MD08G1227900.v1.1

elongation of fatty acids protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0013056
Physical Location & Seq
Reverse (-)
29425402 .. 29426246
845 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1227900.v1.1.491

Sequence Viewer

Length: 798 bp
ATGAACCTCAACATCTCAAGTACCTTCCAGTATTGGTTGGTGAAGCACCCAGTGATCCTCCACTTCTCATGGAGCCCTGGAGAAACGCCGGCCTCCTCCCCGCTTTTTCTCACTCTCACCATCATTTCCTACCTTGCCCTCACTTTCCTCCTTTCCCACCTCCCTCTCCCCCTCATCAAACCCCGCCGCCTCAAACCTATCACCGCCTTCCACAACCTCAACCTCCTCCTCCTCTCCCTCGTCATGGCCGTCGGTTCCTTGGTCACCATCTTTTCCTACGCGCCCTACCCCTTCTGGATCATCTGCTTCCCGCCCAAAACCCCGCCAACCGGGCCTCTCTTCTTCTGGGCGTACATTTTCTACCTCTCCAAAATCTACGAGTTCGTGGACACGTTCCTTATCATCCTCAGCGGGAGTTTCCAGCGGCTGACATTCCTCCACGTTTACCACCACACCATGGTGCTGGTCATGTGCTACATTTGGCTCCACACATCGCAGTCTCTGTTCCCGGCGGTGATCGTAGCAAATGCGACGGTTCACGTGGTGATGTATACCTACTACTTGTTGGCTGCGCTAGGGGCGAGGCCAAAGTGGAAGAGAAGGGTGACCGAGTTTCAGATATTTCAGTTCATGTCAAGCTTTATTGGGTTGGTCTGGATGCTCATCTACCATTTCAATGGTTCTGGTTGCTGTGGGATCTGGGGTTGGTGCTTCAACATTTTTTTCTATGTTTCCCTTTTGGCTTTGTTCATGGACTTCCATCAGAAGAGTTATGGAAGCTCCAAGAAAGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ELO

Protein Analysis

266

Amino Acids

30.76

Weight (kDa)

9.43

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 30 - 263 6.8e-55 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 457
AccI GTMKAC 1 cut(s) 551
AccII CGCG 1 cut(s) 281
AciI CCGC 9 cut(s) 101, 184, 187, 204, 311, 323, 411, 424, 512
AclWI GGATC 3 cut(s) 49, 305, 704
AcoI YGGCCR 1 cut(s) 246
AcvI CACGTG 1 cut(s) 541
AdeI CACNNNGTG 2 cut(s) 52, 544
AfaI GTAC 2 cut(s) 22, 353
AfiI CCNNNNNNNGG 3 cut(s) 244, 329, 457
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 2 cut(s) 676, 715
AjnI CCWGG 1 cut(s) 76
AleI CACNNNNGTG 1 cut(s) 458
AluBI AGCT 2 cut(s) 639, 780
AluI AGCT 2 cut(s) 639, 780
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 3 cut(s) 49, 305, 704
AlwNI CAGNNNCTG 2 cut(s) 427, 502
AoxI GGCC 4 cut(s) 90, 246, 332, 584
ApeKI GCWGC 1 cut(s) 569
AspLEI GCGC 2 cut(s) 283, 574
AspS9I GGNCC 1 cut(s) 332
AsuC2I CCSGG 2 cut(s) 331, 509
AsuHPI GGTGA 7 cut(s) 52, 109, 193, 256, 526, 556, 616
BanII GRGCYC 1 cut(s) 77
BbrPI CACGTG 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 407
BbvI GCAGC 1 cut(s) 556
BccI CCATC 3 cut(s) 128, 275, 768
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 2 cut(s) 331, 509
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 331
BisI GCNGC 3 cut(s) 187, 425, 570
BlsI GCNGC 3 cut(s) 188, 426, 571
Bme1390I CCNGG 3 cut(s) 78, 331, 509
BmgT120I GGNCC 1 cut(s) 332
BmiI GGNNCC 3 cut(s) 74, 256, 485
BmrFI CCNGG 3 cut(s) 78, 331, 509
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 1 cut(s) 648
BmuI ACTGGG 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 99
Bpu10I CCTNAGC 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 331, 509
BsaAI YACGTR 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 662
BsaJI CCNNGG 3 cut(s) 76, 258, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 244, 329, 457
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 28, 50
Bse8I GATNNNNATC 1 cut(s) 662
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 76, 258, 456
BseGI GGATG 2 cut(s) 402, 663
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 3 cut(s) 244, 329, 457
BseMII CTCAG 1 cut(s) 421
BseNI ACTGG 2 cut(s) 28, 50
BseRI GAGGAG 4 cut(s) 85, 215, 218, 221
BseXI GCAGC 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 4 cut(s) 92, 248, 334, 586
BsiSI CCGG 3 cut(s) 89, 330, 509
BslI CCNNNNNNNGG 3 cut(s) 244, 329, 457
BsmAI GTCTC 1 cut(s) 504
BsnI GGCC 4 cut(s) 92, 248, 334, 586
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 4 cut(s) 54, 297, 516, 696
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 9 cut(s) 101, 184, 187, 204, 311, 323, 411, 424, 512
BspANI GGCC 4 cut(s) 92, 248, 334, 586
BspCNI CTCAG 1 cut(s) 420
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 3 cut(s) 74, 256, 485
BspPI GGATC 3 cut(s) 49, 305, 704
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 2 cut(s) 28, 50
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 3 cut(s) 76, 258, 456
BssMI GATC 4 cut(s) 54, 297, 516, 696
BssNAI GTATAC 1 cut(s) 552
BssT1I CCWWGG 2 cut(s) 258, 456
Bst1107I GTATAC 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 3 cut(s) 344, 590, 761
BstBAI YACGTR 1 cut(s) 541
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 407
BstDSI CCRYGG 1 cut(s) 456
BstEII GGTNACC 2 cut(s) 262, 604
BstF5I GGATG 2 cut(s) 402, 663
BstFNI CGCG 1 cut(s) 281
BstHHI GCGC 2 cut(s) 283, 574
BstKTI GATC 4 cut(s) 57, 300, 519, 699
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 4 cut(s) 54, 297, 516, 696
BstMWI GCNNNNNNNGC 2 cut(s) 331, 578
BstNI CCWGG 1 cut(s) 78
BstPI GGTNACC 2 cut(s) 262, 604
BstSCI CCNGG 3 cut(s) 76, 329, 507
BstUI CGCG 1 cut(s) 281
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 1 cut(s) 696
BstXI CCANNNNNNTGG 2 cut(s) 463, 677
BstYI RGATCY 1 cut(s) 696
BstZ17I GTATAC 1 cut(s) 552
BsuRI GGCC 4 cut(s) 92, 248, 334, 586
BtgI CCRYGG 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 477
BtsCI GGATG 2 cut(s) 402, 663
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 2 cut(s) 427, 502
CfoI GCGC 2 cut(s) 283, 574
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 21, 352
CviAII CATG 6 cut(s) 69, 244, 457, 469, 631, 751
CviQI GTAC 2 cut(s) 21, 352
DdeI CTNAG 1 cut(s) 407
DpnI GATC 4 cut(s) 56, 299, 518, 698
DpnII GATC 4 cut(s) 54, 297, 516, 696
DraIII CACNNNGTG 2 cut(s) 52, 544
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 3 cut(s) 344, 590, 761
EarI CTCTTC 3 cut(s) 344, 590, 761
Eco130I CCWWGG 2 cut(s) 258, 456
Eco24I GRGCYC 1 cut(s) 77
Eco72I CACGTG 1 cut(s) 541
Eco91I GGTNACC 2 cut(s) 262, 604
EcoO65I GGTNACC 2 cut(s) 262, 604
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 258, 456
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 2 cut(s) 258, 456
FaeI CATG 6 cut(s) 72, 247, 460, 472, 634, 754
FaiI YATR 9 cut(s) 70, 245, 458, 470, 552, 632, 729, 752, 774
FatI CATG 6 cut(s) 68, 243, 456, 468, 630, 750
FauI CCCGC 5 cut(s) 108, 191, 318, 330, 404
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 3 cut(s) 187, 425, 570
FokI GGATG 2 cut(s) 389, 670
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 3 cut(s) 187, 425, 570
FspBI CTAG 1 cut(s) 575
GlaI GCGC 2 cut(s) 282, 573
GluI GCNGC 3 cut(s) 187, 425, 570
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 4 cut(s) 92, 248, 334, 586
HapII CCGG 3 cut(s) 89, 330, 509
HhaI GCGC 2 cut(s) 283, 574
Hin1II CATG 6 cut(s) 72, 247, 460, 472, 634, 754
Hin6I GCGC 2 cut(s) 281, 572
HinP1I GCGC 2 cut(s) 281, 572
HindIII AAGCTT 1 cut(s) 637
HpaII CCGG 3 cut(s) 89, 330, 509
HphI GGTGA 7 cut(s) 52, 109, 193, 256, 526, 556, 616
Hpy166II GTNNAC 4 cut(s) 388, 445, 538, 552
Hpy188I TCNGA 2 cut(s) 618, 765
Hpy188III TCNNGA 2 cut(s) 295, 655
Hpy8I GTNNAC 4 cut(s) 388, 445, 538, 552
Hpy99I CGWCG 2 cut(s) 254, 535
HpyAV CCTTC 4 cut(s) 34, 217, 301, 594
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 3 cut(s) 392, 441, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 331, 578
HpyF3I CTNAG 1 cut(s) 407
HpySE526I ACGT 3 cut(s) 392, 441, 540
Hsp92II CATG 6 cut(s) 72, 247, 460, 472, 634, 754
HspAI GCGC 2 cut(s) 281, 572
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 54, 297, 516, 696
LmnI GCTCC 3 cut(s) 72, 489, 785
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 1 cut(s) 648
MaeI CTAG 1 cut(s) 575
MaeII ACGT 3 cut(s) 392, 441, 540
MaeIII GTNAC 2 cut(s) 262, 604
MalI GATC 4 cut(s) 56, 299, 518, 698
MboI GATC 4 cut(s) 54, 297, 516, 696
MboII GAAGA 4 cut(s) 331, 334, 607, 778
MflI RGATCY 1 cut(s) 696
MhlI GDGCHC 1 cut(s) 77
MroNI GCCGGC 1 cut(s) 88
MslI CAYNNNNRTG 2 cut(s) 458, 675
MspA1I CMGCKG 2 cut(s) 411, 424
MspI CCGG 3 cut(s) 89, 330, 509
MspR9I CCNGG 3 cut(s) 78, 331, 509
MvaI CCWGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 331, 578
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 2 cut(s) 331, 509
NcoI CCATGG 1 cut(s) 456
NdeII GATC 4 cut(s) 54, 297, 516, 696
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 6 cut(s) 72, 247, 460, 472, 634, 754
NlaIV GGNNCC 3 cut(s) 74, 256, 485
NmuCI GTSAC 2 cut(s) 262, 604
OliI CACNNNNGTG 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdiI GCCGGC 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 3 cut(s) 188, 426, 571
PmaCI CACGTG 1 cut(s) 541
PmlI CACGTG 1 cut(s) 541
Ppu21I YACGTR 1 cut(s) 541
Psp6I CCWGG 1 cut(s) 76
PspCI CACGTG 1 cut(s) 541
PspEI GGTNACC 2 cut(s) 262, 604
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 3 cut(s) 74, 256, 485
PspPI GGNCC 1 cut(s) 332
PstNI CAGNNNCTG 2 cut(s) 427, 502
PsuI RGATCY 1 cut(s) 696
RsaI GTAC 2 cut(s) 22, 353
RsaNI GTAC 2 cut(s) 21, 352
RseI CAYNNNNRTG 2 cut(s) 458, 675
SatI GCNGC 3 cut(s) 187, 425, 570
Sau3AI GATC 4 cut(s) 54, 297, 516, 696
Sau96I GGNCC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 78, 331, 509
SduI GDGCHC 1 cut(s) 77
SfaNI GCATC 1 cut(s) 648
SmiMI CAYNNNNRTG 2 cut(s) 458, 675
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
SsiI CCGC 9 cut(s) 101, 184, 187, 204, 311, 323, 411, 424, 512
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 76, 329, 507
StyI CCWWGG 2 cut(s) 258, 456
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 3 cut(s) 395, 444, 543
TaqII GACCGA 1 cut(s) 623
TauI GCSGC 2 cut(s) 189, 427
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 2 cut(s) 262, 604
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 2 cut(s) 262, 604
TspDTI ATGAA 3 cut(s) 17, 619, 739
TspRI CASTG 1 cut(s) 57
Van91I CCANNNNNTGG 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 551
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.