Rw7G028140

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004588
Physical Location & Seq
Reverse (-)
37560000 .. 37566831
6832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028140.1

Sequence Viewer

Length: 1074 bp
ATGCTCCTCAAAGTTGCCACAATGATCAATCCTGTGTCTGTACTGTCAGATCCGAAGAATAGATCATTCTACTGCAGTCTCTTCATTGTAGTTGCATTGATTTCCGGTGCTTATTTCATTGGTAGTGCGTCCATTTCTCAGGAGTACAAGGAAAAATTAACTAGATGGAAAGTTATCTACAATATGCAGAATACAAATCTTGGTACTTGCAAGAAACGGTGCCAGCCGTCAGGGACTGAGGCATTACCGGAAGGAATTGTTGTCAAAACATCGGACTTGGAAATGCGGCCTTTATGGGGCTCCTCTACGAAAAATAAAAACTCAACGCCTTCAATGAGCTTGCTGGCTATTGCAGTTGGAATAAAACAGAAAGAAATAGTGGACAAAATTGTTAGGAAGTTTTTATCAAGTGATTTTGTGGTAATGCTTTTCCATTATGATGGTGCTGTGGATAAATGGAGGGACTTACCTTGGAGTGATACTGCCATACATGTATCTGTGATGAACCAAACAAAATGGTGGTTCGCAAAACGTTTCTTGCATCCAGATATAGTGACTGAATATAAATATATTTTTCTCTGGGATGAGGACCTCGGAGTTGAGAATTTTGATCCAGAACGATATCTATCAATTATTCGGGAAGAGGGACTTGAAATATCACAGCCAGCACTTGATCCTGTCAAATCGGAGGTGTATCATCCAATCACTGCACGTGCAAAGAAATCAAAAGTGCACAGAAGGTTTTATAAGTTCAAAGGCAGTGGAAGGTGCGATGATCAAAGCTCTGGTCCTCCATGTATAGGTTGGGTGGAAATGATGGCACCAGTATTCTCAAGTGCGGCTTGGCAATGTGTATGGTACATGATTCAGAATGACTTGATCCATGCATGGGGACTGGATGTGCAGCTTGGTTACTGTGCACAAGGGGATCGAATGAAAAATGTTGGTGTGGTTGACTCGGAATATATAGTTCATCTTGGTCTTCCTACACTTGGTGTCGCAGATGACAATAAGGGTATCAATGGCATGGTTCATTCTCACAAAGAGGGCTCAAAAGCATTGGTGAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

357

Amino Acids

40.39

Weight (kDa)

8.52

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 74 - 338 3.1e-140 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AccB1I GGYRCC 2 cut(s) 219, 820
AciI CCGC 2 cut(s) 286, 839
AclI AACGTT 1 cut(s) 532
AclWI GGATC 5 cut(s) 44, 605, 668, 874, 936
AcsI RAATTY 1 cut(s) 604
AcvI CACGTG 1 cut(s) 713
AdeI CACNNNGTG 1 cut(s) 995
AfaI GTAC 4 cut(s) 42, 146, 205, 860
AfiI CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
AflIII ACRYGT 1 cut(s) 490
AgsI TTSAA 3 cut(s) 333, 653, 754
AluBI AGCT 3 cut(s) 339, 783, 907
AluI AGCT 3 cut(s) 339, 783, 907
Alw21I GWGCWC 2 cut(s) 735, 922
Alw26I GTCTC 1 cut(s) 83
Alw44I GTGCAC 2 cut(s) 731, 918
AlwI GGATC 5 cut(s) 44, 605, 668, 874, 936
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 287
ApaLI GTGCAC 2 cut(s) 731, 918
ApeKI GCWGC 1 cut(s) 904
ApoI RAATTY 1 cut(s) 604
ArsI GACNNNNNNTTYG 2 cut(s) 772, 804
AspS9I GGNCC 2 cut(s) 589, 788
AvaII GGWCC 2 cut(s) 589, 788
BaeGI GKGCMC 2 cut(s) 735, 922
BanI GGYRCC 2 cut(s) 219, 820
BanII GRGCYC 2 cut(s) 302, 1052
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 974
Bbv12I GWGCWC 2 cut(s) 735, 922
BbvI GCAGC 1 cut(s) 916
BccI CCATC 3 cut(s) 159, 434, 811
BceAI ACGGC 1 cut(s) 211
BclI TGATCA 2 cut(s) 24, 775
BcoDI GTCTC 1 cut(s) 83
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 73
BisI GCNGC 3 cut(s) 287, 840, 905
BlsI GCNGC 3 cut(s) 288, 841, 906
Bme18I GGWCC 2 cut(s) 589, 788
BmgT120I GGNCC 2 cut(s) 589, 788
BmiI GGNNCC 3 cut(s) 221, 301, 822
BmsI GCATC 1 cut(s) 550
BpiI GAAGAC 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 817
BsaAI YACGTR 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 625
BsaJI CCNNGG 2 cut(s) 470, 592
BsaWI WCCGGW 2 cut(s) 104, 247
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
Bse1I ACTGG 2 cut(s) 824, 900
Bse3DI GCAATG 1 cut(s) 854
Bse8I GATNNNNATC 1 cut(s) 625
BseDI CCNNGG 2 cut(s) 470, 592
BseGI GGATG 4 cut(s) 541, 589, 697, 904
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
BseMI GCAATG 1 cut(s) 854
BseMII CTCAG 2 cut(s) 152, 228
BseNI ACTGG 2 cut(s) 824, 900
BseRI GAGGAG 1 cut(s) 292
BseSI GKGCMC 2 cut(s) 735, 922
BseXI GCAGC 1 cut(s) 916
BsgI GTGCAG 2 cut(s) 693, 923
BshFI GGCC 1 cut(s) 289
BshNI GGYRCC 2 cut(s) 219, 820
BsiHKAI GWGCWC 2 cut(s) 735, 922
BsiSI CCGG 2 cut(s) 105, 248
BslFI GGGAC 4 cut(s) 247, 476, 660, 906
BslI CCNNNNNNNGG 4 cut(s) 296, 800, 889, 992
BsmAI GTCTC 1 cut(s) 83
BsmFI GGGAC 4 cut(s) 247, 476, 660, 906
BsnI GGCC 1 cut(s) 289
Bsp1286I GDGCHC 4 cut(s) 302, 735, 922, 1052
Bsp143I GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
BspACI CCGC 2 cut(s) 286, 839
BspANI GGCC 1 cut(s) 289
BspCNI CTCAG 2 cut(s) 151, 229
BspLI GGNNCC 3 cut(s) 221, 301, 822
BspMAI CTGCAG 1 cut(s) 77
BspPI GGATC 5 cut(s) 44, 605, 668, 874, 936
BspT107I GGYRCC 2 cut(s) 219, 820
BsrDI GCAATG 1 cut(s) 854
BsrI ACTGG 2 cut(s) 824, 900
BssECI CCNNGG 2 cut(s) 470, 592
BssMI GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
BssT1I CCWWGG 1 cut(s) 470
Bst4CI ACNGT 3 cut(s) 45, 219, 917
Bst6I CTCTTC 2 cut(s) 86, 636
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 224, 341, 345, 666
BstDEI CTNAG 2 cut(s) 138, 237
BstF5I GGATG 4 cut(s) 541, 589, 697, 904
BstKTI GATC 8 cut(s) 27, 52, 65, 613, 676, 778, 882, 931
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
BstNSI RCATGY 1 cut(s) 494
BstSFI CTRYAG 1 cut(s) 73
BstSLI GKGCMC 2 cut(s) 735, 922
BstV1I GCAGC 1 cut(s) 916
BstV2I GAAGAC 1 cut(s) 974
BstX2I RGATCY 1 cut(s) 49
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 786
BtsCI GGATG 4 cut(s) 541, 589, 697, 904
BtsI GCAGTG 2 cut(s) 705, 766
BtsIMutI CAGTG 2 cut(s) 705, 766
Cac8I GCNNGC 4 cut(s) 224, 341, 345, 666
CaiI CAGNNNCTG 1 cut(s) 236
Cfr13I GGNCC 2 cut(s) 589, 788
CseI GACGC 1 cut(s) 117
Csp6I GTAC 4 cut(s) 41, 145, 204, 859
CspCI CAANNNNNGTGG 2 cut(s) 742, 777
CviAII CATG 6 cut(s) 491, 795, 862, 884, 888, 1027
CviQI GTAC 4 cut(s) 41, 145, 204, 859
DdeI CTNAG 2 cut(s) 138, 237
DpnI GATC 8 cut(s) 26, 51, 64, 612, 675, 777, 881, 930
DpnII GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
DraIII CACNNNGTG 1 cut(s) 995
Eam1104I CTCTTC 2 cut(s) 86, 636
EarI CTCTTC 2 cut(s) 86, 636
Eco130I CCWWGG 1 cut(s) 470
Eco24I GRGCYC 2 cut(s) 302, 1052
Eco32I GATATC 1 cut(s) 623
Eco47I GGWCC 2 cut(s) 589, 788
Eco72I CACGTG 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 589
EcoRV GATATC 1 cut(s) 623
EcoT14I CCWWGG 1 cut(s) 470
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 2 cut(s) 302, 1052
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 6 cut(s) 494, 798, 865, 887, 891, 1030
FalI AAGNNNNNCTT 4 cut(s) 633, 665, 826, 858
FaqI GGGAC 4 cut(s) 247, 476, 660, 906
FatI CATG 6 cut(s) 490, 794, 861, 883, 887, 1026
FbaI TGATCA 2 cut(s) 24, 775
Fnu4HI GCNGC 3 cut(s) 287, 840, 905
FokI GGATG 4 cut(s) 528, 596, 684, 911
FriOI GRGCYC 2 cut(s) 302, 1052
Fsp4HI GCNGC 3 cut(s) 287, 840, 905
FspBI CTAG 1 cut(s) 162
GluI GCNGC 3 cut(s) 287, 840, 905
HaeIII GGCC 1 cut(s) 289
HapII CCGG 2 cut(s) 105, 248
HgaI GACGC 1 cut(s) 117
Hin1II CATG 6 cut(s) 494, 798, 865, 887, 891, 1030
HincII GTYRAC 1 cut(s) 955
HindII GTYRAC 1 cut(s) 955
HinfI GANTC 2 cut(s) 865, 956
HpaII CCGG 2 cut(s) 105, 248
Hpy166II GTNNAC 4 cut(s) 382, 733, 920, 955
Hpy188I TCNGA 7 cut(s) 49, 54, 274, 596, 688, 870, 961
Hpy188III TCNNGA 4 cut(s) 140, 545, 614, 638
Hpy8I GTNNAC 4 cut(s) 382, 733, 920, 955
HpyAV CCTTC 4 cut(s) 245, 339, 732, 759
HpyCH4III ACNGT 3 cut(s) 45, 219, 917
HpyCH4IV ACGT 2 cut(s) 532, 712
HpyF3I CTNAG 2 cut(s) 138, 237
HpySE526I ACGT 2 cut(s) 532, 712
Hsp92II CATG 6 cut(s) 494, 798, 865, 887, 891, 1030
Ksp22I TGATCA 2 cut(s) 24, 775
Kzo9I GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
LmnI GCTCC 2 cut(s) 9, 305
Lsp1109I GCAGC 1 cut(s) 916
LweI GCATC 1 cut(s) 550
MaeI CTAG 1 cut(s) 162
MaeII ACGT 2 cut(s) 532, 712
MaeIII GTNAC 2 cut(s) 553, 911
MalI GATC 8 cut(s) 26, 51, 64, 612, 675, 777, 881, 930
MboI GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
MboII GAAGA 4 cut(s) 67, 73, 653, 974
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 4 cut(s) 302, 735, 922, 1052
MluCI AATT 5 cut(s) 155, 255, 387, 604, 630
MlyI GAGTC 1 cut(s) 950
MmeI TCCRAC 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 889
MseI TTAA 2 cut(s) 158, 1072
MslI CAYNNNNRTG 1 cut(s) 438
MspI CCGG 2 cut(s) 105, 248
NdeII GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
NlaIII CATG 6 cut(s) 494, 798, 865, 887, 891, 1030
NlaIV GGNNCC 3 cut(s) 221, 301, 822
NmuCI GTSAC 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 1 cut(s) 494
PciI ACATGT 1 cut(s) 490
PfeI GAWTC 1 cut(s) 865
PkrI GCNGC 3 cut(s) 288, 841, 906
PleI GAGTC 1 cut(s) 950
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 1 cut(s) 950
Ppu21I YACGTR 1 cut(s) 713
PpuMI RGGWCCY 1 cut(s) 589
PscI ACATGT 1 cut(s) 490
PsiI TTATAA 1 cut(s) 747
Psp1406I AACGTT 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 589
PspCI CACGTG 1 cut(s) 713
PspN4I GGNNCC 3 cut(s) 221, 301, 822
PspPI GGNCC 2 cut(s) 589, 788
PspPPI RGGWCCY 1 cut(s) 589
PstI CTGCAG 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 49
RsaI GTAC 4 cut(s) 42, 146, 205, 860
RsaNI GTAC 4 cut(s) 41, 145, 204, 859
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 158, 1072
SatI GCNGC 3 cut(s) 287, 840, 905
Sau3AI GATC 8 cut(s) 24, 49, 62, 610, 673, 775, 879, 928
Sau96I GGNCC 2 cut(s) 589, 788
SchI GAGTC 1 cut(s) 950
SduI GDGCHC 4 cut(s) 302, 735, 922, 1052
SfaNI GCATC 1 cut(s) 550
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 2 cut(s) 589, 788
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 5 cut(s) 155, 255, 387, 604, 630
SsiI CCGC 2 cut(s) 286, 839
SspMI CTAG 1 cut(s) 162
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 3 cut(s) 45, 219, 917
TaiI ACGT 2 cut(s) 535, 715
TaqI TCGA 1 cut(s) 931
TasI AATT 5 cut(s) 155, 255, 387, 604, 630
TatI WGTACW 2 cut(s) 40, 144
TauI GCSGC 2 cut(s) 289, 842
TfiI GAWTC 1 cut(s) 865
Tru1I TTAA 2 cut(s) 158, 1072
Tru9I TTAA 2 cut(s) 158, 1072
TscAI CASTG 2 cut(s) 712, 766
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 1 cut(s) 904
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 6 cut(s) 73, 106, 518, 950, 962, 1022
TspRI CASTG 2 cut(s) 712, 766
VneI GTGCAC 2 cut(s) 731, 918
VpaK11BI GGWCC 2 cut(s) 589, 788
XapI RAATTY 1 cut(s) 604
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 801
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.