Rw7G030210

elongation of fatty acids protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013056
Physical Location & Seq
Forward (+)
42765143 .. 42766172
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030210.1

Sequence Viewer

Length: 807 bp
ATGGAGGGAAACGTGACCATCAAGAGTACTTTCCAATACTGGCTGGTTAAGCACCCAACAATCCTCAACTTCAAGTGGAGCCCGGGGGAAACTCCCTGCTCTACTCCACTCTTCCTGGCCGTCACGGTCATCTCTTACCTCGCCTTGACTCTGCTTCTCTCCAACATCCCTCTCCCGCTCATCAAGCCCCGCCGCCTCAAGCCGGTCACGGTCGTTCACAACCTCATCCTGCTGGTGTTGTCACTCATCATGTCCGTGGGTTCGTTTGTCACCATCTTCTCCCACGCTCCCCACCCCTTCTGGATCATCTGCCTGCCACCCAAAACCCCGCCAACTGGTCCCCTCTTCTTCTGGGCGTACATCTTCTACCTCTCCAAAATCTACGAGTTCGTCGACACCCTCCTCATCATCGTCAGCGGCTCCTTCCACCGCCTCACCTTCCTCCACGTGTACCACCACACCATGGTGCTGGTCATGTGCTACATCTGGCTCCACACCTCCCAGTCTCTCTTCCCGGCCGTCATCGTCGCCAACGCCACCGTCCACGTAGTCATGTACACTTACTACCTGCTGTCGAGTCTCGGAGGAAGGCCCAAGTGGAAGAGATGCGTGACCGAGTTTCAGATATTTCAGTTCATGAGCAGCTTCATAGGGTTGGTGTGGATGCTCTACTATCATTTCAACAGGGATTGTGGTTGCTCTGGGATCTGGGGATGGTGCTTCAACATTTTCTTCTATGTTTCTCTTCTGCTTTTGTTCATGGACTTCCATTCCAAGAGTTATGGTACCTCCAAGAAAGATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ELO

Protein Analysis

268

Amino Acids

31.06

Weight (kDa)

9.3

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELO PF01151 33 - 266 1.5e-54 GNS1/SUR4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 576
Acc65I GGTACC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 785
AccB7I CCANNNNNTGG 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 178
AccI GTMKAC 1 cut(s) 393
AciI CCGC 6 cut(s) 176, 190, 193, 329, 417, 430
AclWI GGATC 2 cut(s) 311, 713
AcoI YGGCCR 2 cut(s) 117, 516
AcvI CACGTG 1 cut(s) 448
AfaI GTAC 5 cut(s) 28, 359, 452, 557, 787
AfiI CCNNNNNNNGG 3 cut(s) 202, 335, 463
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 3 cut(s) 73, 682, 724
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 1 cut(s) 785
AleI CACNNNNGTG 1 cut(s) 464
AluBI AGCT 1 cut(s) 645
AluI AGCT 1 cut(s) 645
Alw26I GTCTC 2 cut(s) 510, 584
AlwI GGATC 2 cut(s) 311, 713
Ama87I CYCGRG 1 cut(s) 82
AoxI GGCC 3 cut(s) 117, 516, 590
ApeKI GCWGC 1 cut(s) 642
Asp700I GAANNNNTTC 1 cut(s) 800
Asp718I GGTACC 1 cut(s) 785
AspS9I GGNCC 2 cut(s) 338, 591
AsuC2I CCSGG 3 cut(s) 83, 84, 515
AsuHPI GGTGA 2 cut(s) 262, 427
AvaI CYCGRG 1 cut(s) 82
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 83
BbrPI CACGTG 1 cut(s) 448
BbvI GCAGC 1 cut(s) 654
BccI CCATC 3 cut(s) 26, 281, 708
BceAI ACGGC 2 cut(s) 104, 503
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 3 cut(s) 83, 84, 515
BcoDI GTCTC 2 cut(s) 510, 584
BfaI CTAG 1 cut(s) 805
BfuAI ACCTGC 1 cut(s) 576
BisI GCNGC 3 cut(s) 193, 418, 643
BlsI GCNGC 3 cut(s) 194, 419, 644
BmcAI AGTACT 1 cut(s) 28
Bme1390I CCNGG 4 cut(s) 83, 84, 116, 515
Bme18I GGWCC 1 cut(s) 338
BmeT110I CYCGRG 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 338, 591
BmiI GGNNCC 5 cut(s) 80, 340, 421, 491, 787
BmrFI CCNGG 4 cut(s) 83, 84, 116, 515
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 2 cut(s) 596, 654
BmuI ACTGGG 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 3 cut(s) 83, 84, 515
BsaAI YACGTR 2 cut(s) 448, 547
BsaJI CCNNGG 4 cut(s) 82, 83, 255, 462
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 335, 463
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 3 cut(s) 44, 340, 502
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 4 cut(s) 82, 83, 255, 462
BseGI GGATG 4 cut(s) 165, 225, 669, 719
BseLI CCNNNNNNNGG 3 cut(s) 202, 335, 463
BseNI ACTGG 3 cut(s) 44, 340, 502
BseRI GAGGAG 1 cut(s) 392
BseX3I CGGCCG 1 cut(s) 516
BseXI GCAGC 1 cut(s) 654
Bsh1285I CGRYCG 2 cut(s) 213, 519
BshFI GGCC 3 cut(s) 119, 518, 592
BshNI GGYRCC 1 cut(s) 785
BsiEI CGRYCG 2 cut(s) 213, 519
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 3 cut(s) 83, 203, 515
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 202, 335, 463
BsmAI GTCTC 2 cut(s) 510, 584
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 3 cut(s) 119, 518, 592
BsoBI CYCGRG 1 cut(s) 82
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 2 cut(s) 303, 705
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 6 cut(s) 176, 190, 193, 329, 417, 430
BspANI GGCC 3 cut(s) 119, 518, 592
BspHI TCATGA 1 cut(s) 636
BspLI GGNNCC 5 cut(s) 80, 340, 421, 491, 787
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 2 cut(s) 311, 713
BspT107I GGYRCC 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 178
BsrFI RCCGGY 1 cut(s) 202
BsrGI TGTACA 1 cut(s) 555
BsrI ACTGG 3 cut(s) 44, 340, 502
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 4 cut(s) 82, 83, 255, 462
BssMI GATC 2 cut(s) 303, 705
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 127, 211, 541
Bst6I CTCTTC 5 cut(s) 116, 350, 515, 596, 750
BstAUI TGTACA 1 cut(s) 555
BstBAI YACGTR 2 cut(s) 448, 547
BstC8I GCNNGC 1 cut(s) 314
BstDSI CCRYGG 2 cut(s) 255, 462
BstF5I GGATG 4 cut(s) 165, 225, 669, 719
BstKTI GATC 2 cut(s) 306, 708
BstMAI GTCTC 2 cut(s) 510, 584
BstMBI GATC 2 cut(s) 303, 705
BstMCI CGRYCG 2 cut(s) 213, 519
BstMWI GCNNNNNNNGC 2 cut(s) 49, 184
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 4 cut(s) 81, 82, 114, 513
BstV1I GCAGC 1 cut(s) 654
BstX2I RGATCY 1 cut(s) 705
BstXI CCANNNNNNTGG 1 cut(s) 469
BstYI RGATCY 1 cut(s) 705
BstZI CGGCCG 1 cut(s) 516
BsuRI GGCC 3 cut(s) 119, 518, 592
BtgI CCRYGG 2 cut(s) 255, 462
BtsCI GGATG 4 cut(s) 165, 225, 669, 719
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 314
CciI TCATGA 1 cut(s) 636
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 338, 591
Cfr9I CCCGGG 1 cut(s) 82
Csp6I GTAC 5 cut(s) 27, 358, 451, 556, 786
CviAII CATG 6 cut(s) 250, 463, 475, 553, 637, 760
CviQI GTAC 5 cut(s) 27, 358, 451, 556, 786
DpnI GATC 2 cut(s) 305, 707
DpnII GATC 2 cut(s) 303, 705
EaeI YGGCCR 2 cut(s) 117, 516
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 5 cut(s) 116, 350, 515, 596, 750
EarI CTCTTC 5 cut(s) 116, 350, 515, 596, 750
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 338
Eco52I CGGCCG 1 cut(s) 516
Eco72I CACGTG 1 cut(s) 448
Eco88I CYCGRG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 6 cut(s) 253, 466, 478, 556, 640, 763
FaiI YATR 9 cut(s) 251, 464, 476, 554, 638, 650, 738, 761, 783
FaqI GGGAC 1 cut(s) 324
FatI CATG 6 cut(s) 249, 462, 474, 552, 636, 759
FauI CCCGC 3 cut(s) 183, 197, 336
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 193, 418, 643
FokI GGATG 4 cut(s) 152, 212, 676, 726
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 193, 418, 643
FspBI CTAG 1 cut(s) 805
GluI GCNGC 3 cut(s) 193, 418, 643
HaeIII GGCC 3 cut(s) 119, 518, 592
HapII CCGG 3 cut(s) 83, 203, 515
Hin1II CATG 6 cut(s) 253, 466, 478, 556, 640, 763
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 2 cut(s) 148, 577
HpaII CCGG 3 cut(s) 83, 203, 515
HphI GGTGA 2 cut(s) 262, 427
Hpy166II GTNNAC 5 cut(s) 217, 394, 451, 544, 558
Hpy188I TCNGA 2 cut(s) 584, 624
Hpy188III TCNNGA 3 cut(s) 22, 301, 637
Hpy8I GTNNAC 5 cut(s) 217, 394, 451, 544, 558
Hpy99I CGWCG 2 cut(s) 395, 530
HpyAV CCTTC 4 cut(s) 307, 433, 448, 582
HpyCH4III ACNGT 3 cut(s) 127, 211, 541
HpyCH4IV ACGT 3 cut(s) 12, 447, 546
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 184
HpySE526I ACGT 3 cut(s) 12, 447, 546
Hsp92II CATG 6 cut(s) 253, 466, 478, 556, 640, 763
KpnI GGTACC 1 cut(s) 789
Kzo9I GATC 2 cut(s) 303, 705
LmnI GCTCC 4 cut(s) 78, 292, 425, 495
Lsp1109I GCAGC 1 cut(s) 654
LweI GCATC 2 cut(s) 596, 654
MaeI CTAG 1 cut(s) 805
MaeII ACGT 3 cut(s) 12, 447, 546
MaeIII GTNAC 6 cut(s) 13, 121, 205, 240, 268, 610
MalI GATC 2 cut(s) 305, 707
MbiI CCGCTC 1 cut(s) 178
MboI GATC 2 cut(s) 303, 705
MboII GAAGA 9 cut(s) 103, 268, 337, 340, 355, 502, 613, 724, 737
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 83
MlyI GAGTC 2 cut(s) 142, 586
MmeI TCCRAC 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 2 cut(s) 254, 464
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 3 cut(s) 83, 203, 515
MspR9I CCNGG 4 cut(s) 83, 84, 116, 515
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 49, 184
NciI CCSGG 3 cut(s) 83, 84, 515
NcoI CCATGG 1 cut(s) 462
NdeII GATC 2 cut(s) 303, 705
NlaIII CATG 6 cut(s) 253, 466, 478, 556, 640, 763
NlaIV GGNNCC 5 cut(s) 80, 340, 421, 491, 787
NmuCI GTSAC 6 cut(s) 13, 121, 205, 240, 268, 610
OliI CACNNNNGTG 1 cut(s) 464
PagI TCATGA 1 cut(s) 636
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 800
PflMI CCANNNNNTGG 1 cut(s) 463
PkrI GCNGC 3 cut(s) 194, 419, 644
PleI GAGTC 2 cut(s) 142, 585
PmaCI CACGTG 1 cut(s) 448
PmlI CACGTG 1 cut(s) 448
PpsI GAGTC 2 cut(s) 142, 585
Ppu21I YACGTR 2 cut(s) 448, 547
Psp6I CCWGG 1 cut(s) 114
PspCI CACGTG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 5 cut(s) 80, 340, 421, 491, 787
PspPI GGNCC 2 cut(s) 338, 591
PsuI RGATCY 1 cut(s) 705
RsaI GTAC 5 cut(s) 28, 359, 452, 557, 787
RsaNI GTAC 5 cut(s) 27, 358, 451, 556, 786
RseI CAYNNNNRTG 2 cut(s) 254, 464
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 3 cut(s) 193, 418, 643
Sau3AI GATC 2 cut(s) 303, 705
Sau96I GGNCC 2 cut(s) 338, 591
ScaI AGTACT 1 cut(s) 28
SchI GAGTC 2 cut(s) 142, 586
ScrFI CCNGG 4 cut(s) 83, 84, 116, 515
SduI GDGCHC 1 cut(s) 83
SfaNI GCATC 2 cut(s) 596, 654
SinI GGWCC 1 cut(s) 338
SmaI CCCGGG 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 254, 464
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SsiI CCGC 6 cut(s) 176, 190, 193, 329, 417, 430
SspMI CTAG 1 cut(s) 805
StyD4I CCNGG 4 cut(s) 81, 82, 114, 513
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 3 cut(s) 127, 211, 541
TaiI ACGT 3 cut(s) 15, 450, 549
TaqI TCGA 2 cut(s) 393, 575
TaqII GACCGA 1 cut(s) 629
TatI WGTACW 2 cut(s) 26, 555
TauI GCSGC 2 cut(s) 195, 420
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseFI GTSAC 6 cut(s) 13, 121, 205, 240, 268, 610
TseI GCWGC 1 cut(s) 642
Tsp45I GTSAC 6 cut(s) 13, 121, 205, 240, 268, 610
TspDTI ATGAA 3 cut(s) 625, 637, 748
TspGWI ACGGA 1 cut(s) 244
TspMI CCCGGG 1 cut(s) 82
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 338
XmaI CCCGGG 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 1 cut(s) 805
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.