MD15G1421700.v1.1

elongation of fatty acids protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013056
Physical Location & Seq
Reverse (-)
52352260 .. 52353072
813 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1421700.v1.1.491

Sequence Viewer

Length: 813 bp
ATGGACCTCAACATGAACCTCAACATCTCAAGTACCTTCCAGTATTGGCTGGTGAAGCACCCGGTCATCCTCCACTTCTCATGGATCCCTGGAGAAACACCGGCCTCCACCCCGCTTTTCCTCACTCTCACCATCATTTCCTACCTTGCCCTCACTTTCCTCCTCTCCCACCTCCCTCTCCCGCTCATCAAACCCCGCCGCCTCAAACCCATCACCGCCTTCCACAACCTCAACCTCCTCCTCCTCTCCCTCGTCATGGCCGTCGGTTCCTTAGTCTCCATCTTCTCCTACGCGCCCTACCCCTTCTGGATTATCTGTTTGCCGCCCAAAACCCCGCCAACTGGTCCCCTCTTCTTCTGGGCGTACATCTTCTACCTCTCAAAAATCTACGAGTTCGTGGATACGTTCCTGATCATCCTCAGCGGGAGTTTTCAGCGTCTGACATTCCTCCATGTCTACCACCACACGATGGTGCTGGTCATGTGCTACATTTGGCTCCACACGTCGCAGTCTCTGTTCCCGGCGGTGATAGTAGCAAATGGGACGGTTCACGTGGTTATGTATACCTACTACTTGTTGGCTGCGCTCGGGGCCAGGCCAAAGTGGAAGAGGAGGGTGACGGAGTTTCAAATATTTCAGTTCATGTCAAGCTTTGTTGGGTTGGTTTGGATGCTCATCTACCATTTCAATCGCTCTGCTGGTTGCTCTGGGATATGGGGTTGGTGCTTTAACATTTTTTTCTATGTTTCCCTTTTGGCTTTGTTCATGGACTTCCATCACAAGAGTTATGGCAGCTCCAAGAAAGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ELO

Protein Analysis

271

Amino Acids

31.35

Weight (kDa)

9.5

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 34 - 268 2.9e-54 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 469
AccBSI CCGCTC 1 cut(s) 184
AccI GTMKAC 2 cut(s) 456, 563
AccII CGCG 1 cut(s) 293
AciI CCGC 9 cut(s) 113, 182, 196, 199, 216, 323, 335, 423, 524
AclWI GGATC 2 cut(s) 79, 92
AcoI YGGCCR 1 cut(s) 258
AcvI CACGTG 1 cut(s) 553
AfaI GTAC 2 cut(s) 34, 365
AfiI CCNNNNNNNGG 3 cut(s) 256, 341, 469
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 2 cut(s) 629, 688
AjiI CACGTC 1 cut(s) 504
AjnI CCWGG 2 cut(s) 88, 593
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 2 cut(s) 651, 795
AluI AGCT 2 cut(s) 651, 795
Alw26I GTCTC 2 cut(s) 280, 516
AlwI GGATC 2 cut(s) 79, 92
AlwNI CAGNNNCTG 2 cut(s) 439, 514
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 4 cut(s) 102, 258, 591, 596
ApeKI GCWGC 2 cut(s) 581, 792
AspLEI GCGC 2 cut(s) 295, 586
AspS9I GGNCC 3 cut(s) 4, 344, 591
AsuC2I CCSGG 2 cut(s) 62, 521
AsuHPI GGTGA 5 cut(s) 64, 121, 205, 538, 628
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 2 cut(s) 4, 344
BamHI GGATCC 1 cut(s) 84
BbrPI CACGTG 1 cut(s) 553
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 568, 804
BccI CCATC 5 cut(s) 140, 218, 287, 463, 783
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 2 cut(s) 90, 595
BciVI GTATCC 1 cut(s) 394
BclI TGATCA 1 cut(s) 411
BcnI CCSGG 2 cut(s) 62, 521
BcoDI GTCTC 2 cut(s) 280, 516
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 4 cut(s) 199, 323, 582, 793
BlsI GCNGC 4 cut(s) 200, 324, 583, 794
Bme1390I CCNGG 4 cut(s) 62, 90, 521, 595
Bme18I GGWCC 2 cut(s) 4, 344
BmeT110I CYCGRG 1 cut(s) 587
BmgBI CACGTC 1 cut(s) 504
BmgT120I GGNCC 3 cut(s) 4, 344, 591
BmiI GGNNCC 5 cut(s) 86, 268, 346, 497, 592
BmrFI CCNGG 4 cut(s) 62, 90, 521, 595
BmsI GCATC 1 cut(s) 660
BpmI CTGGAG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 13
BpuMI CCSGG 2 cut(s) 62, 521
BsaAI YACGTR 1 cut(s) 553
BsaBI GATNNNNATC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 341, 469
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 2 cut(s) 40, 346
Bse8I GATNNNNATC 1 cut(s) 674
BseBI CCWGG 2 cut(s) 90, 595
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 3 cut(s) 66, 414, 675
BseJI GATNNNNATC 1 cut(s) 674
BseLI CCNNNNNNNGG 3 cut(s) 256, 341, 469
BseMII CTCAG 1 cut(s) 433
BseNI ACTGG 2 cut(s) 40, 346
BseRI GAGGAG 5 cut(s) 152, 227, 230, 233, 625
BseXI GCAGC 2 cut(s) 568, 804
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 4 cut(s) 104, 260, 593, 598
BsiHKCI CYCGRG 1 cut(s) 587
BsiSI CCGG 3 cut(s) 62, 101, 521
BslFI GGGAC 2 cut(s) 330, 556
BslI CCNNNNNNNGG 3 cut(s) 256, 341, 469
BsmAI GTCTC 2 cut(s) 280, 516
BsmFI GGGAC 2 cut(s) 330, 556
BsnI GGCC 4 cut(s) 104, 260, 593, 598
BsoBI CYCGRG 1 cut(s) 587
Bsp143I GATC 2 cut(s) 84, 411
BspACI CCGC 9 cut(s) 113, 182, 196, 199, 216, 323, 335, 423, 524
BspANI GGCC 4 cut(s) 104, 260, 593, 598
BspCNI CTCAG 1 cut(s) 432
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 5 cut(s) 86, 268, 346, 497, 592
BspPI GGATC 2 cut(s) 79, 92
BsrBI CCGCTC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 2 cut(s) 40, 346
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 84, 411
BssNAI GTATAC 1 cut(s) 564
Bst1107I GTATAC 1 cut(s) 564
Bst2UI CCWGG 2 cut(s) 90, 595
Bst4CI ACNGT 1 cut(s) 547
Bst6I CTCTTC 2 cut(s) 356, 602
BstBAI YACGTR 1 cut(s) 553
BstDEI CTNAG 2 cut(s) 271, 419
BstF5I GGATG 3 cut(s) 66, 414, 675
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 2 cut(s) 295, 586
BstKTI GATC 2 cut(s) 87, 414
BstMAI GTCTC 2 cut(s) 280, 516
BstMBI GATC 2 cut(s) 84, 411
BstMWI GCNNNNNNNGC 2 cut(s) 55, 590
BstNI CCWGG 2 cut(s) 90, 595
BstSCI CCNGG 4 cut(s) 60, 88, 519, 593
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 2 cut(s) 568, 804
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BstZ17I GTATAC 1 cut(s) 564
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 4 cut(s) 104, 260, 593, 598
BtrI CACGTC 1 cut(s) 504
BtsCI GGATG 3 cut(s) 66, 414, 675
CaiI CAGNNNCTG 2 cut(s) 439, 514
CfoI GCGC 2 cut(s) 295, 586
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 3 cut(s) 4, 344, 591
CseI GACGC 1 cut(s) 425
Csp6I GTAC 2 cut(s) 33, 364
CviAII CATG 7 cut(s) 13, 81, 256, 452, 481, 643, 766
CviQI GTAC 2 cut(s) 33, 364
DdeI CTNAG 2 cut(s) 271, 419
DpnI GATC 2 cut(s) 86, 413
DpnII GATC 2 cut(s) 84, 411
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 356, 602
EarI CTCTTC 2 cut(s) 356, 602
Eco47I GGWCC 2 cut(s) 4, 344
Eco72I CACGTG 1 cut(s) 553
Eco88I CYCGRG 1 cut(s) 587
EcoRII CCWGG 2 cut(s) 88, 593
FaeI CATG 7 cut(s) 16, 84, 259, 455, 484, 646, 769
FaqI GGGAC 2 cut(s) 330, 556
FatI CATG 7 cut(s) 12, 80, 255, 451, 480, 642, 765
FauI CCCGC 5 cut(s) 120, 189, 203, 342, 416
FbaI TGATCA 1 cut(s) 411
FblI GTMKAC 2 cut(s) 456, 563
Fnu4HI GCNGC 4 cut(s) 199, 323, 582, 793
FokI GGATG 3 cut(s) 53, 401, 682
Fsp4HI GCNGC 4 cut(s) 199, 323, 582, 793
GlaI GCGC 2 cut(s) 294, 585
GluI GCNGC 4 cut(s) 199, 323, 582, 793
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 4 cut(s) 104, 260, 593, 598
HapII CCGG 3 cut(s) 62, 101, 521
HgaI GACGC 1 cut(s) 425
HhaI GCGC 2 cut(s) 295, 586
Hin1II CATG 7 cut(s) 16, 84, 259, 455, 484, 646, 769
Hin6I GCGC 2 cut(s) 293, 584
HinP1I GCGC 2 cut(s) 293, 584
HindIII AAGCTT 1 cut(s) 649
HpaII CCGG 3 cut(s) 62, 101, 521
HphI GGTGA 5 cut(s) 64, 121, 205, 538, 628
Hpy166II GTNNAC 3 cut(s) 457, 550, 564
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 2 cut(s) 307, 409
Hpy8I GTNNAC 3 cut(s) 457, 550, 564
Hpy99I CGWCG 2 cut(s) 266, 508
HpyAV CCTTC 3 cut(s) 46, 229, 313
HpyCH4III ACNGT 1 cut(s) 547
HpyCH4IV ACGT 3 cut(s) 404, 503, 552
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 590
HpyF3I CTNAG 2 cut(s) 271, 419
HpySE526I ACGT 3 cut(s) 404, 503, 552
Hsp92II CATG 7 cut(s) 16, 84, 259, 455, 484, 646, 769
HspAI GCGC 2 cut(s) 293, 584
Ksp22I TGATCA 1 cut(s) 411
Kzo9I GATC 2 cut(s) 84, 411
LmnI GCTCC 2 cut(s) 501, 800
Lsp1109I GCAGC 2 cut(s) 568, 804
LweI GCATC 1 cut(s) 660
MaeII ACGT 3 cut(s) 404, 503, 552
MaeIII GTNAC 1 cut(s) 616
MalI GATC 2 cut(s) 86, 413
MbiI CCGCTC 1 cut(s) 184
MboI GATC 2 cut(s) 84, 411
MboII GAAGA 5 cut(s) 274, 343, 346, 361, 619
MflI RGATCY 1 cut(s) 84
MseI TTAA 1 cut(s) 729
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 423
MspI CCGG 3 cut(s) 62, 101, 521
MspR9I CCNGG 4 cut(s) 62, 90, 521, 595
MvaI CCWGG 2 cut(s) 90, 595
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 55, 590
NciI CCSGG 2 cut(s) 62, 521
NdeII GATC 2 cut(s) 84, 411
NlaIII CATG 7 cut(s) 16, 84, 259, 455, 484, 646, 769
NlaIV GGNNCC 5 cut(s) 86, 268, 346, 497, 592
NmuCI GTSAC 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 470
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PflMI CCANNNNNTGG 1 cut(s) 469
PkrI GCNGC 4 cut(s) 200, 324, 583, 794
PmaCI CACGTG 1 cut(s) 553
PmlI CACGTG 1 cut(s) 553
Ppu21I YACGTR 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 88, 593
PspCI CACGTG 1 cut(s) 553
PspGI CCWGG 2 cut(s) 88, 593
PspN4I GGNNCC 5 cut(s) 86, 268, 346, 497, 592
PspPI GGNCC 3 cut(s) 4, 344, 591
PstNI CAGNNNCTG 2 cut(s) 439, 514
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 2 cut(s) 34, 365
RsaNI GTAC 2 cut(s) 33, 364
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 4 cut(s) 199, 323, 582, 793
Sau3AI GATC 2 cut(s) 84, 411
Sau96I GGNCC 3 cut(s) 4, 344, 591
ScrFI CCNGG 4 cut(s) 62, 90, 521, 595
SfaNI GCATC 1 cut(s) 660
SinI GGWCC 2 cut(s) 4, 344
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SsiI CCGC 9 cut(s) 113, 182, 196, 199, 216, 323, 335, 423, 524
SspI AATATT 1 cut(s) 633
StyD4I CCNGG 4 cut(s) 60, 88, 519, 593
TaaI ACNGT 1 cut(s) 547
TaiI ACGT 3 cut(s) 407, 506, 555
TauI GCSGC 2 cut(s) 201, 325
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 2 cut(s) 581, 792
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 29, 631, 754
TspGWI ACGGA 1 cut(s) 635
Van91I CCANNNNNTGG 1 cut(s) 469
VpaK11BI GGWCC 2 cut(s) 4, 344
XmiI GTMKAC 2 cut(s) 456, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.