Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013056

Physical Location & Seq

Genomic Coordinates Reverse (-)

52380116 .. 52380937

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1421900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGCCACGTCGTGTCAAACCTCCGGTACTGGCTGGTCAACCACCCTACGATTCTCCACTTCTCGTGGATTCCAGGTCAAACTCCAGCCTCCACCCCACTCTTCCTCACTCTCTCTCTCATCTTCTACCTCTCTCTCACCTTCCTCCTCCGCCGCCTCCCACTCTCCCCCATCAACCCCGTACTACTCAAACCAATCACAGCCGTCCACAACCTCATCCTCTTCCTCATCTCCCTCATCATGGCCGTCGGATGCACCCTCACCATTCTCTCCCCCAACACTCCAAACCTCGATTGGATCCTCTGCTTCCCACCCAACACCTCCCCGACCGGGCCCCACTTTTTCTGGGCCTACGTCTACTACCTCTCAAAAATCCTCGAATTCTTCGACACCCTCTTCATCATCCTCAGCGGGTCCATTCAACGGCTCTCCTTTCTCCACGTATACCACCACGCGACAGTGCTGGTCATGTGCTACTTATGGCTGCACACGTGCCAGTCCCTATCCCCAGTGGCGCTCGTGACCAACGCGTCAGTGCACGTGCTCATGTACGGGTACTACTTCTTGTGCGCGGTCGGGATCCGGCCCAAGTGGAAGCGGGTCGTCACGGATTGCCAGATCGTGCAGTTTTTGTTCAGCTTCGTGGTGTCGGGTCGGATGCTGTACTTGCACTTCACCGGGTCGGGTTGCTCCGGGATTTGGGGCTGGTGCTTCAACGCTGCGTTTAACGCCTCTCTCTTGGCCCTGTTTATTGACTTTCACGCCAGGAGTTATGCCAAGAGACAGAATATGGTATCGCGTCAAAAGAATAAAAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

274

Amino Acids

31.16

Weight (kDa)

9.53

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	29 - 263	1.2e-60	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06460 AT3G06470
fragaria_vesca	FvH4_5g29630
malus_domestica	MD08G1227900.v1.1 MD15G1421700.v1.1 MD15G1421900.v1.1
prunus_persica	Prupe.1G567000_v2.0.a1 Prupe.1G567100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222681 RchiOBHm_Chr7g0222701
rosa_laevigata	RLG00000002032
rosa_roxburghii	Rroxscaffold_3G00236540 Rroxscaffold_3G00236550
rosa_rugosa	Rorug07G0212000 Rorug07G0212000
rosa_samantha	Rh7BG344500
rosa_wichuraiana	Rw7G030200 Rw7G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	529
AccI	GTMKAC	2 cut(s)	357, 444
AccII	CGCG	4 cut(s)	455, 530, 572, 799
AciI	CCGC	5 cut(s)	151, 154, 411, 572, 598
AclWI	GGATC	4 cut(s)	292, 305, 574, 587
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	380
AcvI	CACGTG	2 cut(s)	492, 541
AdeI	CACNNNGTG	1 cut(s)	13
AfaI	GTAC	5 cut(s)	29, 183, 551, 557, 665
AfiI	CCNNNNNNNGG	4 cut(s)	241, 330, 423, 699
AflIII	ACRYGT	2 cut(s)	489, 528
AgsI	TTSAA	2 cut(s)	422, 715
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	73, 764
AluBI	AGCT	2 cut(s)	639, 816
AluI	AGCT	2 cut(s)	639, 816
Alw21I	GWGCWC	2 cut(s)	540, 546
Alw26I	GTCTC	1 cut(s)	775
Alw44I	GTGCAC	1 cut(s)	536
AlwI	GGATC	4 cut(s)	292, 305, 574, 587
AoxI	GGCC	5 cut(s)	243, 332, 348, 584, 741
ApaI	GGGCCC	1 cut(s)	336
ApaLI	GTGCAC	1 cut(s)	536
ApeKI	GCWGC	2 cut(s)	484, 719
ApoI	RAATTY	1 cut(s)	380
AspLEI	GCGC	2 cut(s)	517, 572
AspS9I	GGNCC	6 cut(s)	332, 333, 348, 414, 585, 742
AsuC2I	CCSGG	3 cut(s)	331, 679, 694
AsuHPI	GGTGA	3 cut(s)	130, 253, 667
AvaII	GGWCC	1 cut(s)	414
BaeGI	GKGCMC	2 cut(s)	336, 540
BamHI	GGATCC	2 cut(s)	297, 579
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BauI	CACGAG	2 cut(s)	64, 518
BbrPI	CACGTG	2 cut(s)	492, 541
Bbv12I	GWGCWC	2 cut(s)	540, 546
BbvCI	CCTCAGC	1 cut(s)	407
BbvI	GCAGC	2 cut(s)	471, 706
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	3 cut(s)	188, 230, 440
BciT130I	CCWGG	2 cut(s)	75, 766
BcnI	CCSGG	3 cut(s)	331, 679, 694
BcoDI	GTCTC	1 cut(s)	775
BfoI	RGCGCY	1 cut(s)	518
BisI	GCNGC	3 cut(s)	154, 485, 720
BlsI	GCNGC	3 cut(s)	155, 486, 721
Bme1390I	CCNGG	5 cut(s)	75, 331, 679, 694, 766
Bme18I	GGWCC	1 cut(s)	414
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	6 cut(s)	332, 333, 348, 414, 585, 742
BmiI	GGNNCC	5 cut(s)	299, 334, 335, 415, 581
BmrFI	CCNGG	5 cut(s)	75, 331, 679, 694, 766
BmrI	ACTGGG	1 cut(s)	503
BmsI	GCATC	2 cut(s)	242, 648
BmuI	ACTGGG	1 cut(s)	503
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	407
BpuMI	CCSGG	3 cut(s)	331, 679, 694
BsaAI	YACGTR	3 cut(s)	442, 492, 541
BsaWI	WCCGGW	1 cut(s)	24
Bsc4I	CCNNNNNNNGG	4 cut(s)	241, 330, 423, 699
Bse1I	ACTGG	3 cut(s)	35, 496, 509
BseBI	CCWGG	2 cut(s)	75, 766
BseGI	GGATG	4 cut(s)	216, 257, 402, 663
BseLI	CCNNNNNNNGG	4 cut(s)	241, 330, 423, 699
BseMII	CTCAG	1 cut(s)	421
BseNI	ACTGG	3 cut(s)	35, 496, 509
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	2 cut(s)	336, 540
BseXI	GCAGC	2 cut(s)	471, 706
BsgI	GTGCAG	2 cut(s)	470, 644
Bsh1236I	CGCG	4 cut(s)	455, 530, 572, 799
Bsh1285I	CGRYCG	2 cut(s)	330, 576
BshFI	GGCC	5 cut(s)	245, 334, 350, 586, 743
BsiEI	CGRYCG	2 cut(s)	330, 576
BsiHKAI	GWGCWC	2 cut(s)	540, 546
BsiSI	CCGG	5 cut(s)	25, 330, 583, 678, 693
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	4 cut(s)	241, 330, 423, 699
BsmAI	GTCTC	1 cut(s)	775
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	5 cut(s)	245, 334, 350, 586, 743
Bsp120I	GGGCCC	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	336, 540, 546
Bsp143I	GATC	3 cut(s)	297, 579, 618
BspACI	CCGC	5 cut(s)	151, 154, 411, 572, 598
BspANI	GGCC	5 cut(s)	245, 334, 350, 586, 743
BspCNI	CTCAG	1 cut(s)	420
BspFNI	CGCG	4 cut(s)	455, 530, 572, 799
BspHI	TCATGA	1 cut(s)	818
BspLI	GGNNCC	5 cut(s)	299, 334, 335, 415, 581
BspPI	GGATC	4 cut(s)	292, 305, 574, 587
BsrI	ACTGG	3 cut(s)	35, 496, 509
BssMI	GATC	3 cut(s)	297, 579, 618
BssNAI	GTATAC	1 cut(s)	445
BssSI	CACGAG	2 cut(s)	64, 518
Bst1107I	GTATAC	1 cut(s)	445
Bst2BI	CACGAG	2 cut(s)	64, 518
Bst2UI	CCWGG	2 cut(s)	75, 766
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	3 cut(s)	107, 227, 401
BstBAI	YACGTR	3 cut(s)	442, 492, 541
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	4 cut(s)	216, 257, 402, 663
BstFNI	CGCG	4 cut(s)	455, 530, 572, 799
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	517, 572
BstKTI	GATC	3 cut(s)	300, 582, 621
BstMAI	GTCTC	1 cut(s)	775
BstMBI	GATC	3 cut(s)	297, 579, 618
BstMCI	CGRYCG	2 cut(s)	330, 576
BstMWI	GCNNNNNNNGC	2 cut(s)	667, 728
BstNI	CCWGG	2 cut(s)	75, 766
BstSCI	CCNGG	5 cut(s)	73, 329, 677, 692, 764
BstSLI	GKGCMC	2 cut(s)	336, 540
BstUI	CGCG	4 cut(s)	455, 530, 572, 799
BstV1I	GCAGC	2 cut(s)	471, 706
BstX2I	RGATCY	2 cut(s)	297, 579
BstYI	RGATCY	2 cut(s)	297, 579
BstZ17I	GTATAC	1 cut(s)	445
BsuRI	GGCC	5 cut(s)	245, 334, 350, 586, 743
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	4 cut(s)	216, 257, 402, 663
BtsIMutI	CAGTG	3 cut(s)	465, 516, 540
CciI	TCATGA	1 cut(s)	818
CfoI	GCGC	2 cut(s)	517, 572
Cfr13I	GGNCC	6 cut(s)	332, 333, 348, 414, 585, 742
CseI	GACGC	2 cut(s)	519, 788
Csp6I	GTAC	5 cut(s)	28, 182, 550, 556, 664
CviAII	CATG	4 cut(s)	241, 469, 547, 819
CviQI	GTAC	5 cut(s)	28, 182, 550, 556, 664
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	3 cut(s)	299, 581, 620
DpnII	GATC	3 cut(s)	297, 579, 618
DraIII	CACNNNGTG	1 cut(s)	13
DrdI	GACNNNNNNGTC	1 cut(s)	529
DseDI	GACNNNNNNGTC	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	3 cut(s)	107, 227, 401
EarI	CTCTTC	3 cut(s)	107, 227, 401
EciI	GGCGGA	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	414
Eco72I	CACGTG	2 cut(s)	492, 541
EcoO109I	RGGNCCY	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	73, 764
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	4 cut(s)	244, 472, 550, 822
FaiI	YATR	8 cut(s)	242, 445, 470, 481, 548, 774, 791, 820
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	4 cut(s)	240, 468, 546, 818
FauI	CCCGC	2 cut(s)	404, 591
FblI	GTMKAC	2 cut(s)	357, 444
Fnu4HI	GCNGC	3 cut(s)	154, 485, 720
FokI	GGATG	4 cut(s)	203, 264, 389, 670
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	3 cut(s)	154, 485, 720
GlaI	GCGC	2 cut(s)	516, 571
GluI	GCNGC	3 cut(s)	154, 485, 720
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	5 cut(s)	245, 334, 350, 586, 743
HapII	CCGG	5 cut(s)	25, 330, 583, 678, 693
HgaI	GACGC	2 cut(s)	519, 788
HhaI	GCGC	2 cut(s)	517, 572
Hin1II	CATG	4 cut(s)	244, 472, 550, 822
Hin6I	GCGC	2 cut(s)	515, 570
HinP1I	GCGC	2 cut(s)	515, 570
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	2 cut(s)	52, 70
HpaII	CCGG	5 cut(s)	25, 330, 583, 678, 693
HphI	GGTGA	3 cut(s)	130, 253, 667
Hpy166II	GTNNAC	5 cut(s)	40, 208, 358, 445, 538
Hpy188I	TCNGA	2 cut(s)	251, 657
Hpy188III	TCNNGA	3 cut(s)	520, 577, 819
Hpy8I	GTNNAC	5 cut(s)	40, 208, 358, 445, 538
Hpy99I	CGWCG	2 cut(s)	14, 251
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	5 cut(s)	9, 354, 441, 491, 540
HpyCH4V	TGCA	5 cut(s)	255, 487, 538, 625, 670
HpyF10VI	GCNNNNNNNGC	2 cut(s)	667, 728
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	5 cut(s)	9, 354, 441, 491, 540
Hsp92II	CATG	4 cut(s)	244, 472, 550, 822
HspAI	GCGC	2 cut(s)	515, 570
Kzo9I	GATC	3 cut(s)	297, 579, 618
LmnI	GCTCC	1 cut(s)	695
Lsp1109I	GCAGC	2 cut(s)	471, 706
LweI	GCATC	2 cut(s)	242, 648
MaeII	ACGT	5 cut(s)	9, 354, 441, 491, 540
MaeIII	GTNAC	2 cut(s)	520, 604
MalI	GATC	3 cut(s)	299, 581, 620
MboI	GATC	3 cut(s)	297, 579, 618
MboII	GAAGA	5 cut(s)	94, 115, 214, 376, 388
MflI	RGATCY	2 cut(s)	297, 579
MhlI	GDGCHC	3 cut(s)	336, 540, 546
MluCI	AATT	1 cut(s)	380
MluI	ACGCGT	1 cut(s)	528
MmeI	TCCRAC	2 cut(s)	229, 635
MseI	TTAA	1 cut(s)	726
MspA1I	CMGCKG	1 cut(s)	411
MspI	CCGG	5 cut(s)	25, 330, 583, 678, 693
MspR9I	CCNGG	5 cut(s)	75, 331, 679, 694, 766
MvaI	CCWGG	2 cut(s)	75, 766
MvnI	CGCG	4 cut(s)	455, 530, 572, 799
MwoI	GCNNNNNNNGC	2 cut(s)	667, 728
NciI	CCSGG	3 cut(s)	331, 679, 694
NdeII	GATC	3 cut(s)	297, 579, 618
NlaIII	CATG	4 cut(s)	244, 472, 550, 822
NlaIV	GGNNCC	5 cut(s)	299, 334, 335, 415, 581
NmuCI	GTSAC	2 cut(s)	520, 604
PagI	TCATGA	1 cut(s)	818
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	52, 70
PfoI	TCCNGGA	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	155, 486, 721
PmaCI	CACGTG	2 cut(s)	492, 541
PmlI	CACGTG	2 cut(s)	492, 541
Ppu21I	YACGTR	3 cut(s)	442, 492, 541
Psp6I	CCWGG	2 cut(s)	73, 764
PspCI	CACGTG	2 cut(s)	492, 541
PspGI	CCWGG	2 cut(s)	73, 764
PspN4I	GGNNCC	5 cut(s)	299, 334, 335, 415, 581
PspOMI	GGGCCC	1 cut(s)	332
PspPI	GGNCC	6 cut(s)	332, 333, 348, 414, 585, 742
PsuI	RGATCY	2 cut(s)	297, 579
RsaI	GTAC	5 cut(s)	29, 183, 551, 557, 665
RsaNI	GTAC	5 cut(s)	28, 182, 550, 556, 664
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	3 cut(s)	154, 485, 720
Sau3AI	GATC	3 cut(s)	297, 579, 618
Sau96I	GGNCC	6 cut(s)	332, 333, 348, 414, 585, 742
ScrFI	CCNGG	5 cut(s)	75, 331, 679, 694, 766
SduI	GDGCHC	3 cut(s)	336, 540, 546
SfaNI	GCATC	2 cut(s)	242, 648
SinI	GGWCC	1 cut(s)	414
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	5 cut(s)	151, 154, 411, 572, 598
StyD4I	CCNGG	5 cut(s)	73, 329, 677, 692, 764
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	5 cut(s)	12, 357, 444, 494, 543
TaqI	TCGA	3 cut(s)	291, 378, 387
TasI	AATT	1 cut(s)	380
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	52, 70
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	3 cut(s)	465, 516, 540
TseFI	GTSAC	2 cut(s)	520, 604
TseI	GCWGC	2 cut(s)	484, 719
Tsp45I	GTSAC	2 cut(s)	520, 604
TspDTI	ATGAA	1 cut(s)	388
TspGWI	ACGGA	1 cut(s)	623
TspRI	CASTG	3 cut(s)	465, 516, 540
VneI	GTGCAC	1 cut(s)	536
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	1 cut(s)	291
XmiI	GTMKAC	2 cut(s)	357, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.