, 873
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 613
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 4 cut(s) 17, 227, 659, 671
TspRI CASTG 3 cut(s) 421, 475, 873
VneI GTGCAC 2 cut(s) 440, 627
VpaK11BI GGWCC 2 cut(s) 298, 497
XapI RAATTY 1 cut(s) 313
XceI RCATGY 2 cut(s) 203, 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.