Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013056

Physical Location & Seq

Genomic Coordinates Forward (+)

42706618 .. 42707396

Gene Structure 779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAAGTCAAACCTCCAATACTGGCTAGTTGAGCACCCAAGCATCCTCCACTTCTCATGGACGGAGGGTCAAACCCCTGCCTCCACCCCACTCTTCCTCATCCTCGCCCTCCTCTCCTATCTCTCCCTCACGCTCCTCCTCACGCCCCTCCACAACCTCACCCTCCTCCTCCTCTCCCTCATCATGGCCGTCGCTTGCACCCTCTCCATCCTCTCCTCCCCTTCCTCCACCCTCTGCTTCTCCCCCCACACCAACCCCACCGGGCCCCTCTTCTTCTGGGCCTACGTCTTCTACCTCTCCAAGATCCTCGAACTCCTCGACACCCTCTTCATCATCCTCAGTGGCTCCCTCCGCCGCCTCTCCTTCCTCCACGTGTACCACCACGCCACCGTGCTCGTCATGTGCTACCTCTGGCTCCACACTCGCCAGTCCCTGTTCCCGGTGGCGCTCGTGACCAATGCCTCCGTGCACGTGCTCATGTACGCCTACTACATGCTCTGCGCGGTTGGGATCCGCCCCAGGTGGAAGCGGGCCGTCACGAACTGCCAGATAGTCCAGTTCGTGTTCAGCTTTGCGGTGTCGGGTCGGATGCTCTACCTGCATTTCTCCGGGTCCGGCTGCTCCGGAATATGGGGATGGTGCTTCAATGCCGTCTTCAATGCCTCGCTTTTGGCTCTCTTCCTTGACTTTCATGGCAAGAGCTATGCGGGTCCAAAGGATAAACGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

243

Amino Acids

27.45

Weight (kDa)

9.24

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	48 - 242	1.6e-54	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06460 AT3G06470
fragaria_vesca	FvH4_5g29630
malus_domestica	MD08G1227900.v1.1 MD15G1421700.v1.1 MD15G1421900.v1.1
prunus_persica	Prupe.1G567000_v2.0.a1 Prupe.1G567100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222681 RchiOBHm_Chr7g0222701
rosa_laevigata	RLG00000002032
rosa_roxburghii	Rroxscaffold_3G00236540 Rroxscaffold_3G00236550
rosa_rugosa	Rorug07G0212000 Rorug07G0212000
rosa_samantha	Rh7BG344500
rosa_wichuraiana	Rw7G030200 Rw7G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	606
AccII	CGCG	1 cut(s)	503
AccIII	TCCGGA	1 cut(s)	623
AciI	CCGC	7 cut(s)	352, 355, 503, 514, 529, 575, 707
AclWI	GGATC	3 cut(s)	298, 505, 518
AcoI	YGGCCR	1 cut(s)	186
AcvI	CACGTG	2 cut(s)	373, 472
AfaI	GTAC	2 cut(s)	377, 482
AfiI	CCNNNNNNNGG	3 cut(s)	184, 439, 630
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	646, 658
AhdI	GACNNNNNGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	518
AluBI	AGCT	2 cut(s)	570, 702
AluI	AGCT	2 cut(s)	570, 702
Alw21I	GWGCWC	4 cut(s)	36, 396, 471, 477
Alw44I	GTGCAC	1 cut(s)	467
AlwI	GGATC	3 cut(s)	298, 505, 518
AlwNI	CAGNNNCTG	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	623
AoxI	GGCC	4 cut(s)	186, 263, 279, 531
ApaI	GGGCCC	1 cut(s)	267
ApaLI	GTGCAC	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	618
AspLEI	GCGC	2 cut(s)	448, 503
AspS9I	GGNCC	6 cut(s)	263, 264, 279, 531, 612, 710
AsuC2I	CCSGG	3 cut(s)	262, 440, 610
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	2 cut(s)	612, 710
BaeGI	GKGCMC	2 cut(s)	267, 471
BamHI	GGATCC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	449
BbrPI	CACGTG	2 cut(s)	373, 472
BbsI	GAAGAC	2 cut(s)	280, 646
Bbv12I	GWGCWC	4 cut(s)	36, 396, 471, 477
BbvI	GCAGC	1 cut(s)	605
BccI	CCATC	2 cut(s)	215, 630
BceAI	ACGGC	3 cut(s)	173, 518, 635
BciT130I	CCWGG	1 cut(s)	520
BcnI	CCSGG	3 cut(s)	262, 440, 610
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	606
BisI	GCNGC	2 cut(s)	355, 619
BlsI	GCNGC	2 cut(s)	356, 620
Bme1390I	CCNGG	4 cut(s)	262, 440, 520, 610
Bme18I	GGWCC	2 cut(s)	612, 710
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmgT120I	GGNCC	6 cut(s)	263, 264, 279, 531, 612, 710
BmiI	GGNNCC	7 cut(s)	265, 266, 346, 416, 512, 613, 711
BmrFI	CCNGG	4 cut(s)	262, 440, 520, 610
BmsI	GCATC	2 cut(s)	51, 579
BpiI	GAAGAC	2 cut(s)	280, 646
BpuMI	CCSGG	3 cut(s)	262, 440, 610
BsaAI	YACGTR	2 cut(s)	373, 472
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	623
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 439, 630
Bse1I	ACTGG	3 cut(s)	26, 427, 556
BseAI	TCCGGA	1 cut(s)	623
BseBI	CCWGG	1 cut(s)	520
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	6 cut(s)	42, 99, 207, 333, 594, 641
BseLI	CCNNNNNNNGG	3 cut(s)	184, 439, 630
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	3 cut(s)	26, 427, 556
BseRI	GAGGAG	8 cut(s)	101, 125, 128, 155, 158, 161, 205, 305
BseSI	GKGCMC	2 cut(s)	267, 471
BseXI	GCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	503
BshFI	GGCC	4 cut(s)	188, 265, 281, 533
BsiHKAI	GWGCWC	4 cut(s)	36, 396, 471, 477
BsiSI	CCGG	5 cut(s)	261, 440, 609, 615, 624
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	3 cut(s)	184, 439, 630
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	4 cut(s)	188, 265, 281, 533
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	5 cut(s)	36, 267, 396, 471, 477
Bsp13I	TCCGGA	1 cut(s)	623
Bsp143I	GATC	2 cut(s)	303, 510
BspACI	CCGC	7 cut(s)	352, 355, 503, 514, 529, 575, 707
BspANI	GGCC	4 cut(s)	188, 265, 281, 533
BspCNI	CTCAG	1 cut(s)	351
BspEI	TCCGGA	1 cut(s)	623
BspFNI	CGCG	1 cut(s)	503
BspHI	TCATGA	1 cut(s)	728
BspLI	GGNNCC	7 cut(s)	265, 266, 346, 416, 512, 613, 711
BspMI	ACCTGC	1 cut(s)	606
BspPI	GGATC	3 cut(s)	298, 505, 518
BsrI	ACTGG	3 cut(s)	26, 427, 556
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	2 cut(s)	303, 510
BssSI	CACGAG	1 cut(s)	449
Bst2BI	CACGAG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	520
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	4 cut(s)	98, 275, 332, 683
BstBAI	YACGTR	2 cut(s)	373, 472
BstC8I	GCNNGC	2 cut(s)	196, 531
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	6 cut(s)	42, 99, 207, 333, 594, 641
BstFNI	CGCG	1 cut(s)	503
BstH2I	RGCGCY	1 cut(s)	449
BstHHI	GCGC	2 cut(s)	448, 503
BstKTI	GATC	2 cut(s)	306, 513
BstMBI	GATC	2 cut(s)	303, 510
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 351, 598
BstNI	CCWGG	1 cut(s)	520
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	4 cut(s)	260, 438, 518, 608
BstSLI	GKGCMC	2 cut(s)	267, 471
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	605
BstV2I	GAAGAC	2 cut(s)	280, 646
BstX2I	RGATCY	2 cut(s)	303, 510
BstYI	RGATCY	2 cut(s)	303, 510
BsuRI	GGCC	4 cut(s)	188, 265, 281, 533
BtsCI	GGATG	6 cut(s)	42, 99, 207, 333, 594, 641
BtsIMutI	CAGTG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	606
Cac8I	GCNNGC	2 cut(s)	196, 531
CaiI	CAGNNNCTG	1 cut(s)	433
CciI	TCATGA	1 cut(s)	728
CfoI	GCGC	2 cut(s)	448, 503
Cfr13I	GGNCC	6 cut(s)	263, 264, 279, 531, 612, 710
Csp6I	GTAC	2 cut(s)	376, 481
CviAII	CATG	7 cut(s)	57, 184, 400, 478, 493, 692, 729
CviQI	GTAC	2 cut(s)	376, 481
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	2 cut(s)	305, 512
DpnII	GATC	2 cut(s)	303, 510
DriI	GACNNNNNGTC	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	4 cut(s)	98, 275, 332, 683
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	4 cut(s)	98, 275, 332, 683
EciI	GGCGGA	2 cut(s)	341, 503
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	612, 710
Eco72I	CACGTG	2 cut(s)	373, 472
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	7 cut(s)	60, 187, 403, 481, 496, 695, 732
FaiI	YATR	9 cut(s)	58, 185, 401, 479, 494, 631, 693, 705, 730
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	7 cut(s)	56, 183, 399, 477, 492, 691, 728
FauI	CCCGC	2 cut(s)	522, 700
Fnu4HI	GCNGC	2 cut(s)	355, 619
FokI	GGATG	6 cut(s)	29, 86, 194, 320, 601, 648
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	2 cut(s)	355, 619
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	2 cut(s)	447, 502
GluI	GCNGC	2 cut(s)	355, 619
HaeII	RGCGCY	1 cut(s)	449
HaeIII	GGCC	4 cut(s)	188, 265, 281, 533
HapII	CCGG	5 cut(s)	261, 440, 609, 615, 624
HhaI	GCGC	2 cut(s)	448, 503
Hin1II	CATG	7 cut(s)	60, 187, 403, 481, 496, 695, 732
Hin6I	GCGC	2 cut(s)	446, 501
HinP1I	GCGC	2 cut(s)	446, 501
HpaII	CCGG	5 cut(s)	261, 440, 609, 615, 624
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	376, 469
Hpy188I	TCNGA	1 cut(s)	588
Hpy188III	TCNNGA	4 cut(s)	451, 538, 624, 729
Hpy8I	GTNNAC	2 cut(s)	376, 469
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	231, 373
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	3 cut(s)	285, 372, 471
HpyCH4V	TGCA	3 cut(s)	198, 469, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 351, 598
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	3 cut(s)	285, 372, 471
Hsp92II	CATG	7 cut(s)	60, 187, 403, 481, 496, 695, 732
HspAI	GCGC	2 cut(s)	446, 501
Kpn2I	TCCGGA	1 cut(s)	623
Kzo9I	GATC	2 cut(s)	303, 510
LmnI	GCTCC	4 cut(s)	138, 350, 420, 626
Lsp1109I	GCAGC	1 cut(s)	605
LweI	GCATC	2 cut(s)	51, 579
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	3 cut(s)	285, 372, 471
MaeIII	GTNAC	2 cut(s)	451, 535
MalI	GATC	2 cut(s)	305, 512
MboI	GATC	2 cut(s)	303, 510
MboII	GAAGA	7 cut(s)	85, 262, 265, 280, 319, 646, 670
MflI	RGATCY	2 cut(s)	303, 510
MhlI	GDGCHC	5 cut(s)	36, 267, 396, 471, 477
MmeI	TCCRAC	1 cut(s)	566
MroI	TCCGGA	1 cut(s)	623
MspI	CCGG	5 cut(s)	261, 440, 609, 615, 624
MspR9I	CCNGG	4 cut(s)	262, 440, 520, 610
MvaI	CCWGG	1 cut(s)	520
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	31, 351, 598
NciI	CCSGG	3 cut(s)	262, 440, 610
NdeII	GATC	2 cut(s)	303, 510
NlaIII	CATG	7 cut(s)	60, 187, 403, 481, 496, 695, 732
NlaIV	GGNNCC	7 cut(s)	265, 266, 346, 416, 512, 613, 711
NmuCI	GTSAC	2 cut(s)	451, 535
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	356, 620
PmaCI	CACGTG	2 cut(s)	373, 472
PmlI	CACGTG	2 cut(s)	373, 472
Ppu21I	YACGTR	2 cut(s)	373, 472
Psp6I	CCWGG	1 cut(s)	518
PspCI	CACGTG	2 cut(s)	373, 472
PspGI	CCWGG	1 cut(s)	518
PspN4I	GGNNCC	7 cut(s)	265, 266, 346, 416, 512, 613, 711
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	6 cut(s)	263, 264, 279, 531, 612, 710
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	303, 510
RsaI	GTAC	2 cut(s)	377, 482
RsaNI	GTAC	2 cut(s)	376, 481
SatI	GCNGC	2 cut(s)	355, 619
Sau3AI	GATC	2 cut(s)	303, 510
Sau96I	GGNCC	6 cut(s)	263, 264, 279, 531, 612, 710
ScrFI	CCNGG	4 cut(s)	262, 440, 520, 610
SduI	GDGCHC	5 cut(s)	36, 267, 396, 471, 477
SfaNI	GCATC	2 cut(s)	51, 579
SinI	GGWCC	2 cut(s)	612, 710
SsiI	CCGC	7 cut(s)	352, 355, 503, 514, 529, 575, 707
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	4 cut(s)	260, 438, 518, 608
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	3 cut(s)	288, 375, 474
TaqI	TCGA	2 cut(s)	309, 318
TauI	GCSGC	1 cut(s)	357
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	2 cut(s)	451, 535
TseI	GCWGC	1 cut(s)	618
Tsp45I	GTSAC	2 cut(s)	451, 535
TspDTI	ATGAA	3 cut(s)	17, 319, 680
TspGWI	ACGGA	2 cut(s)	77, 454
TspRI	CASTG	1 cut(s)	346
VneI	GTGCAC	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	612, 710
XceI	RCATGY	1 cut(s)	496
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.