Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013056

Physical Location & Seq

Genomic Coordinates Forward (+)

20566905 .. 20567684

Gene Structure 780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATGTCCAACCTCCAGTATTGGCTCGTTGACCACCCAACCATCCTCTACTTCACATGGACGGAGGGTGAAACCCCGGCCTCCACACCACTCTTCCTCACCCTCGCCCTCCTCACCTACCTCTCCCTCACTCTCCTCCTCACGCGCCTCCCACTCCCCCCACTCAACCTCAAACCAATCTCCGCCCTCCACAACCTCACCCTCTTCCTCCTCTCCCTCACCATGGCCCTCGGCTGCACCCTCTCCATCCTCTCCTCCCCTTCCTCCACCCTCTGCTTCTCCCCCACCACCACCACCCCAACTGGGCCCCTCTTCTTCTGGGCCTACGTCTTCTACCTCTCCAAGCTCCTCGAGTTCCTCGACACCCTGCTCATCATCCTCACCCGCTCCCTCCACCGCCTCTCCTTCCTCCACGTCTACCACCACGCCACCGTCCTCCTCATGTGCTACCTCTGGCTCCACACCCGCCAGTCACTCTTCCCCGTCGCCCTCGTCACCAACGCCTCCGTCCACGTCCTCATGTACGCCTACTACTTCCTCTGCGCCGTCGGGATACGCCCCAGGTGGAAGCGCGCCGTCACAGACTGCCAGATAGTCCAGTTCGTTTTCAGCTTTGCGGTTTCGGGTCGGATGCTGTACCTGCATTTCTCCGGGTCTGGGTGCTCCGGAATCTGGGGATGGTGCTTCAATGCCGTCTTTAATGCCTCGCTGCTGGCGCTTTTTCTTGATTTTCATGGCAAGAGCTATGCCAGTAGAAACCCAAAGGATAAACGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

260

Amino Acids

29.41

Weight (kDa)

9.23

Isoelectric Point (pI)

36.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	26 - 256	6.3e-58	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06460 AT3G06470
fragaria_vesca	FvH4_5g29630
malus_domestica	MD08G1227900.v1.1 MD15G1421700.v1.1 MD15G1421900.v1.1
prunus_persica	Prupe.1G567000_v2.0.a1 Prupe.1G567100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222681 RchiOBHm_Chr7g0222701
rosa_laevigata	RLG00000002032
rosa_roxburghii	Rroxscaffold_3G00236540 Rroxscaffold_3G00236550
rosa_rugosa	Rorug07G0212000 Rorug07G0212000
rosa_samantha	Rh7BG344500
rosa_wichuraiana	Rw7G030200 Rw7G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	648
AccBSI	CCGCTC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	2 cut(s)	145, 573
AccIII	TCCGGA	1 cut(s)	665
AciI	CCGC	5 cut(s)	183, 385, 397, 466, 617
AfaI	GTAC	2 cut(s)	524, 638
AfiI	CCNNNNNNNGG	4 cut(s)	223, 303, 657, 672
AgsI	TTSAA	1 cut(s)	688
AjiI	CACGTC	2 cut(s)	415, 514
AjnI	CCWGG	1 cut(s)	560
AluBI	AGCT	3 cut(s)	346, 612, 744
AluI	AGCT	3 cut(s)	346, 612, 744
Alw21I	GWGCWC	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	350
Aor13HI	TCCGGA	1 cut(s)	665
AoxI	GGCC	4 cut(s)	78, 225, 305, 321
ApaI	GGGCCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	234, 709
AspLEI	GCGC	5 cut(s)	147, 545, 573, 575, 718
AspS9I	GGNCC	4 cut(s)	226, 305, 306, 321
AsuC2I	CCSGG	2 cut(s)	77, 652
AsuHPI	GGTGA	7 cut(s)	80, 91, 106, 190, 211, 373, 487
AvaI	CYCGRG	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	309
BbsI	GAAGAC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	665
BbvI	GCAGC	2 cut(s)	221, 696
BccI	CCATC	3 cut(s)	50, 254, 672
BceAI	ACGGC	3 cut(s)	530, 560, 677
BciT130I	CCWGG	1 cut(s)	562
BciVI	GTATCC	1 cut(s)	546
BcnI	CCSGG	2 cut(s)	77, 652
BfoI	RGCGCY	1 cut(s)	719
BfuAI	ACCTGC	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	2 cut(s)	235, 710
BlsI	GCNGC	2 cut(s)	236, 711
Bme1390I	CCNGG	3 cut(s)	77, 562, 652
BmeT110I	CYCGRG	1 cut(s)	350
BmgBI	CACGTC	2 cut(s)	415, 514
BmgT120I	GGNCC	4 cut(s)	226, 305, 306, 321
BmiI	GGNNCC	3 cut(s)	307, 308, 458
BmrFI	CCNGG	3 cut(s)	77, 562, 652
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	322
BpuMI	CCSGG	2 cut(s)	77, 652
BsaJI	CCNNGG	4 cut(s)	75, 222, 229, 560
BsaWI	WCCGGW	1 cut(s)	665
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 303, 657, 672
Bse1I	ACTGG	5 cut(s)	16, 307, 469, 598, 750
BseAI	TCCGGA	1 cut(s)	665
BseBI	CCWGG	1 cut(s)	562
BseDI	CCNNGG	4 cut(s)	75, 222, 229, 560
BseGI	GGATG	5 cut(s)	42, 246, 375, 636, 683
BseLI	CCNNNNNNNGG	4 cut(s)	223, 303, 657, 672
BseNI	ACTGG	5 cut(s)	16, 307, 469, 598, 750
BsePI	GCGCGC	1 cut(s)	571
BseRI	GAGGAG	7 cut(s)	101, 125, 128, 200, 244, 338, 428
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	221, 696
BsgI	GTGCAG	1 cut(s)	220
Bsh1236I	CGCG	2 cut(s)	145, 573
BshFI	GGCC	4 cut(s)	80, 227, 307, 323
BsiHKAI	GWGCWC	1 cut(s)	665
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	3 cut(s)	77, 651, 666
BslI	CCNNNNNNNGG	4 cut(s)	223, 303, 657, 672
BsnI	GGCC	4 cut(s)	80, 227, 307, 323
BsoBI	CYCGRG	1 cut(s)	350
Bsp120I	GGGCCC	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	309, 665
Bsp13I	TCCGGA	1 cut(s)	665
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	5 cut(s)	183, 385, 397, 466, 617
BspANI	GGCC	4 cut(s)	80, 227, 307, 323
BspEI	TCCGGA	1 cut(s)	665
BspFNI	CGCG	2 cut(s)	145, 573
BspHI	TCATGA	1 cut(s)	776
BspLI	GGNNCC	3 cut(s)	307, 308, 458
BspMI	ACCTGC	1 cut(s)	648
BsrBI	CCGCTC	1 cut(s)	387
BsrI	ACTGG	5 cut(s)	16, 307, 469, 598, 750
BssECI	CCNNGG	4 cut(s)	75, 222, 229, 560
BssHII	GCGCGC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	562
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	4 cut(s)	98, 209, 317, 482
BstC8I	GCNNGC	2 cut(s)	573, 714
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	5 cut(s)	42, 246, 375, 636, 683
BstFNI	CGCG	2 cut(s)	145, 573
BstH2I	RGCGCY	1 cut(s)	719
BstHHI	GCGC	5 cut(s)	147, 545, 573, 575, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	640, 715
BstNI	CCWGG	1 cut(s)	562
BstSCI	CCNGG	3 cut(s)	75, 560, 650
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	2 cut(s)	145, 573
BstV1I	GCAGC	2 cut(s)	221, 696
BstV2I	GAAGAC	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	4 cut(s)	80, 227, 307, 323
BtgI	CCRYGG	1 cut(s)	222
BtrI	CACGTC	2 cut(s)	415, 514
BtsCI	GGATG	5 cut(s)	42, 246, 375, 636, 683
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	2 cut(s)	573, 714
CciI	TCATGA	1 cut(s)	776
CfoI	GCGC	5 cut(s)	147, 545, 573, 575, 718
Cfr13I	GGNCC	4 cut(s)	226, 305, 306, 321
Csp6I	GTAC	2 cut(s)	523, 637
CviAII	CATG	6 cut(s)	57, 223, 442, 520, 734, 777
CviQI	GTAC	2 cut(s)	523, 637
Eam1104I	CTCTTC	4 cut(s)	98, 209, 317, 482
EarI	CTCTTC	4 cut(s)	98, 209, 317, 482
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	6 cut(s)	60, 226, 445, 523, 737, 780
FaiI	YATR	7 cut(s)	58, 224, 443, 521, 735, 747, 778
FatI	CATG	6 cut(s)	56, 222, 441, 519, 733, 776
FauI	CCCGC	2 cut(s)	392, 473
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	235, 710
FokI	GGATG	5 cut(s)	29, 233, 362, 643, 690
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	235, 710
GlaI	GCGC	5 cut(s)	146, 544, 572, 574, 717
GluI	GCNGC	2 cut(s)	235, 710
HaeII	RGCGCY	1 cut(s)	719
HaeIII	GGCC	4 cut(s)	80, 227, 307, 323
HapII	CCGG	3 cut(s)	77, 651, 666
HhaI	GCGC	5 cut(s)	147, 545, 573, 575, 718
Hin1II	CATG	6 cut(s)	60, 226, 445, 523, 737, 780
Hin6I	GCGC	5 cut(s)	145, 543, 571, 573, 716
HinP1I	GCGC	5 cut(s)	145, 543, 571, 573, 716
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	669
HpaII	CCGG	3 cut(s)	77, 651, 666
HphI	GGTGA	7 cut(s)	80, 91, 106, 190, 211, 373, 487
Hpy166II	GTNNAC	3 cut(s)	31, 418, 511
Hpy188I	TCNGA	1 cut(s)	630
Hpy188III	TCNNGA	4 cut(s)	550, 666, 725, 777
Hpy8I	GTNNAC	3 cut(s)	31, 418, 511
Hpy99I	CGWCG	2 cut(s)	488, 551
HpyAV	CCTTC	2 cut(s)	270, 415
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	3 cut(s)	327, 414, 513
HpyCH4V	TGCA	2 cut(s)	237, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	640, 715
HpySE526I	ACGT	3 cut(s)	327, 414, 513
Hsp92II	CATG	6 cut(s)	60, 226, 445, 523, 737, 780
HspAI	GCGC	5 cut(s)	145, 543, 571, 573, 716
Kpn2I	TCCGGA	1 cut(s)	665
LmnI	GCTCC	4 cut(s)	351, 392, 462, 668
Lsp1109I	GCAGC	2 cut(s)	221, 696
LweI	GCATC	1 cut(s)	621
MaeII	ACGT	3 cut(s)	327, 414, 513
MaeIII	GTNAC	3 cut(s)	471, 493, 577
MbiI	CCGCTC	1 cut(s)	387
MboII	GAAGA	6 cut(s)	85, 196, 304, 307, 322, 469
MhlI	GDGCHC	2 cut(s)	309, 665
MmeI	TCCRAC	2 cut(s)	33, 608
MroI	TCCGGA	1 cut(s)	665
MseI	TTAA	1 cut(s)	699
MspI	CCGG	3 cut(s)	77, 651, 666
MspR9I	CCNGG	3 cut(s)	77, 562, 652
MvaI	CCWGG	1 cut(s)	562
MvnI	CGCG	2 cut(s)	145, 573
MwoI	GCNNNNNNNGC	2 cut(s)	640, 715
NciI	CCSGG	2 cut(s)	77, 652
NcoI	CCATGG	1 cut(s)	222
NlaIII	CATG	6 cut(s)	60, 226, 445, 523, 737, 780
NlaIV	GGNNCC	3 cut(s)	307, 308, 458
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	3 cut(s)	471, 493, 577
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	776
PauI	GCGCGC	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	669
PkrI	GCNGC	2 cut(s)	236, 711
Psp6I	CCWGG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	560
PspN4I	GGNNCC	3 cut(s)	307, 308, 458
PspOMI	GGGCCC	1 cut(s)	305
PspPI	GGNCC	4 cut(s)	226, 305, 306, 321
PspXI	VCTCGAGB	1 cut(s)	350
PteI	GCGCGC	1 cut(s)	571
RsaI	GTAC	2 cut(s)	524, 638
RsaNI	GTAC	2 cut(s)	523, 637
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	2 cut(s)	235, 710
Sau96I	GGNCC	4 cut(s)	226, 305, 306, 321
ScrFI	CCNGG	3 cut(s)	77, 562, 652
SduI	GDGCHC	2 cut(s)	309, 665
SfaNI	GCATC	1 cut(s)	621
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SsiI	CCGC	5 cut(s)	183, 385, 397, 466, 617
StyD4I	CCNGG	3 cut(s)	75, 560, 650
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	3 cut(s)	330, 417, 516
TaqI	TCGA	2 cut(s)	351, 360
TfiI	GAWTC	1 cut(s)	669
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TseFI	GTSAC	3 cut(s)	471, 493, 577
TseI	GCWGC	2 cut(s)	234, 709
Tsp45I	GTSAC	3 cut(s)	471, 493, 577
TspDTI	ATGAA	1 cut(s)	722
TspGWI	ACGGA	2 cut(s)	77, 496
XhoI	CTCGAG	1 cut(s)	350
XmiI	GTMKAC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.