Rroxscaffold_3G00239680

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004588
Physical Location & Seq
Forward (+)
30147687 .. 30154436
6750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239680.1

Sequence Viewer

Length: 1194 bp
ATGGTCAATTCTATTGGTTCAAACGCCAAGAGTTGGAATTCCCACCTAAAAATAAAATGCTGGAATATTCAGGTGTCTGTACTGTCAGATCCGAAGAATAGATCATTCTACTGCAGTCTCTTCATTGTACTTTCATTGATTTCCGGTGCTTATTTCATTGGTAGTGCGTCCATTTCTCAGGAGTACAAGGAAAAATTAACTAGATGGAAAGTTATCTACAATATGCAGAATACAAATCTTGATACTTGCAAGAAACGGTGCCAGCCGTCAGGGACTGAGGCATTACCGGAAGGAATTGTTGTCAAAACATCGGACTTGGAAATGCGGCCTTTATGGGGCTCCTCTATGAAAAATAAAAACTCAACGCCTTCAATGAGCTTGCTGGCTATTGCAGTTGGAATAAAACAGAAAGAAATAGTGGACAAAATTGTTAGGAAGTTTCTATCAAGTGATTTTGTGGTAATGCTGTTCCATTATGATGGTGCTGTGGATAAATGGAGGGACTTACCTTGGAGTGATACTGCCATACATGTATCTGTGATGAACCAAACAAAATGGTGGTTCGCAAAACGTTTCTTGCATCCTGATATAGTGACTGAATATAAATATATTTTTCTCTGGGATGAGGACCTCGGAGTTGAGAATTTTGATCCAGAACGATATCTATCAATTATTCGGGAAGAGGGACTTGAAATATCACAGCCAGCACTTGATCCTGTCAAATCGGAGGTGTATCATCCAATCACAGCACGTGCAAAGAAATCAAAAGTGCACAGAAGGTTTTATAAGTTCAAAGGCAGTGGAAGGTGCGATGATCAAAGCTCTGGTCCTCCATGTGTAGGTTGGGTGGAAATGATGGCACCTGTATTCTCAAGTGCGGCTTGGCAATGTGTATGGTACATGATTCAGAATGACTTGATCCATGCATGGGGACTGGATGTGCAGCTTGGTTATTGTGCACAAGGGGATCGAATGAAAAATGTTGGTGTGGTTGACTCAGAATATATAGTTCATCTTGGTCTTCCTACACTTGGTGTCGCAGATGACAATAAGGGTATCAATGGCATGGCTCATTCTCACGAAGAGGGCTCAAAAGCATTGGTTAGGATGCAGTCCTTCATTGACATGCGGATCTTTAAGGAAAGATGGACGAATGCAGTGAAGGAGGATAAATGTTGGGTTGACCCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

397

Amino Acids

45.44

Weight (kDa)

8.42

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 87 - 389 2.3e-146 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 786
AccB1I GGYRCC 2 cut(s) 258, 859
AccB7I CCANNNNNTGG 1 cut(s) 33
AciI CCGC 3 cut(s) 325, 878, 1129
AclI AACGTT 1 cut(s) 571
AclWI GGATC 6 cut(s) 83, 644, 707, 913, 975, 1139
AcsI RAATTY 2 cut(s) 37, 643
AcvI CACGTG 1 cut(s) 752
AdeI CACNNNGTG 1 cut(s) 1034
AfaI GTAC 4 cut(s) 81, 129, 185, 899
AfiI CCNNNNNNNGG 5 cut(s) 33, 335, 839, 928, 1031
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 4 cut(s) 21, 372, 692, 793
AluBI AGCT 3 cut(s) 378, 822, 946
AluI AGCT 3 cut(s) 378, 822, 946
Alw21I GWGCWC 2 cut(s) 774, 961
Alw26I GTCTC 1 cut(s) 122
Alw44I GTGCAC 2 cut(s) 770, 957
AlwI GGATC 6 cut(s) 83, 644, 707, 913, 975, 1139
AlwNI CAGNNNCTG 1 cut(s) 275
AoxI GGCC 1 cut(s) 326
ApaLI GTGCAC 2 cut(s) 770, 957
ApeKI GCWGC 1 cut(s) 943
ApoI RAATTY 2 cut(s) 37, 643
ArsI GACNNNNNNTTYG 2 cut(s) 811, 843
AspS9I GGNCC 2 cut(s) 628, 827
AvaII GGWCC 2 cut(s) 628, 827
BaeGI GKGCMC 2 cut(s) 774, 961
BanI GGYRCC 2 cut(s) 258, 859
BanII GRGCYC 2 cut(s) 341, 1091
BbrPI CACGTG 1 cut(s) 752
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 2 cut(s) 774, 961
BbvI GCAGC 1 cut(s) 955
BccI CCATC 4 cut(s) 198, 473, 850, 1140
BceAI ACGGC 1 cut(s) 250
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 1 cut(s) 201
BfmI CTRYAG 1 cut(s) 112
BisI GCNGC 3 cut(s) 326, 879, 944
BlsI GCNGC 3 cut(s) 327, 880, 945
Bme18I GGWCC 2 cut(s) 628, 827
BmgT120I GGNCC 2 cut(s) 628, 827
BmiI GGNNCC 3 cut(s) 260, 340, 861
BmsI GCATC 2 cut(s) 589, 1098
BpiI GAAGAC 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 856
BsaAI YACGTR 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 509, 631
BsaWI WCCGGW 2 cut(s) 143, 286
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 335, 839, 928, 1031
Bse1I ACTGG 1 cut(s) 939
Bse3DI GCAATG 1 cut(s) 893
Bse8I GATNNNNATC 1 cut(s) 664
BseDI CCNNGG 2 cut(s) 509, 631
BseGI GGATG 5 cut(s) 580, 628, 736, 943, 1113
BseJI GATNNNNATC 1 cut(s) 664
BseLI CCNNNNNNNGG 5 cut(s) 33, 335, 839, 928, 1031
BseMI GCAATG 1 cut(s) 893
BseMII CTCAG 3 cut(s) 191, 267, 1011
BseNI ACTGG 1 cut(s) 939
BseRI GAGGAG 1 cut(s) 331
BseSI GKGCMC 2 cut(s) 774, 961
BseXI GCAGC 1 cut(s) 955
BsgI GTGCAG 1 cut(s) 962
BshFI GGCC 1 cut(s) 328
BshNI GGYRCC 2 cut(s) 258, 859
BsiHKAI GWGCWC 2 cut(s) 774, 961
BsiSI CCGG 2 cut(s) 144, 287
BslFI GGGAC 4 cut(s) 286, 515, 699, 945
BslI CCNNNNNNNGG 5 cut(s) 33, 335, 839, 928, 1031
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 4 cut(s) 286, 515, 699, 945
BsmI GAATGC 1 cut(s) 1159
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 4 cut(s) 341, 774, 961, 1091
Bsp143I GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
BspACI CCGC 3 cut(s) 325, 878, 1129
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 3 cut(s) 190, 268, 1010
BspLI GGNNCC 3 cut(s) 260, 340, 861
BspMAI CTGCAG 1 cut(s) 116
BspPI GGATC 6 cut(s) 83, 644, 707, 913, 975, 1139
BspT107I GGYRCC 2 cut(s) 258, 859
BsrDI GCAATG 1 cut(s) 893
BsrI ACTGG 1 cut(s) 939
BssECI CCNNGG 2 cut(s) 509, 631
BssMI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
BssT1I CCWWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 84, 258
Bst6I CTCTTC 3 cut(s) 125, 675, 1077
BstBAI YACGTR 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 263, 380, 384, 705
BstDEI CTNAG 3 cut(s) 177, 276, 997
BstF5I GGATG 5 cut(s) 580, 628, 736, 943, 1113
BstKTI GATC 8 cut(s) 91, 104, 652, 715, 817, 921, 970, 1134
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
BstNSI RCATGY 2 cut(s) 533, 1129
BstSFI CTRYAG 1 cut(s) 112
BstSLI GKGCMC 2 cut(s) 774, 961
BstV1I GCAGC 1 cut(s) 955
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 2 cut(s) 88, 1131
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 88, 1131
BsuRI GGCC 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 5 cut(s) 580, 628, 736, 943, 1113
BtsI GCAGTG 2 cut(s) 805, 1164
BtsIMutI CAGTG 2 cut(s) 805, 1164
Cac8I GCNNGC 4 cut(s) 263, 380, 384, 705
CaiI CAGNNNCTG 1 cut(s) 275
Cfr13I GGNCC 2 cut(s) 628, 827
CseI GACGC 1 cut(s) 156
Csp6I GTAC 4 cut(s) 80, 128, 184, 898
CspCI CAANNNNNGTGG 2 cut(s) 781, 816
CviAII CATG 7 cut(s) 530, 834, 901, 923, 927, 1066, 1126
CviQI GTAC 4 cut(s) 80, 128, 184, 898
DdeI CTNAG 3 cut(s) 177, 276, 997
DpnI GATC 8 cut(s) 90, 103, 651, 714, 816, 920, 969, 1133
DpnII GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
DraIII CACNNNGTG 1 cut(s) 1034
Eam1104I CTCTTC 3 cut(s) 125, 675, 1077
EarI CTCTTC 3 cut(s) 125, 675, 1077
Eco130I CCWWGG 1 cut(s) 509
Eco24I GRGCYC 2 cut(s) 341, 1091
Eco32I GATATC 1 cut(s) 662
Eco47I GGWCC 2 cut(s) 628, 827
Eco72I CACGTG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 628
EcoRI GAATTC 1 cut(s) 37
EcoRV GATATC 1 cut(s) 662
EcoT14I CCWWGG 1 cut(s) 509
EcoT22I ATGCAT 1 cut(s) 928
EcoT38I GRGCYC 2 cut(s) 341, 1091
ErhI CCWWGG 1 cut(s) 509
FaeI CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1129
FalI AAGNNNNNCTT 4 cut(s) 672, 704, 865, 897
FaqI GGGAC 4 cut(s) 286, 515, 699, 945
FatI CATG 7 cut(s) 529, 833, 900, 922, 926, 1065, 1125
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 3 cut(s) 326, 879, 944
FokI GGATG 5 cut(s) 567, 635, 723, 950, 1120
FriOI GRGCYC 2 cut(s) 341, 1091
Fsp4HI GCNGC 3 cut(s) 326, 879, 944
FspBI CTAG 1 cut(s) 201
GluI GCNGC 3 cut(s) 326, 879, 944
HaeIII GGCC 1 cut(s) 328
HapII CCGG 2 cut(s) 144, 287
HgaI GACGC 1 cut(s) 156
Hin1II CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1129
HincII GTYRAC 2 cut(s) 994, 1183
HindII GTYRAC 2 cut(s) 994, 1183
HinfI GANTC 2 cut(s) 904, 995
HpaII CCGG 2 cut(s) 144, 287
Hpy166II GTNNAC 5 cut(s) 421, 772, 959, 994, 1183
Hpy188I TCNGA 7 cut(s) 88, 93, 313, 635, 727, 909, 1000
Hpy188III TCNNGA 6 cut(s) 179, 239, 584, 653, 677, 1079
Hpy8I GTNNAC 5 cut(s) 421, 772, 959, 994, 1183
HpyAV CCTTC 6 cut(s) 284, 378, 771, 798, 1126, 1156
HpyCH4III ACNGT 2 cut(s) 84, 258
HpyCH4IV ACGT 2 cut(s) 571, 751
HpyF3I CTNAG 3 cut(s) 177, 276, 997
HpySE526I ACGT 2 cut(s) 571, 751
Hsp92II CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1129
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
LmnI GCTCC 1 cut(s) 344
Lsp1109I GCAGC 1 cut(s) 955
LweI GCATC 2 cut(s) 589, 1098
MaeI CTAG 1 cut(s) 201
MaeII ACGT 2 cut(s) 571, 751
MaeIII GTNAC 1 cut(s) 592
MalI GATC 8 cut(s) 90, 103, 651, 714, 816, 920, 969, 1133
MboI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
MboII GAAGA 5 cut(s) 106, 112, 692, 1013, 1094
MflI RGATCY 2 cut(s) 88, 1131
MhlI GDGCHC 4 cut(s) 341, 774, 961, 1091
MluCI AATT 7 cut(s) 7, 37, 194, 294, 426, 643, 669
MlyI GAGTC 1 cut(s) 989
MmeI TCCRAC 2 cut(s) 14, 376
Mph1103I ATGCAT 1 cut(s) 928
MseI TTAA 3 cut(s) 197, 1137, 1192
MslI CAYNNNNRTG 2 cut(s) 477, 1124
MspI CCGG 2 cut(s) 144, 287
Mva1269I GAATGC 1 cut(s) 1159
NdeII GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
NlaIII CATG 7 cut(s) 533, 837, 904, 926, 930, 1069, 1129
NlaIV GGNNCC 3 cut(s) 260, 340, 861
NmuCI GTSAC 1 cut(s) 592
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 2 cut(s) 533, 1129
PciI ACATGT 1 cut(s) 529
PctI GAATGC 1 cut(s) 1159
PfeI GAWTC 1 cut(s) 904
PflMI CCANNNNNTGG 1 cut(s) 33
PkrI GCNGC 3 cut(s) 327, 880, 945
PleI GAGTC 1 cut(s) 989
PmaCI CACGTG 1 cut(s) 752
PmlI CACGTG 1 cut(s) 752
PpsI GAGTC 1 cut(s) 989
Ppu21I YACGTR 1 cut(s) 752
PpuMI RGGWCCY 1 cut(s) 628
PscI ACATGT 1 cut(s) 529
PsiI TTATAA 1 cut(s) 786
Psp1406I AACGTT 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 628
PspCI CACGTG 1 cut(s) 752
PspN4I GGNNCC 3 cut(s) 260, 340, 861
PspPI GGNCC 2 cut(s) 628, 827
PspPPI RGGWCCY 1 cut(s) 628
PstI CTGCAG 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 275
PsuI RGATCY 2 cut(s) 88, 1131
RsaI GTAC 4 cut(s) 81, 129, 185, 899
RsaNI GTAC 4 cut(s) 80, 128, 184, 898
RseI CAYNNNNRTG 2 cut(s) 477, 1124
SaqAI TTAA 3 cut(s) 197, 1137, 1192
SatI GCNGC 3 cut(s) 326, 879, 944
Sau3AI GATC 8 cut(s) 88, 101, 649, 712, 814, 918, 967, 1131
Sau96I GGNCC 2 cut(s) 628, 827
SchI GAGTC 1 cut(s) 989
SduI GDGCHC 4 cut(s) 341, 774, 961, 1091
SfaNI GCATC 2 cut(s) 589, 1098
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 2 cut(s) 628, 827
SmiMI CAYNNNNRTG 2 cut(s) 477, 1124
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
Sse9I AATT 7 cut(s) 7, 37, 194, 294, 426, 643, 669
SsiI CCGC 3 cut(s) 325, 878, 1129
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 509
TaaI ACNGT 2 cut(s) 84, 258
TaiI ACGT 2 cut(s) 574, 754
TaqI TCGA 1 cut(s) 970
TasI AATT 7 cut(s) 7, 37, 194, 294, 426, 643, 669
TatI WGTACW 3 cut(s) 79, 127, 183
TauI GCSGC 2 cut(s) 328, 881
TfiI GAWTC 1 cut(s) 904
Tru1I TTAA 3 cut(s) 197, 1137, 1192
Tru9I TTAA 3 cut(s) 197, 1137, 1192
TscAI CASTG 2 cut(s) 805, 1164
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 1 cut(s) 943
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 8 cut(s) 112, 123, 145, 362, 557, 989, 1001, 1108
TspRI CASTG 2 cut(s) 805, 1164
Van91I CCANNNNNTGG 1 cut(s) 33
VneI GTGCAC 2 cut(s) 770, 957
VpaK11BI GGWCC 2 cut(s) 628, 827
XapI RAATTY 2 cut(s) 37, 643
XceI RCATGY 2 cut(s) 533, 1129
XcmI CCANNNNNNNNNTGG 1 cut(s) 840
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.