Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014750

Physical Location & Seq

Genomic Coordinates Reverse (-)

23421180 .. 23422756

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32460.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCGAAACTCACGGCGAAGGAAAGTGGAGCAAAGTTTCAAAGGAAACAGGTAAGAAATTTTTATACCAAGACAATGGATTATAGTTTACATGGAACAAAAATTAGTGAAGATGTTATAACGGATCCAGGTCTCAAGAGATGCGGGAAAAGTTGCAGGGTGCGGTGGCTAAACTATCTAAGATCCAATATCAAGAGGGGCAATATCTCACCGGAGGACGAAGACCTCATCATGAGACTCCACAAGCTCTTAGGCAACAGATGGTCTCTCATTTCAAGGAGACTTCCAGGGAGAACAGATACTGAAATCAAGAATCACTGGAACACTGTCATAAGAAGAAGGAAGATCATCAATAGCAAGAAGCAATGCATATCAGAAAACAATAAACGGAACAACAAACCTTCTGTTGGGAGCTCCCATTTGCTGTTGACAGACTCTGATGCAGTCCATACGAATCCGGCAAGAATAATGAAAGTTGGTAAAGCTGTTCACCAACAGTCACATAATGACGAAAATCTTGAAACTGATGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

179

Amino Acids

20.58

Weight (kDa)

10.12

Isoelectric Point (pI)

63.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	4 - 50	5.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	6 - 64	2.5e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	103 - 130	7.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32460 FvH4_5g32460
malus_domestica	MD02G1087500.v1.1 MD15G1215100.v1.1
prunus_persica	Prupe.4G204800_v2.0.a1 Prupe.4G204800_v2.0.a1
pyrus_communis	pycom02g07030 pycom15g19080
rosa_chinensis	RchiOBHm_Chr7g0229011
rosa_laevigata	RLG00000001535
rosa_roxburghii	Rroxscaffold_3G00230790 Rroxscaffold_3G00238190
rosa_rugosa	Rorug07G0254800
rosa_samantha	Rh7AG406200 Rh7CG423800 Rh7DG400600
rosa_wichuraiana	Rw7G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AciI	CCGC	2 cut(s)	144, 163
AclWI	GGATC	3 cut(s)	119, 132, 177
AcsI	RAATTY	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	41, 276, 521
AjnI	CCWGG	2 cut(s)	127, 286
AluBI	AGCT	3 cut(s)	247, 414, 485
AluI	AGCT	3 cut(s)	247, 414, 485
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	4 cut(s)	137, 229, 270, 274
AlwI	GGATC	3 cut(s)	119, 132, 177
AlwNI	CAGNNNCTG	2 cut(s)	302, 437
ApoI	RAATTY	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	201, 482
BamHI	GGATCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	416
BccI	CCATC	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	2 cut(s)	129, 288
BcoDI	GTCTC	4 cut(s)	137, 229, 270, 274
Bme1390I	CCNGG	2 cut(s)	129, 288
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	2 cut(s)	129, 288
BmsI	GCATC	2 cut(s)	131, 430
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	119
BsaI	GGTCTC	2 cut(s)	137, 270
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	129, 288
BseDI	CCNNGG	1 cut(s)	287
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	212, 458
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	4 cut(s)	137, 229, 270, 274
Bso31I	GGTCTC	2 cut(s)	137, 270
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	3 cut(s)	124, 182, 345
BspACI	CCGC	2 cut(s)	144, 163
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	3 cut(s)	119, 132, 177
BspTNI	GGTCTC	2 cut(s)	137, 270
BsrDI	GCAATG	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	3 cut(s)	124, 182, 345
Bst2UI	CCWGG	2 cut(s)	129, 288
Bst4CI	ACNGT	2 cut(s)	328, 498
BstDEI	CTNAG	2 cut(s)	179, 250
BstKTI	GATC	3 cut(s)	127, 185, 348
BstMAI	GTCTC	4 cut(s)	137, 229, 270, 274
BstMBI	GATC	3 cut(s)	124, 182, 345
BstNI	CCWGG	2 cut(s)	129, 288
BstSCI	CCNGG	2 cut(s)	127, 286
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	124, 182
BstXI	CCANNNNNNTGG	1 cut(s)	76
BstYI	RGATCY	2 cut(s)	124, 182
BtsIMutI	CAGTG	2 cut(s)	316, 324
CaiI	CAGNNNCTG	2 cut(s)	302, 437
CciI	TCATGA	1 cut(s)	231
CviAII	CATG	2 cut(s)	92, 232
CviJI	RGCY	4 cut(s)	169, 247, 414, 485
CviKI_1	RGCY	4 cut(s)	169, 247, 414, 485
DdeI	CTNAG	2 cut(s)	179, 250
DpnI	GATC	3 cut(s)	126, 184, 347
DpnII	GATC	3 cut(s)	124, 182, 345
Ecl136II	GAGCTC	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	2 cut(s)	137, 270
Eco53kI	GAGCTC	1 cut(s)	414
EcoICRI	GAGCTC	1 cut(s)	414
EcoRII	CCWGG	2 cut(s)	127, 286
EcoT22I	ATGCAT	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	416
FaeI	CATG	2 cut(s)	95, 235
FaiI	YATR	9 cut(s)	66, 84, 93, 119, 233, 332, 371, 450, 504
FatI	CATG	2 cut(s)	91, 231
FauI	CCCGC	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	416
HapII	CCGG	2 cut(s)	212, 458
Hin1II	CATG	2 cut(s)	95, 235
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	4 cut(s)	237, 313, 434, 454
HpaII	CCGG	2 cut(s)	212, 458
HphI	GGTGA	2 cut(s)	201, 482
Hpy166II	GTNNAC	3 cut(s)	89, 429, 490
Hpy188I	TCNGA	2 cut(s)	376, 439
Hpy188III	TCNNGA	5 cut(s)	136, 193, 232, 310, 518
Hpy8I	GTNNAC	3 cut(s)	89, 429, 490
HpyAV	CCTTC	3 cut(s)	13, 333, 411
HpyCH4III	ACNGT	2 cut(s)	328, 498
HpyCH4V	TGCA	3 cut(s)	156, 369, 443
HpyF3I	CTNAG	2 cut(s)	179, 250
Hsp92II	CATG	2 cut(s)	95, 235
Kzo9I	GATC	3 cut(s)	124, 182, 345
LmnI	GCTCC	3 cut(s)	29, 411, 419
LpnPI	CCDG	9 cut(s)	35, 114, 141, 142, 225, 273, 300, 304, 471
LweI	GCATC	2 cut(s)	131, 430
MaeIII	GTNAC	1 cut(s)	498
MalI	GATC	3 cut(s)	126, 184, 347
MboI	GATC	3 cut(s)	124, 182, 345
MboII	GAAGA	4 cut(s)	122, 233, 348, 355
MflI	RGATCY	2 cut(s)	124, 182
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	2 cut(s)	58, 102
MlyI	GAGTC	2 cut(s)	231, 428
MnlI	CCTC	3 cut(s)	189, 208, 236
Mph1103I	ATGCAT	1 cut(s)	371
MspI	CCGG	2 cut(s)	212, 458
MspR9I	CCNGG	2 cut(s)	129, 288
MvaI	CCWGG	2 cut(s)	129, 288
NdeII	GATC	3 cut(s)	124, 182, 345
NlaIII	CATG	2 cut(s)	95, 235
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	498
NsiI	ATGCAT	1 cut(s)	371
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	313, 454
PleI	GAGTC	2 cut(s)	231, 428
PpsI	GAGTC	2 cut(s)	231, 428
PsiI	TTATAA	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	127, 286
PspGI	CCWGG	2 cut(s)	127, 286
PspN4I	GGNNCC	1 cut(s)	126
PstNI	CAGNNNCTG	2 cut(s)	302, 437
PsuI	RGATCY	2 cut(s)	124, 182
SacI	GAGCTC	1 cut(s)	416
Sau3AI	GATC	3 cut(s)	124, 182, 345
SchI	GAGTC	2 cut(s)	231, 428
ScrFI	CCNGG	2 cut(s)	129, 288
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	7 cut(s)	54, 133, 228, 249, 403, 416, 487
SfaNI	GCATC	2 cut(s)	131, 430
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	2 cut(s)	58, 102
SsiI	CCGC	2 cut(s)	144, 163
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	127, 286
TaaI	ACNGT	2 cut(s)	328, 498
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	58, 102
TfiI	GAWTC	2 cut(s)	313, 454
TscAI	CASTG	2 cut(s)	323, 331
TseFI	GTSAC	1 cut(s)	498
Tsp45I	GTSAC	1 cut(s)	498
TspDTI	ATGAA	1 cut(s)	485
TspGWI	ACGGA	2 cut(s)	137, 403
TspRI	CASTG	2 cut(s)	323, 331
XapI	RAATTY	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.