Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004588

Physical Location & Seq

Genomic Coordinates Forward (+)

20824497 .. 20829932

Gene Structure 5436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGATCAAATGCCGCTGCGCTGTCTGACCCGAAGAATAGGTCATTCTACTGCAGTCTCTTCATTCTAGCTTCTTTGATCTGCGGGGCTTACTTCATCGGTGGTGCAACCATTGCTCACGAGTACAAGGAAAAATTAACAAGATGGAAAGTGGTCTACAATAGGCAGAATACAAATTTTCATACGTGCAAGAATCGTTGCCAACCTTCAGGGAGTGAGGCATTACCGGAAGGAATTATTGCCAAAACATCTGACTTGGAACCGCTGCCTCTATGGGGTTCATCTGTGAAAAATGAAAACTCAAAACCTTCTAAGAGCTTGCTGGCAATTGCAGTTGGAATAAGGCAGAAAGAAATAGTGGACAAAATTGTCAAAAAGTTTCTATCAAGTGATTTTGTTGTTATGCTTTTTCATTATGATGGTGCGTTGGATAAGTGGAGGGATTTACCTTGGAGTGATCGTGCCATACACGTGTCTGTGATGAATCAAACAAAATGGTGGTTCGCCAAACGTTTCCTGCATCCAGATATAGTTTCCGAGTACAAATATATTTTTCTTTGGGATGAGGACCTTGGAGTTGAGAATTTTAACCCAAAACGATATGTATCCATTATTCAGGAAGAGGGACTTGAAATATCACAGCCAGCACTTGATCCTGACAAGTCAGAGGTGTATCATCCAATCACTGCACGTGTGAAGAAATCAAAAGTGCACAGAAGGTTTCATAAATATAAAGGCAGTGCAAGGTGTGACGACCATAGTTCTGCTCCTCCTTGTGCTGGTTGGGTGGAAATGATGGCACCTGTATTCTCAAGATCTGCATGGCAATGTGTATGGTACATGATCCAGAATGATCTGGTCCATGCATGGGGCCTGGATGTGCAGCTTGGTTATTGTGCACAAGGAGATCGAACACAAAACGTTGGTGTGGTTGACTCAGAGTATATAGTTCATCTTGGTCTTCCTACGCTCGGTGTCTCAGATGGCAATAAGGTGACCAATGGCCCGGATCCTTCTCAGAAAGGGGACTCGAAAGCATTGGCACCATCTTCCTCGGATAAAGTCAATGATCGATCTAAAGTTAGGATGCAGTCCTTTATTGACATGCAGATCTTTAAGGAAAGATGGAGTGCTGCAATAAGGGAGGATAAATGTTGGGTTGACCCGTATCAACTATCAACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

396

Amino Acids

44.82

Weight (kDa)

8.57

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18530 AT4G18530 AT4G18530
fragaria_vesca	FvH4_5g28210 FvH4_5g28210 FvH4_5g28210
malus_domestica	MD08G1245700.v1.1 MD15G1440900.v1.1
prunus_persica	Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1 Prupe.1G583200_v2.0.a1
pyrus_communis	pycom08g21320 pycom15g38870
rosa_chinensis	RchiOBHm_Chr7g0220251
rosa_laevigata	RLG00000002246
rosa_multiflora	Rmu_sc0001136.1_g000022
rosa_roxburghii	Rroxscaffold_3G00239680
rosa_rugosa	Rorug07G0191500 Rorug07G0191600
rosa_samantha	Rh7AG333600 Rh7BG323600 Rh7CG351200 Rh7DG329900
rosa_wichuraiana	Rw7G028140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	368
AccB1I	GGYRCC	2 cut(s)	799, 1042
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	15, 84, 263
AclI	AACGTT	2 cut(s)	511, 921
AclWI	GGATC	5 cut(s)	13, 647, 838, 1004, 1017
AcsI	RAATTY	2 cut(s)	175, 583
AcuI	CTGAAG	1 cut(s)	192
AcvI	CACGTG	2 cut(s)	472, 692
AfaI	GTAC	3 cut(s)	125, 542, 839
AfiI	CCNNNNNNNGG	4 cut(s)	275, 779, 868, 971
AflIII	ACRYGT	3 cut(s)	469, 471, 691
AgsI	TTSAA	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	873
AluBI	AGCT	3 cut(s)	71, 318, 886
AluI	AGCT	3 cut(s)	71, 318, 886
Alw21I	GWGCWC	2 cut(s)	714, 901
Alw26I	GTCTC	2 cut(s)	62, 982
Alw44I	GTGCAC	2 cut(s)	710, 897
AlwI	GGATC	5 cut(s)	13, 647, 838, 1004, 1017
AoxI	GGCC	2 cut(s)	871, 1003
ApaLI	GTGCAC	2 cut(s)	710, 897
ApeKI	GCWGC	4 cut(s)	17, 265, 883, 1133
ApoI	RAATTY	2 cut(s)	175, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	4 cut(s)	568, 859, 871, 1004
AsuC2I	CCSGG	1 cut(s)	1007
AsuHPI	GGTGA	1 cut(s)	1006
AvaII	GGWCC	2 cut(s)	568, 859
BaeGI	GKGCMC	2 cut(s)	714, 901
BamHI	GGATCC	1 cut(s)	1009
BanI	GGYRCC	2 cut(s)	799, 1042
BauI	CACGAG	1 cut(s)	119
BbrPI	CACGTG	2 cut(s)	472, 692
BbsI	GAAGAC	1 cut(s)	953
Bbv12I	GWGCWC	2 cut(s)	714, 901
BbvI	GCAGC	4 cut(s)	4, 252, 895, 1120
BccI	CCATC	6 cut(s)	138, 413, 790, 977, 1054, 1119
BciT130I	CCWGG	1 cut(s)	875
BciVI	GTATCC	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	1007
BcoDI	GTCTC	2 cut(s)	62, 982
BfaI	CTAG	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	616
BglII	AGATCT	2 cut(s)	815, 1110
BisI	GCNGC	5 cut(s)	15, 18, 266, 884, 1134
BlsI	GCNGC	5 cut(s)	16, 19, 267, 885, 1135
Bme1390I	CCNGG	2 cut(s)	875, 1007
Bme18I	GGWCC	2 cut(s)	568, 859
BmgT120I	GGNCC	4 cut(s)	568, 859, 871, 1004
BmiI	GGNNCC	5 cut(s)	261, 801, 872, 1011, 1044
BmrFI	CCNGG	2 cut(s)	875, 1007
BmsI	GCATC	2 cut(s)	529, 1077
BpiI	GAAGAC	1 cut(s)	953
BpuEI	CTTGAG	1 cut(s)	796
BpuMI	CCSGG	1 cut(s)	1007
Bsa29I	ATCGAT	1 cut(s)	1072
BsaAI	YACGTR	3 cut(s)	186, 472, 692
BsaBI	GATNNNNATC	1 cut(s)	604
BsaJI	CCNNGG	3 cut(s)	449, 571, 1053
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	445, 475
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 779, 868, 971
Bse3DI	GCAATG	2 cut(s)	111, 833
Bse8I	GATNNNNATC	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	875
BseCI	ATCGAT	1 cut(s)	1072
BseDI	CCNNGG	3 cut(s)	449, 571, 1053
BseGI	GGATG	5 cut(s)	520, 568, 676, 883, 1092
BseJI	GATNNNNATC	1 cut(s)	604
BseLI	CCNNNNNNNGG	4 cut(s)	275, 779, 868, 971
BseMI	GCAATG	2 cut(s)	111, 833
BseMII	CTCAG	3 cut(s)	951, 993, 1031
BseRI	GAGGAG	1 cut(s)	759
BseSI	GKGCMC	2 cut(s)	714, 901
BseXI	GCAGC	4 cut(s)	4, 252, 895, 1120
BsgI	GTGCAG	2 cut(s)	672, 902
BshFI	GGCC	2 cut(s)	873, 1005
BshNI	GGYRCC	2 cut(s)	799, 1042
BshVI	ATCGAT	1 cut(s)	1072
BsiHKAI	GWGCWC	2 cut(s)	714, 901
BsiSI	CCGG	2 cut(s)	227, 1007
BslFI	GGGAC	2 cut(s)	639, 1040
BslI	CCNNNNNNNGG	4 cut(s)	275, 779, 868, 971
BsmAI	GTCTC	2 cut(s)	62, 982
BsmFI	GGGAC	2 cut(s)	639, 1040
BsnI	GGCC	2 cut(s)	873, 1005
Bsp1286I	GDGCHC	2 cut(s)	714, 901
BspACI	CCGC	3 cut(s)	15, 84, 263
BspANI	GGCC	2 cut(s)	873, 1005
BspCNI	CTCAG	3 cut(s)	950, 992, 1030
BspDI	ATCGAT	1 cut(s)	1072
BspLI	GGNNCC	5 cut(s)	261, 801, 872, 1011, 1044
BspMAI	CTGCAG	1 cut(s)	56
BspPI	GGATC	5 cut(s)	13, 647, 838, 1004, 1017
BspT107I	GGYRCC	2 cut(s)	799, 1042
BsrDI	GCAATG	2 cut(s)	111, 833
BssECI	CCNNGG	3 cut(s)	449, 571, 1053
BssSI	CACGAG	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	449, 571
Bst2BI	CACGAG	1 cut(s)	119
Bst2UI	CCWGG	1 cut(s)	875
Bst6I	CTCTTC	2 cut(s)	65, 615
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBAI	YACGTR	3 cut(s)	186, 472, 692
BstC8I	GCNNGC	3 cut(s)	320, 324, 645
BstDEI	CTNAG	4 cut(s)	312, 937, 979, 1017
BstEII	GGTNACC	1 cut(s)	994
BstF5I	GGATG	5 cut(s)	520, 568, 676, 883, 1092
BstHHI	GCGC	1 cut(s)	22
BstMAI	GTCTC	2 cut(s)	62, 982
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	875
BstNSI	RCATGY	1 cut(s)	1108
BstPI	GGTNACC	1 cut(s)	994
BstSCI	CCNGG	2 cut(s)	873, 1005
BstSFI	CTRYAG	1 cut(s)	52
BstSLI	GKGCMC	2 cut(s)	714, 901
BstV1I	GCAGC	4 cut(s)	4, 252, 895, 1120
BstV2I	GAAGAC	1 cut(s)	953
BstX2I	RGATCY	3 cut(s)	815, 1009, 1110
BstYI	RGATCY	3 cut(s)	815, 1009, 1110
Bsu15I	ATCGAT	1 cut(s)	1072
BsuI	GTATCC	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	873, 1005
BsuTUI	ATCGAT	1 cut(s)	1072
BtsCI	GGATG	5 cut(s)	520, 568, 676, 883, 1092
BtsI	GCAGTG	2 cut(s)	684, 745
BtsIMutI	CAGTG	2 cut(s)	684, 745
Cac8I	GCNNGC	3 cut(s)	320, 324, 645
CfoI	GCGC	1 cut(s)	22
Cfr13I	GGNCC	4 cut(s)	568, 859, 871, 1004
ClaI	ATCGAT	1 cut(s)	1072
Csp6I	GTAC	3 cut(s)	124, 541, 838
CviAII	CATG	5 cut(s)	822, 841, 863, 867, 1105
CviJI	RGCY	7 cut(s)	71, 89, 318, 643, 873, 886, 1005
CviKI_1	RGCY	7 cut(s)	71, 89, 318, 643, 873, 886, 1005
CviQI	GTAC	3 cut(s)	124, 541, 838
DdeI	CTNAG	4 cut(s)	312, 937, 979, 1017
DrdI	GACNNNNNNGTC	1 cut(s)	368
DseDI	GACNNNNNNGTC	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	65, 615
EarI	CTCTTC	2 cut(s)	65, 615
Eco130I	CCWWGG	2 cut(s)	449, 571
Eco47I	GGWCC	2 cut(s)	568, 859
Eco57I	CTGAAG	1 cut(s)	192
Eco72I	CACGTG	2 cut(s)	472, 692
Eco91I	GGTNACC	1 cut(s)	994
EcoO109I	RGGNCCY	2 cut(s)	568, 871
EcoO65I	GGTNACC	1 cut(s)	994
EcoRII	CCWGG	1 cut(s)	873
EcoT14I	CCWWGG	2 cut(s)	449, 571
EcoT22I	ATGCAT	1 cut(s)	868
ErhI	CCWWGG	2 cut(s)	449, 571
FaeI	CATG	5 cut(s)	825, 844, 866, 870, 1108
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	2 cut(s)	639, 1040
FatI	CATG	5 cut(s)	821, 840, 862, 866, 1104
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	5 cut(s)	15, 18, 266, 884, 1134
FokI	GGATG	5 cut(s)	507, 575, 663, 890, 1099
Fsp4HI	GCNGC	5 cut(s)	15, 18, 266, 884, 1134
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	5 cut(s)	15, 18, 266, 884, 1134
HaeIII	GGCC	2 cut(s)	873, 1005
HapII	CCGG	2 cut(s)	227, 1007
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	5 cut(s)	825, 844, 866, 870, 1108
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	2 cut(s)	934, 1162
HindII	GTYRAC	2 cut(s)	934, 1162
HinfI	GANTC	4 cut(s)	193, 484, 935, 1028
HpaII	CCGG	2 cut(s)	227, 1007
HphI	GGTGA	1 cut(s)	1006
Hpy166II	GTNNAC	6 cut(s)	157, 361, 712, 899, 934, 1162
Hpy188I	TCNGA	8 cut(s)	28, 253, 538, 667, 940, 982, 1020, 1057
Hpy188III	TCNNGA	6 cut(s)	119, 524, 617, 656, 813, 847
Hpy8I	GTNNAC	6 cut(s)	157, 361, 712, 899, 934, 1162
HpyAV	CCTTC	5 cut(s)	216, 224, 318, 711, 1023
HpyCH4IV	ACGT	5 cut(s)	185, 471, 511, 691, 921
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	4 cut(s)	312, 937, 979, 1017
HpySE526I	ACGT	5 cut(s)	185, 471, 511, 691, 921
Hsp92II	CATG	5 cut(s)	825, 844, 866, 870, 1108
HspAI	GCGC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	772
Lsp1109I	GCAGC	4 cut(s)	4, 252, 895, 1120
LweI	GCATC	2 cut(s)	529, 1077
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	5 cut(s)	185, 471, 511, 691, 921
MaeIII	GTNAC	2 cut(s)	749, 994
MboII	GAAGA	6 cut(s)	46, 52, 632, 709, 953, 1041
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	3 cut(s)	815, 1009, 1110
MhlI	GDGCHC	2 cut(s)	714, 901
MluCI	AATT	6 cut(s)	134, 175, 234, 327, 366, 583
MlyI	GAGTC	2 cut(s)	929, 1022
MmeI	TCCRAC	2 cut(s)	316, 408
MnlI	CCTC	9 cut(s)	211, 279, 432, 559, 616, 661, 780, 1063, 1138
Mph1103I	ATGCAT	1 cut(s)	868
MseI	TTAA	3 cut(s)	137, 588, 1116
MslI	CAYNNNNRTG	3 cut(s)	417, 470, 826
MspA1I	CMGCKG	2 cut(s)	17, 265
MspI	CCGG	2 cut(s)	227, 1007
MspR9I	CCNGG	2 cut(s)	875, 1007
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	875
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	1007
NlaIII	CATG	5 cut(s)	825, 844, 866, 870, 1108
NlaIV	GGNNCC	5 cut(s)	261, 801, 872, 1011, 1044
NmuCI	GTSAC	2 cut(s)	749, 994
NsiI	ATGCAT	1 cut(s)	868
NspI	RCATGY	1 cut(s)	1108
PfeI	GAWTC	2 cut(s)	193, 484
PkrI	GCNGC	5 cut(s)	16, 19, 267, 885, 1135
PleI	GAGTC	2 cut(s)	929, 1022
PmaCI	CACGTG	2 cut(s)	472, 692
PmlI	CACGTG	2 cut(s)	472, 692
PpsI	GAGTC	2 cut(s)	929, 1022
Ppu21I	YACGTR	3 cut(s)	186, 472, 692
PpuMI	RGGWCCY	1 cut(s)	568
Psp1406I	AACGTT	2 cut(s)	511, 921
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	873
PspCI	CACGTG	2 cut(s)	472, 692
PspEI	GGTNACC	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	873
PspN4I	GGNNCC	5 cut(s)	261, 801, 872, 1011, 1044
PspPI	GGNCC	4 cut(s)	568, 859, 871, 1004
PspPPI	RGGWCCY	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	56
PsuI	RGATCY	3 cut(s)	815, 1009, 1110
RsaI	GTAC	3 cut(s)	125, 542, 839
RsaNI	GTAC	3 cut(s)	124, 541, 838
RseI	CAYNNNNRTG	3 cut(s)	417, 470, 826
SaqAI	TTAA	3 cut(s)	137, 588, 1116
SatI	GCNGC	5 cut(s)	15, 18, 266, 884, 1134
Sau96I	GGNCC	4 cut(s)	568, 859, 871, 1004
SchI	GAGTC	2 cut(s)	929, 1022
ScrFI	CCNGG	2 cut(s)	875, 1007
SduI	GDGCHC	2 cut(s)	714, 901
SfaNI	GCATC	2 cut(s)	529, 1077
SfcI	CTRYAG	1 cut(s)	52
SinI	GGWCC	2 cut(s)	568, 859
SmiMI	CAYNNNNRTG	3 cut(s)	417, 470, 826
SmlI	CTYRAG	1 cut(s)	811
SmoI	CTYRAG	1 cut(s)	811
Sse9I	AATT	6 cut(s)	134, 175, 234, 327, 366, 583
SsiI	CCGC	3 cut(s)	15, 84, 263
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	873, 1005
StyI	CCWWGG	2 cut(s)	449, 571
TaiI	ACGT	5 cut(s)	188, 474, 514, 694, 924
TaqI	TCGA	3 cut(s)	910, 1031, 1072
TasI	AATT	6 cut(s)	134, 175, 234, 327, 366, 583
TatI	WGTACW	2 cut(s)	123, 540
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	193, 484
Tru1I	TTAA	3 cut(s)	137, 588, 1116
Tru9I	TTAA	3 cut(s)	137, 588, 1116
TscAI	CASTG	2 cut(s)	691, 745
TseFI	GTSAC	2 cut(s)	749, 994
TseI	GCWGC	4 cut(s)	17, 265, 883, 1133
Tsp45I	GTSAC	2 cut(s)	749, 994
TspDTI	ATGAA	9 cut(s)	52, 85, 170, 270, 309, 401, 497, 713, 941
TspRI	CASTG	2 cut(s)	691, 745
VneI	GTGCAC	2 cut(s)	710, 897
VpaK11BI	GGWCC	2 cut(s)	568, 859
XapI	RAATTY	2 cut(s)	175, 583
XceI	RCATGY	1 cut(s)	1108
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.