Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013056

Physical Location & Seq

Genomic Coordinates Reverse (-)

23903373 .. 23906717

Gene Structure 3345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGTCAAAGCTCCAATACTGGCTAGTAGAGCACCCAAGCATCCTCCACTTCTCATGGACGGAGGGTCAAACCCGTGCCTCCACCCCACTCTTCCTCATCCTCGCCCTCCTCTCCTATCTCTCCCTCACTCTCCTCCTCACGCGCCTCCCTCTCTCCCCCCTCAACCCCGCCCTCCTCAAACCAATCTCAGCCCTCCACAACCTCACCCTCCTCCTCCTCTCCCTCATCATGGCCGTCGCTTGCACCCTCTCCATCCTCTCCTCCCCTTCCTCCACCCTCTGCTTCTCCCCCAACACCAACCCAACCGGGCCCCTCTTCTTCTGGGCCTACGTCTTCTACCTCTCCAAGCTCCTCGAACTCCTCGACACCCTCTTTATCATCCTCAGTGGCTCCCTCCGCCGCCTCTCCTTCCTCCACGTGTACCACCACGCCACCGTCCTCGTCATGTGCTACCTCTGGCTCCACACTCGCCAGTCCCTGTTCCCGGTGGCGCTCGTGACCAATGCCTCCGTGCACGTGCTCATGTACGCCTACTACATGCTCTGCGCGGTTGGAATCCGCCCCAGGTGGAAGCGGGCCGTCACGGACTGCCAGATAGTCCAGTTCGTGTTCAGCTTTGCGGTGTCGGGTCGGATGCTCTACCTGCATTTCTCCGGGTCCGGCTGCTCCGGAATATGGGGATGGTGCTTCAATGCCGTCTTCAATGCCTCGCTTTTGGCTCTCTTCCTTGACTTTCATGGGAAGAGCTATGCGGGTTTATTTGGGAGCAATAAACCTTTCCGGTGTCCTATGAGATCTTCGACAACCTCTTTGAGGACCTCGGGCGAGGTTTTCAAAGAAATCCGGTGGGCGGTGGTTGGTGACCGGAATCCTGCGATCGTTGACCGGAATTTGACGGCCGGTGACAGGAATCCTGCTGCCGATGCGGGACTCCAGCGAAGTCTCCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009922 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019367 GO:0019368 GO:0019752 GO:0030148 GO:0030176 GO:0030497 GO:0031224 GO:0031227 GO:0031984 GO:0032787 GO:0034625 GO:0034626 GO:0042175 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046467 GO:0071704 GO:0072330 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELO

Protein Analysis

317

Amino Acids

35.47

Weight (kDa)

9.61

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELO	PF01151	27 - 252	4.1e-57	GNS1/SUR4 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06460 AT3G06470
fragaria_vesca	FvH4_5g29630
malus_domestica	MD08G1227900.v1.1 MD15G1421700.v1.1 MD15G1421900.v1.1
prunus_persica	Prupe.1G567000_v2.0.a1 Prupe.1G567100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0222681 RchiOBHm_Chr7g0222701
rosa_laevigata	RLG00000002032
rosa_roxburghii	Rroxscaffold_3G00236540 Rroxscaffold_3G00236550
rosa_rugosa	Rorug07G0212000 Rorug07G0212000
rosa_samantha	Rh7BG344500
rosa_wichuraiana	Rw7G030200 Rw7G030210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	654
AccII	CGCG	2 cut(s)	145, 551
AccIII	TCCGGA	1 cut(s)	671
AcoI	YGGCCR	2 cut(s)	234, 900
AcsI	RAATTY	1 cut(s)	892
AcvI	CACGTG	2 cut(s)	421, 520
AfaI	GTAC	2 cut(s)	425, 530
AfiI	CCNNNNNNNGG	6 cut(s)	232, 487, 678, 816, 853, 909
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	3 cut(s)	694, 706, 838
AhdI	GACNNNNNGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	4 cut(s)	13, 352, 618, 750
AluI	AGCT	4 cut(s)	13, 352, 618, 750
Alw21I	GWGCWC	3 cut(s)	36, 519, 525
Alw26I	GTCTC	1 cut(s)	950
Alw44I	GTGCAC	1 cut(s)	515
AlwNI	CAGNNNCTG	1 cut(s)	481
Ama87I	CYCGRG	1 cut(s)	823
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	5 cut(s)	234, 311, 327, 579, 900
ApaI	GGGCCC	1 cut(s)	315
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	2 cut(s)	666, 920
ApoI	RAATTY	1 cut(s)	892
ArsI	GACNNNNNNTTYG	2 cut(s)	796, 828
AspLEI	GCGC	3 cut(s)	147, 496, 551
AspS9I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 819
AsuC2I	CCSGG	3 cut(s)	310, 488, 658
AsuHPI	GGTGA	3 cut(s)	199, 875, 917
AvaI	CYCGRG	1 cut(s)	823
AvaII	GGWCC	2 cut(s)	660, 819
BaeGI	GKGCMC	2 cut(s)	315, 519
BanII	GRGCYC	1 cut(s)	315
BauI	CACGAG	1 cut(s)	497
BbrPI	CACGTG	2 cut(s)	421, 520
BbsI	GAAGAC	2 cut(s)	328, 694
Bbv12I	GWGCWC	3 cut(s)	36, 519, 525
BbvI	GCAGC	2 cut(s)	653, 907
BccI	CCATC	2 cut(s)	263, 678
BceAI	ACGGC	4 cut(s)	221, 566, 683, 915
BciT130I	CCWGG	1 cut(s)	568
BcnI	CCSGG	3 cut(s)	310, 488, 658
BcoDI	GTCTC	1 cut(s)	950
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	654
BglII	AGATCT	1 cut(s)	797
BisI	GCNGC	3 cut(s)	403, 667, 921
BlsI	GCNGC	3 cut(s)	404, 668, 922
Bme1390I	CCNGG	4 cut(s)	310, 488, 568, 658
Bme18I	GGWCC	2 cut(s)	660, 819
BmeRI	GACNNNNNGTC	1 cut(s)	66
BmeT110I	CYCGRG	1 cut(s)	823
BmgT120I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 819
BmiI	GGNNCC	5 cut(s)	313, 314, 394, 464, 661
BmrFI	CCNGG	4 cut(s)	310, 488, 568, 658
BmsI	GCATC	3 cut(s)	51, 627, 916
BpiI	GAAGAC	2 cut(s)	328, 694
BpmI	CTGGAG	1 cut(s)	920
BpuMI	CCSGG	3 cut(s)	310, 488, 658
BsaAI	YACGTR	2 cut(s)	421, 520
BsaJI	CCNNGG	2 cut(s)	566, 822
BsaWI	WCCGGW	5 cut(s)	671, 783, 846, 867, 888
Bsc4I	CCNNNNNNNGG	6 cut(s)	232, 487, 678, 816, 853, 909
Bse118I	RCCGGY	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	26, 475, 604
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	2 cut(s)	566, 822
BseGI	GGATG	6 cut(s)	42, 99, 255, 381, 642, 689
BseLI	CCNNNNNNNGG	6 cut(s)	232, 487, 678, 816, 853, 909
BseMII	CTCAG	2 cut(s)	204, 400
BseNI	ACTGG	3 cut(s)	26, 475, 604
BseSI	GKGCMC	2 cut(s)	315, 519
BseX3I	CGGCCG	1 cut(s)	900
BseXI	GCAGC	2 cut(s)	653, 907
Bsh1236I	CGCG	2 cut(s)	145, 551
Bsh1285I	CGRYCG	2 cut(s)	882, 903
BshFI	GGCC	5 cut(s)	236, 313, 329, 581, 902
BsiEI	CGRYCG	2 cut(s)	882, 903
BsiHKAI	GWGCWC	3 cut(s)	36, 519, 525
BsiHKCI	CYCGRG	1 cut(s)	823
BslFI	GGGAC	2 cut(s)	463, 945
BslI	CCNNNNNNNGG	6 cut(s)	232, 487, 678, 816, 853, 909
BsmAI	GTCTC	1 cut(s)	950
BsmFI	GGGAC	2 cut(s)	463, 945
BsnI	GGCC	5 cut(s)	236, 313, 329, 581, 902
BsoBI	CYCGRG	1 cut(s)	823
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	4 cut(s)	36, 315, 519, 525
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	2 cut(s)	797, 879
BspANI	GGCC	5 cut(s)	236, 313, 329, 581, 902
BspCNI	CTCAG	2 cut(s)	203, 399
BspEI	TCCGGA	1 cut(s)	671
BspFNI	CGCG	2 cut(s)	145, 551
BspLI	GGNNCC	5 cut(s)	313, 314, 394, 464, 661
BspMI	ACCTGC	1 cut(s)	654
BspQI	GCTCTTC	1 cut(s)	740
BsrFI	RCCGGY	1 cut(s)	902
BsrI	ACTGG	3 cut(s)	26, 475, 604
BssAI	RCCGGY	1 cut(s)	902
BssECI	CCNNGG	2 cut(s)	566, 822
BssMI	GATC	2 cut(s)	797, 879
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	4 cut(s)	98, 323, 731, 740
BstBAI	YACGTR	2 cut(s)	421, 520
BstC8I	GCNNGC	2 cut(s)	244, 579
BstDEI	CTNAG	2 cut(s)	190, 386
BstEII	GGTNACC	1 cut(s)	863
BstENI	CCTNNNNNAGG	1 cut(s)	814
BstF5I	GGATG	6 cut(s)	42, 99, 255, 381, 642, 689
BstFNI	CGCG	2 cut(s)	145, 551
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	3 cut(s)	147, 496, 551
BstKTI	GATC	2 cut(s)	800, 882
BstMAI	GTCTC	1 cut(s)	950
BstMBI	GATC	2 cut(s)	797, 879
BstMCI	CGRYCG	2 cut(s)	882, 903
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 399, 646, 926
BstNI	CCWGG	1 cut(s)	568
BstNSI	RCATGY	1 cut(s)	544
BstPI	GGTNACC	1 cut(s)	863
BstSCI	CCNGG	4 cut(s)	308, 486, 566, 656
BstSLI	GKGCMC	2 cut(s)	315, 519
BstUI	CGCG	2 cut(s)	145, 551
BstV1I	GCAGC	2 cut(s)	653, 907
BstV2I	GAAGAC	2 cut(s)	328, 694
BstX2I	RGATCY	1 cut(s)	797
BstYI	RGATCY	1 cut(s)	797
BstZI	CGGCCG	1 cut(s)	900
BsuRI	GGCC	5 cut(s)	236, 313, 329, 581, 902
BtsCI	GGATG	6 cut(s)	42, 99, 255, 381, 642, 689
BtsIMutI	CAGTG	1 cut(s)	394
BveI	ACCTGC	1 cut(s)	654
Cac8I	GCNNGC	2 cut(s)	244, 579
CaiI	CAGNNNCTG	1 cut(s)	481
CfoI	GCGC	3 cut(s)	147, 496, 551
Cfr10I	RCCGGY	1 cut(s)	902
Cfr13I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 819
Csp6I	GTAC	2 cut(s)	424, 529
CviAII	CATG	6 cut(s)	57, 232, 448, 526, 541, 740
CviQI	GTAC	2 cut(s)	424, 529
DdeI	CTNAG	2 cut(s)	190, 386
DpnI	GATC	2 cut(s)	799, 881
DpnII	GATC	2 cut(s)	797, 879
DriI	GACNNNNNGTC	1 cut(s)	66
EaeI	YGGCCR	2 cut(s)	234, 900
EagI	CGGCCG	1 cut(s)	900
Eam1104I	CTCTTC	4 cut(s)	98, 323, 731, 740
Eam1105I	GACNNNNNGTC	1 cut(s)	66
EarI	CTCTTC	4 cut(s)	98, 323, 731, 740
EciI	GGCGGA	2 cut(s)	389, 551
EclXI	CGGCCG	1 cut(s)	900
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	2 cut(s)	660, 819
Eco52I	CGGCCG	1 cut(s)	900
Eco72I	CACGTG	2 cut(s)	421, 520
Eco88I	CYCGRG	1 cut(s)	823
Eco91I	GGTNACC	1 cut(s)	863
EcoNI	CCTNNNNNAGG	1 cut(s)	814
EcoO109I	RGGNCCY	2 cut(s)	312, 819
EcoO65I	GGTNACC	1 cut(s)	863
EcoRII	CCWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	6 cut(s)	60, 235, 451, 529, 544, 743
FaqI	GGGAC	2 cut(s)	463, 945
FatI	CATG	6 cut(s)	56, 231, 447, 525, 540, 739
FauI	CCCGC	4 cut(s)	178, 570, 748, 922
Fnu4HI	GCNGC	3 cut(s)	403, 667, 921
FokI	GGATG	6 cut(s)	29, 86, 242, 368, 649, 696
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	403, 667, 921
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	3 cut(s)	146, 495, 550
GluI	GCNGC	3 cut(s)	403, 667, 921
GsuI	CTGGAG	1 cut(s)	920
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	5 cut(s)	236, 313, 329, 581, 902
HhaI	GCGC	3 cut(s)	147, 496, 551
Hin1II	CATG	6 cut(s)	60, 235, 451, 529, 544, 743
Hin6I	GCGC	3 cut(s)	145, 494, 549
HinP1I	GCGC	3 cut(s)	145, 494, 549
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HinfI	GANTC	4 cut(s)	558, 871, 913, 933
HphI	GGTGA	3 cut(s)	199, 875, 917
Hpy166II	GTNNAC	3 cut(s)	424, 517, 886
Hpy188I	TCNGA	1 cut(s)	636
Hpy188III	TCNNGA	2 cut(s)	499, 672
Hpy8I	GTNNAC	3 cut(s)	424, 517, 886
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	279, 421
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	3 cut(s)	333, 420, 519
HpyCH4V	TGCA	3 cut(s)	246, 517, 649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 399, 646, 926
HpyF3I	CTNAG	2 cut(s)	190, 386
HpySE526I	ACGT	3 cut(s)	333, 420, 519
Hsp92II	CATG	6 cut(s)	60, 235, 451, 529, 544, 743
HspAI	GCGC	3 cut(s)	145, 494, 549
Kpn2I	TCCGGA	1 cut(s)	671
Kzo9I	GATC	2 cut(s)	797, 879
LguI	GCTCTTC	1 cut(s)	740
LmnI	GCTCC	6 cut(s)	18, 357, 398, 468, 674, 768
Lsp1109I	GCAGC	2 cut(s)	653, 907
LweI	GCATC	3 cut(s)	51, 627, 916
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	3 cut(s)	333, 420, 519
MaeIII	GTNAC	4 cut(s)	499, 583, 863, 905
MalI	GATC	2 cut(s)	799, 881
MboI	GATC	2 cut(s)	797, 879
MboII	GAAGA	8 cut(s)	85, 310, 313, 328, 694, 718, 757, 792
MflI	RGATCY	1 cut(s)	797
MhlI	GDGCHC	4 cut(s)	36, 315, 519, 525
MluCI	AATT	1 cut(s)	892
MlyI	GAGTC	1 cut(s)	927
MmeI	TCCRAC	2 cut(s)	535, 614
MroI	TCCGGA	1 cut(s)	671
MspR9I	CCNGG	4 cut(s)	310, 488, 568, 658
MvaI	CCWGG	1 cut(s)	568
MvnI	CGCG	2 cut(s)	145, 551
MwoI	GCNNNNNNNGC	4 cut(s)	31, 399, 646, 926
NciI	CCSGG	3 cut(s)	310, 488, 658
NdeII	GATC	2 cut(s)	797, 879
NlaIII	CATG	6 cut(s)	60, 235, 451, 529, 544, 743
NlaIV	GGNNCC	5 cut(s)	313, 314, 394, 464, 661
NmuCI	GTSAC	4 cut(s)	499, 583, 863, 905
NspI	RCATGY	1 cut(s)	544
PciSI	GCTCTTC	1 cut(s)	740
PcsI	WCGNNNNNNNCGW	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	558, 871, 913
PkrI	GCNGC	3 cut(s)	404, 668, 922
Ple19I	CGATCG	1 cut(s)	882
PleI	GAGTC	1 cut(s)	927
PmaCI	CACGTG	2 cut(s)	421, 520
PmlI	CACGTG	2 cut(s)	421, 520
PpsI	GAGTC	1 cut(s)	927
Ppu21I	YACGTR	2 cut(s)	421, 520
PpuMI	RGGWCCY	1 cut(s)	819
Psp5II	RGGWCCY	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	566
PspCI	CACGTG	2 cut(s)	421, 520
PspEI	GGTNACC	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	5 cut(s)	313, 314, 394, 464, 661
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 819
PspPPI	RGGWCCY	1 cut(s)	819
PstNI	CAGNNNCTG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	797
PvuI	CGATCG	1 cut(s)	882
RsaI	GTAC	2 cut(s)	425, 530
RsaNI	GTAC	2 cut(s)	424, 529
SapI	GCTCTTC	1 cut(s)	740
SatI	GCNGC	3 cut(s)	403, 667, 921
Sau3AI	GATC	2 cut(s)	797, 879
Sau96I	GGNCC	6 cut(s)	311, 312, 327, 579, 660, 819
SchI	GAGTC	1 cut(s)	927
ScrFI	CCNGG	4 cut(s)	310, 488, 568, 658
SduI	GDGCHC	4 cut(s)	36, 315, 519, 525
SfaNI	GCATC	3 cut(s)	51, 627, 916
SinI	GGWCC	2 cut(s)	660, 819
Sse9I	AATT	1 cut(s)	892
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	4 cut(s)	308, 486, 566, 656
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	3 cut(s)	336, 423, 522
TaqI	TCGA	3 cut(s)	357, 366, 803
TasI	AATT	1 cut(s)	892
TauI	GCSGC	1 cut(s)	405
TfiI	GAWTC	3 cut(s)	558, 871, 913
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	4 cut(s)	499, 583, 863, 905
TseI	GCWGC	2 cut(s)	666, 920
Tsp45I	GTSAC	4 cut(s)	499, 583, 863, 905
TspDTI	ATGAA	2 cut(s)	17, 728
TspGWI	ACGGA	3 cut(s)	77, 502, 602
TspRI	CASTG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	660, 819
XagI	CCTNNNNNAGG	1 cut(s)	814
XapI	RAATTY	1 cut(s)	892
XceI	RCATGY	1 cut(s)	544
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.