Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013056

Physical Location & Seq

Genomic Coordinates Reverse (-)

46283928 .. 46284743

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G567100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAACGCCATTTGGTCAACGCTCCAATACTGGCTGGTCAACCACCCATCCATCCTCCACTTCTCATGGGCTCCAGGCCAAACCCCAGCCTCCACCCCGCTCTTCCTCACTCTCTCTCTCCTCTCCTACCTCTCTCTCACCTTCCTCCTCACCCGCCTCCCGCTCTCCCCCATCAACCCTGCCCTCCTCAAACCAATCACAGCCGTCCACAACCTTCTCCTCTTCCTCCTCTCCCTCGTCATGGCCGTTGGATGCACCCTCTCGATCCTCTCCCCCGTAACCCCAAGCCTAGACTGGATCCTCTGCTTCCCACCCCATATTAACTCGACTGGGCCCCACTTCTTCTGGGCCTACATCTTCTACCTCTCAAAAATCCTCGAATTCCTCGACACCCTCTTCATCATCCTGAGTGGCTCCATCCAACGGCTGACCTTCCTCCACGTGTACCACCACGCGACCGTGCTGGTCATGTGCTACTTGTGGCTGCGCACGTGCCAGTCCTTGTTCCCGGTGGCGCTCGTGACCAACGCGTCGGTTCACGTGCTCATGTACGGATACTATTTCCTGTGTGCGGTTGGGATCCGACCCAAGTGGAAGAGGGTGGTGACGGACTGCCAGATCGTGCAGTTTTTGTTCAGCTTCGCGGTGTCGGGTCGTATGCTGTACCTGCATTTCTCCGGGTCGGGTTGCTCCGGGATATGGGGCTGGTGCTTCAATGCGGTCTTCAATGCCTCTCTTTTGGCTCTTTTCGTTGACTTTCACGTCAGGAGTTATGCCAAAAGAAAGAAAATGGGTCAAAAGGATAAAGGGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

272

Amino Acids

30.72

Weight (kDa)

9.42

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06460 AT3G06470
fragaria_vesca	FvH4_5g29630
malus_domestica	MD08G1227900.v1.1 MD15G1421700.v1.1 MD15G1421900.v1.1
prunus_persica	Prupe.1G567000_v2.0.a1 Prupe.1G567100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222681 RchiOBHm_Chr7g0222701
rosa_laevigata	RLG00000002032
rosa_roxburghii	Rroxscaffold_3G00236540 Rroxscaffold_3G00236550
rosa_rugosa	Rorug07G0212000 Rorug07G0212000
rosa_samantha	Rh7BG344500
rosa_wichuraiana	Rw7G030200 Rw7G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	529, 761
Acc16I	TGCGCA	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	675
AccBSI	CCGCTC	2 cut(s)	100, 163
AccII	CGCG	3 cut(s)	455, 530, 644
AciI	CCGC	6 cut(s)	98, 154, 161, 572, 644, 719
AclWI	GGATC	5 cut(s)	259, 292, 305, 574, 587
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	380
AcvI	CACGTG	3 cut(s)	442, 492, 541
AfaI	GTAC	3 cut(s)	446, 551, 665
AfiI	CCNNNNNNNGG	4 cut(s)	241, 423, 571, 699
AflIII	ACRYGT	2 cut(s)	441, 528
AgsI	TTSAA	2 cut(s)	715, 727
AjiI	CACGTC	1 cut(s)	763
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	1 cut(s)	639
AluI	AGCT	1 cut(s)	639
Alw21I	GWGCWC	1 cut(s)	546
AlwI	GGATC	5 cut(s)	259, 292, 305, 574, 587
AoxI	GGCC	4 cut(s)	76, 243, 332, 348
ApaI	GGGCCC	1 cut(s)	336
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	489, 517
AspS9I	GGNCC	4 cut(s)	332, 333, 348, 810
AsuC2I	CCSGG	3 cut(s)	509, 679, 694
AsuHPI	GGTGA	3 cut(s)	130, 142, 616
AvaII	GGWCC	1 cut(s)	810
BaeGI	GKGCMC	1 cut(s)	336
BamHI	GGATCC	2 cut(s)	297, 579
BanII	GRGCYC	2 cut(s)	73, 336
BauI	CACGAG	1 cut(s)	518
BbrPI	CACGTG	3 cut(s)	442, 492, 541
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	4 cut(s)	55, 59, 179, 425
BceAI	ACGGC	3 cut(s)	188, 230, 440
BciT130I	CCWGG	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	548
BcnI	CCSGG	3 cut(s)	509, 679, 694
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	675
BfuI	GTATCC	1 cut(s)	548
BisI	GCNGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	486
Bme1390I	CCNGG	4 cut(s)	75, 509, 679, 694
Bme18I	GGWCC	1 cut(s)	810
BmgBI	CACGTC	1 cut(s)	763
BmgT120I	GGNCC	4 cut(s)	332, 333, 348, 810
BmiI	GGNNCC	7 cut(s)	72, 299, 334, 335, 415, 581, 811
BmrFI	CCNGG	4 cut(s)	75, 509, 679, 694
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	715
BpmI	CTGGAG	1 cut(s)	57
BpuMI	CCSGG	3 cut(s)	509, 679, 694
BsaAI	YACGTR	3 cut(s)	442, 492, 541
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 423, 571, 699
Bse1I	ACTGG	4 cut(s)	35, 299, 334, 496
BseBI	CCWGG	1 cut(s)	75
BseGI	GGATG	5 cut(s)	47, 51, 257, 402, 417
BseLI	CCNNNNNNNGG	4 cut(s)	241, 423, 571, 699
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	4 cut(s)	35, 299, 334, 496
BseRI	GAGGAG	5 cut(s)	110, 137, 176, 209, 218
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	471
BseYI	CCCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	644
Bsh1236I	CGCG	3 cut(s)	455, 530, 644
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	4 cut(s)	78, 245, 334, 350
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	546
BsiSI	CCGG	3 cut(s)	509, 678, 693
BslI	CCNNNNNNNGG	4 cut(s)	241, 423, 571, 699
BsnI	GGCC	4 cut(s)	78, 245, 334, 350
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	73, 336, 546
Bsp143I	GATC	4 cut(s)	264, 297, 579, 618
BspACI	CCGC	6 cut(s)	98, 154, 161, 572, 644, 719
BspANI	GGCC	4 cut(s)	78, 245, 334, 350
BspCNI	CTCAG	1 cut(s)	399
BspFNI	CGCG	3 cut(s)	455, 530, 644
BspLI	GGNNCC	7 cut(s)	72, 299, 334, 335, 415, 581, 811
BspMI	ACCTGC	1 cut(s)	675
BspPI	GGATC	5 cut(s)	259, 292, 305, 574, 587
BspQI	GCTCTTC	1 cut(s)	107
BsrBI	CCGCTC	2 cut(s)	100, 163
BsrI	ACTGG	4 cut(s)	35, 299, 334, 496
BssMI	GATC	4 cut(s)	264, 297, 579, 618
BssSI	CACGAG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	4 cut(s)	107, 227, 401, 590
BstBAI	YACGTR	3 cut(s)	442, 492, 541
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	5 cut(s)	47, 51, 257, 402, 417
BstFNI	CGCG	3 cut(s)	455, 530, 644
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	489, 517
BstKTI	GATC	4 cut(s)	267, 300, 582, 621
BstMBI	GATC	4 cut(s)	264, 297, 579, 618
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	1 cut(s)	667
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	4 cut(s)	73, 507, 677, 692
BstSLI	GKGCMC	1 cut(s)	336
BstUI	CGCG	3 cut(s)	455, 530, 644
BstV1I	GCAGC	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	2 cut(s)	297, 579
BstYI	RGATCY	2 cut(s)	297, 579
BsuI	GTATCC	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	78, 245, 334, 350
BtrI	CACGTC	1 cut(s)	763
BtsCI	GGATG	5 cut(s)	47, 51, 257, 402, 417
BveI	ACCTGC	1 cut(s)	675
CfoI	GCGC	2 cut(s)	489, 517
Cfr13I	GGNCC	4 cut(s)	332, 333, 348, 810
CseI	GACGC	1 cut(s)	519
Csp6I	GTAC	3 cut(s)	445, 550, 664
CviAII	CATG	4 cut(s)	66, 241, 469, 547
CviQI	GTAC	3 cut(s)	445, 550, 664
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	4 cut(s)	266, 299, 581, 620
DpnII	GATC	4 cut(s)	264, 297, 579, 618
DrdI	GACNNNNNNGTC	2 cut(s)	529, 761
DseDI	GACNNNNNNGTC	2 cut(s)	529, 761
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	4 cut(s)	107, 227, 401, 590
EarI	CTCTTC	4 cut(s)	107, 227, 401, 590
Eco24I	GRGCYC	2 cut(s)	73, 336
Eco47I	GGWCC	1 cut(s)	810
Eco72I	CACGTG	3 cut(s)	442, 492, 541
EcoO109I	RGGNCCY	2 cut(s)	333, 810
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	73
EcoT38I	GRGCYC	2 cut(s)	73, 336
FaeI	CATG	4 cut(s)	69, 244, 472, 550
FaiI	YATR	8 cut(s)	67, 242, 318, 470, 548, 659, 700, 774
FatI	CATG	4 cut(s)	65, 240, 468, 546
FauI	CCCGC	3 cut(s)	105, 161, 168
Fnu4HI	GCNGC	1 cut(s)	485
FokI	GGATG	5 cut(s)	34, 38, 264, 389, 404
FriOI	GRGCYC	2 cut(s)	73, 336
Fsp4HI	GCNGC	1 cut(s)	485
FspBI	CTAG	1 cut(s)	290
FspI	TGCGCA	1 cut(s)	488
GlaI	GCGC	2 cut(s)	488, 516
GluI	GCNGC	1 cut(s)	485
GsaI	CCCAGC	1 cut(s)	89
GsuI	CTGGAG	1 cut(s)	57
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	4 cut(s)	78, 245, 334, 350
HapII	CCGG	3 cut(s)	509, 678, 693
HgaI	GACGC	1 cut(s)	519
HhaI	GCGC	2 cut(s)	489, 517
Hin1II	CATG	4 cut(s)	69, 244, 472, 550
Hin6I	GCGC	2 cut(s)	487, 515
HinP1I	GCGC	2 cut(s)	487, 515
HincII	GTYRAC	3 cut(s)	18, 40, 754
HindII	GTYRAC	3 cut(s)	18, 40, 754
HpaII	CCGG	3 cut(s)	509, 678, 693
HphI	GGTGA	3 cut(s)	130, 142, 616
Hpy166II	GTNNAC	6 cut(s)	18, 40, 208, 445, 538, 754
Hpy188I	TCNGA	1 cut(s)	584
Hpy188III	TCNNGA	5 cut(s)	262, 406, 520, 766, 813
Hpy8I	GTNNAC	6 cut(s)	18, 40, 208, 445, 538, 754
Hpy99I	CGWCG	1 cut(s)	535
HpyAV	CCTTC	3 cut(s)	151, 224, 442
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	4 cut(s)	441, 491, 540, 762
HpyCH4V	TGCA	3 cut(s)	255, 625, 670
HpyF10VI	GCNNNNNNNGC	1 cut(s)	667
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	4 cut(s)	441, 491, 540, 762
Hsp92II	CATG	4 cut(s)	69, 244, 472, 550
HspAI	GCGC	2 cut(s)	487, 515
Kzo9I	GATC	4 cut(s)	264, 297, 579, 618
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	4 cut(s)	27, 76, 419, 695
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	4 cut(s)	441, 491, 540, 762
MaeIII	GTNAC	3 cut(s)	277, 520, 604
MalI	GATC	4 cut(s)	266, 299, 581, 620
MbiI	CCGCTC	2 cut(s)	100, 163
MboI	GATC	4 cut(s)	264, 297, 579, 618
MboII	GAAGA	7 cut(s)	94, 214, 334, 349, 388, 607, 715
MflI	RGATCY	2 cut(s)	297, 579
MhlI	GDGCHC	3 cut(s)	73, 336, 546
MluCI	AATT	1 cut(s)	380
MluI	ACGCGT	1 cut(s)	528
MmeI	TCCRAC	3 cut(s)	229, 445, 607
MseI	TTAA	1 cut(s)	321
MspI	CCGG	3 cut(s)	509, 678, 693
MspR9I	CCNGG	4 cut(s)	75, 509, 679, 694
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	3 cut(s)	455, 530, 644
MwoI	GCNNNNNNNGC	1 cut(s)	667
NciI	CCSGG	3 cut(s)	509, 679, 694
NdeII	GATC	4 cut(s)	264, 297, 579, 618
NlaIII	CATG	4 cut(s)	69, 244, 472, 550
NlaIV	GGNNCC	7 cut(s)	72, 299, 334, 335, 415, 581, 811
NmuCI	GTSAC	2 cut(s)	520, 604
NsbI	TGCGCA	1 cut(s)	488
PciSI	GCTCTTC	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 384
PfoI	TCCNGGA	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	486
PmaCI	CACGTG	3 cut(s)	442, 492, 541
PmlI	CACGTG	3 cut(s)	442, 492, 541
Ppu21I	YACGTR	3 cut(s)	442, 492, 541
PpuMI	RGGWCCY	1 cut(s)	810
Psp5II	RGGWCCY	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	73
PspCI	CACGTG	3 cut(s)	442, 492, 541
PspFI	CCCAGC	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	7 cut(s)	72, 299, 334, 335, 415, 581, 811
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	4 cut(s)	332, 333, 348, 810
PspPPI	RGGWCCY	1 cut(s)	810
PsuI	RGATCY	2 cut(s)	297, 579
RsaI	GTAC	3 cut(s)	446, 551, 665
RsaNI	GTAC	3 cut(s)	445, 550, 664
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	1 cut(s)	485
Sau3AI	GATC	4 cut(s)	264, 297, 579, 618
Sau96I	GGNCC	4 cut(s)	332, 333, 348, 810
ScrFI	CCNGG	4 cut(s)	75, 509, 679, 694
SduI	GDGCHC	3 cut(s)	73, 336, 546
SfaNI	GCATC	1 cut(s)	242
SinI	GGWCC	1 cut(s)	810
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	6 cut(s)	98, 154, 161, 572, 644, 719
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	4 cut(s)	73, 507, 677, 692
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	4 cut(s)	444, 494, 543, 765
TaqI	TCGA	4 cut(s)	263, 326, 378, 387
TasI	AATT	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TseFI	GTSAC	2 cut(s)	520, 604
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	2 cut(s)	520, 604
TspDTI	ATGAA	2 cut(s)	17, 388
TspGWI	ACGGA	2 cut(s)	567, 623
VpaK11BI	GGWCC	1 cut(s)	810
XapI	RAATTY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.