Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014750

Physical Location & Seq

Genomic Coordinates Reverse (-)

54873081 .. 54873993

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG423800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAATAGAGGAGCTTGGACTGCCCAAGAGGACAGTATCCTCGTAGATTATGTAAAAACTCATGGCGAAGGAAAGTGGAGCAAAGTTTCAAAGGAAAGAGGGAGACTTCCAGGGCGAACAGACTCTGAAATCAAGAATCACTGGAACACAGTCATAAGAAGGAAGATCATCAATGACAATAAGAAGCAATGCCAATCAGAAAATAAGAAACAAAACAACAAACCTTCTGACAGGGGTCCCCATTTGCTGCTGACTGCAGACTCTGATACAGTCCATATGAATCCGGTGAAAAATAAGAAGCTTGCTAGTACAGTTCTCCAACAGTCACAGAATGCCGGATATCTTGAAACTGATGTAAATGCAGAACCAACCCAAGATGGAAACTCAGGGAATGGTACAGTGGTAATGGAACCAAAACCTAGTAGTGATGTATCAATTTCTTCCACAGAGGGTAACCCACCAGACGACATAATGGGTAACTACTTAGAGGAGCTTTTAAGGTCCGATATTCCAGCTTTAGAATTCTGGAAATTATGCAACTTTGATAATGATACAGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

187

Amino Acids

20.91

Weight (kDa)

5.83

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 51	7.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	6 - 59	1.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32460 FvH4_5g32460
malus_domestica	MD02G1087500.v1.1 MD15G1215100.v1.1
prunus_persica	Prupe.4G204800_v2.0.a1 Prupe.4G204800_v2.0.a1
pyrus_communis	pycom02g07030 pycom15g19080
rosa_chinensis	RchiOBHm_Chr7g0229011
rosa_laevigata	RLG00000001535
rosa_roxburghii	Rroxscaffold_3G00230790 Rroxscaffold_3G00238190
rosa_rugosa	Rorug07G0254800
rosa_samantha	Rh7AG406200 Rh7CG423800 Rh7DG400600
rosa_wichuraiana	Rw7G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	2 cut(s)	310, 397
AgsI	TTSAA	2 cut(s)	90, 347
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	14, 301, 493, 515
AluI	AGCT	4 cut(s)	14, 301, 493, 515
Alw26I	GTCTC	1 cut(s)	97
AlwNI	CAGNNNCTG	2 cut(s)	125, 263
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	236, 501
AsuHPI	GGTGA	1 cut(s)	298
AvaII	GGWCC	2 cut(s)	236, 501
BaeI	ACNNNNGTAYC	3 cut(s)	387, 420, 543
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	306, 420
BfmI	CTRYAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	2 cut(s)	236, 501
BmgT120I	GGNCC	2 cut(s)	236, 501
BmiI	GGNNCC	3 cut(s)	237, 238, 411
BmrFI	CCNGG	1 cut(s)	111
BoxI	GACNNNNGTC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	24, 503
BseXI	GCAGC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	284, 336
BslFI	GGGAC	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	222
BsmI	GAATGC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	398
BspLI	GGNNCC	3 cut(s)	237, 238, 411
BspMAI	CTGCAG	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	7 cut(s)	35, 151, 271, 313, 324, 400, 556
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	2 cut(s)	385, 484
BstEII	GGTNACC	1 cut(s)	452
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	111
BstPAI	GACNNNNGTC	1 cut(s)	234
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	47
BtsIMutI	CAGTG	2 cut(s)	139, 405
Cac8I	GCNNGC	1 cut(s)	303
CaiI	CAGNNNCTG	2 cut(s)	125, 263
Cfr13I	GGNCC	2 cut(s)	236, 501
Csp6I	GTAC	2 cut(s)	309, 396
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	4 cut(s)	14, 301, 493, 515
CviKI_1	RGCY	4 cut(s)	14, 301, 493, 515
CviQI	GTAC	2 cut(s)	309, 396
DdeI	CTNAG	2 cut(s)	385, 484
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	2 cut(s)	236, 501
Eco91I	GGTNACC	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	521
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	341
FaeI	CATG	1 cut(s)	65
FaiI	YATR	8 cut(s)	51, 63, 155, 276, 278, 470, 535, 562
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	2 cut(s)	306, 420
GluI	GCNGC	1 cut(s)	248
HapII	CCGG	2 cut(s)	284, 336
Hin1II	CATG	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	4 cut(s)	122, 136, 260, 280
HpaII	CCGG	2 cut(s)	284, 336
HphI	GGTGA	1 cut(s)	298
Hpy188I	TCNGA	5 cut(s)	127, 199, 229, 265, 505
Hpy188III	TCNNGA	3 cut(s)	133, 344, 526
HpyAV	CCTTC	3 cut(s)	62, 153, 234
HpyCH4III	ACNGT	7 cut(s)	35, 151, 271, 313, 324, 400, 556
HpyCH4V	TGCA	3 cut(s)	257, 362, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	385, 484
Hsp92II	CATG	1 cut(s)	65
KflI	GGGWCCC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	11, 78, 490
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	306, 420
MaeIII	GTNAC	3 cut(s)	324, 452, 476
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	2 cut(s)	175, 432
MluCI	AATT	3 cut(s)	435, 521, 530
MlyI	GAGTC	2 cut(s)	116, 254
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	5 cut(s)	22, 50, 92, 442, 481
MseI	TTAA	1 cut(s)	497
MspI	CCGG	2 cut(s)	284, 336
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeI	CATATG	1 cut(s)	276
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	237, 238, 411
NmuCI	GTSAC	1 cut(s)	324
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	2 cut(s)	136, 280
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	2 cut(s)	116, 254
PpsI	GAGTC	2 cut(s)	116, 254
PpuMI	RGGWCCY	1 cut(s)	236
PshAI	GACNNNNGTC	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	109
PspEI	GGTNACC	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	237, 238, 411
PspPI	GGNCC	2 cut(s)	236, 501
PspPPI	RGGWCCY	1 cut(s)	236
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	2 cut(s)	125, 263
RsaI	GTAC	2 cut(s)	310, 397
RsaNI	GTAC	2 cut(s)	309, 396
SaqAI	TTAA	1 cut(s)	497
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	236, 501
SchI	GAGTC	2 cut(s)	116, 254
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	7 cut(s)	16, 226, 303, 421, 495, 503, 517
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	236, 501
Sse9I	AATT	3 cut(s)	435, 521, 530
SspMI	CTAG	2 cut(s)	306, 420
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	7 cut(s)	35, 151, 271, 313, 324, 400, 556
TasI	AATT	3 cut(s)	435, 521, 530
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	136, 280
Tru1I	TTAA	1 cut(s)	497
Tru9I	TTAA	1 cut(s)	497
TscAI	CASTG	2 cut(s)	146, 405
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	17, 293
TspRI	CASTG	2 cut(s)	146, 405
VpaK11BI	GGWCC	2 cut(s)	236, 501
XapI	RAATTY	1 cut(s)	521
XspI	CTAG	2 cut(s)	306, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.