Rroxscaffold_3G00230790
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014750
Physical Location & Seq
Forward (+)
15680773 .. 15681679
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230790.1

Sequence Viewer

Length: 561 bp
ATGAAGAGAGGAGCTTGGACTGCCCAAGAGGACAGTATCCTCGTAGATCATGTAAAAACTCATGGCGAAGGAAAGTGGAGCAAAGTTTCAAAGGAAAGAGGGAGACTTCCAGGGCGAACAGACTCTGAAATCAAGAATCACTGGAACACAGTCATAAGAAGGAAGATCATCAATGACAATAAGAAGCAATGCCAATCAGAAAATAAGAAACAAAACAACAAACCTTCTGACAGGGGGCCCCATTTGCTGCTGACAGACTCTGATACAGTCCATATGAATCCGGTGAAAAATAAGAAGCTTGCTAGTACTGTTCTCCAACAGTCACAGAATGCCGGATATCTTGAAACTGATGTAAATGCAGAACCAACCCAAGATGGAAACTCAGGGAATGGTACAGTGGTAATGGAACCAAAACCTAGTAGTGATGTATCAATTTCTTCCACAGAGGGTAACCCACCAGACGACATAATGGGTTACTACTTAGAGGAGCTTTTAAGGTCCGATATTCCAGCTTTAGAATTCTGGAAATTATGCAACTTTGATAATGATACAGTCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

186

Amino Acids

20.87

Weight (kDa)

6.21

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 3 - 51 3.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 6 - 59 1.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 2 cut(s) 307, 394
AgsI TTSAA 2 cut(s) 90, 344
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 4 cut(s) 14, 298, 490, 512
AluI AGCT 4 cut(s) 14, 298, 490, 512
Alw26I GTCTC 1 cut(s) 97
AlwNI CAGNNNCTG 2 cut(s) 125, 260
AoxI GGCC 1 cut(s) 236
ApaI GGGCCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 518
AspS9I GGNCC 3 cut(s) 236, 237, 498
AsuHPI GGTGA 1 cut(s) 295
AvaII GGWCC 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 240
BaeI ACNNNNGTAYC 3 cut(s) 384, 417, 540
BanII GRGCYC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 368
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 303, 417
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 3 cut(s) 236, 237, 498
BmiI GGNNCC 4 cut(s) 237, 238, 239, 408
BmrFI CCNGG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 146
Bse3DI GCAATG 1 cut(s) 194
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 24, 500
BseSI GKGCMC 1 cut(s) 240
BseXI GCAGC 1 cut(s) 234
BshFI GGCC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 281, 333
BsmAI GTCTC 1 cut(s) 97
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 1 cut(s) 238
Bsp120I GGGCCC 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 46, 165
BspANI GGCC 1 cut(s) 238
BspCNI CTCAG 1 cut(s) 395
BspLI GGNNCC 4 cut(s) 237, 238, 239, 408
BsrDI GCAATG 1 cut(s) 194
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 2 cut(s) 46, 165
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 7 cut(s) 35, 151, 268, 310, 321, 397, 553
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 382, 481
BstEII GGTNACC 1 cut(s) 449
BstKTI GATC 2 cut(s) 49, 168
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 46, 165
BstMWI GCNNNNNNNGC 2 cut(s) 20, 244
BstNI CCWGG 1 cut(s) 111
BstPI GGTNACC 1 cut(s) 449
BstSCI CCNGG 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 234
BsuI GTATCC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 139, 402
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 2 cut(s) 125, 260
Cfr13I GGNCC 3 cut(s) 236, 237, 498
Csp6I GTAC 2 cut(s) 306, 393
CviAII CATG 2 cut(s) 50, 62
CviJI RGCY 5 cut(s) 14, 238, 298, 490, 512
CviKI_1 RGCY 5 cut(s) 14, 238, 298, 490, 512
CviQI GTAC 2 cut(s) 306, 393
DdeI CTNAG 2 cut(s) 382, 481
DpnI GATC 2 cut(s) 48, 167
DpnII GATC 2 cut(s) 46, 165
Eco24I GRGCYC 1 cut(s) 240
Eco32I GATATC 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 498
Eco91I GGTNACC 1 cut(s) 449
EcoO109I RGGNCCY 2 cut(s) 236, 237
EcoO65I GGTNACC 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 109
EcoRV GATATC 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 240
FaeI CATG 2 cut(s) 53, 65
FaiI YATR 8 cut(s) 51, 63, 155, 273, 275, 467, 532, 559
FatI CATG 2 cut(s) 49, 61
FauNDI CATATG 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 248
FspBI CTAG 2 cut(s) 303, 417
GluI GCNGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 238
HapII CCGG 2 cut(s) 281, 333
Hin1II CATG 2 cut(s) 53, 65
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 4 cut(s) 122, 136, 257, 277
HpaII CCGG 2 cut(s) 281, 333
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 5 cut(s) 127, 199, 229, 262, 502
Hpy188III TCNNGA 3 cut(s) 133, 341, 523
HpyAV CCTTC 3 cut(s) 62, 153, 234
HpyCH4III ACNGT 7 cut(s) 35, 151, 268, 310, 321, 397, 553
HpyCH4V TGCA 2 cut(s) 359, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 244
HpyF3I CTNAG 2 cut(s) 382, 481
Hsp92II CATG 2 cut(s) 53, 65
Kzo9I GATC 2 cut(s) 46, 165
LmnI GCTCC 3 cut(s) 11, 78, 487
Lsp1109I GCAGC 1 cut(s) 234
MaeI CTAG 2 cut(s) 303, 417
MaeIII GTNAC 3 cut(s) 321, 449, 473
MalI GATC 2 cut(s) 48, 167
MboI GATC 2 cut(s) 46, 165
MboII GAAGA 3 cut(s) 16, 175, 429
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 3 cut(s) 432, 518, 527
MlyI GAGTC 2 cut(s) 116, 251
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 5 cut(s) 22, 50, 92, 439, 478
MseI TTAA 1 cut(s) 494
MspI CCGG 2 cut(s) 281, 333
MspR9I CCNGG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 20, 244
NdeI CATATG 1 cut(s) 273
NdeII GATC 2 cut(s) 46, 165
NlaIII CATG 2 cut(s) 53, 65
NlaIV GGNNCC 4 cut(s) 237, 238, 239, 408
NmuCI GTSAC 1 cut(s) 321
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 136, 277
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 2 cut(s) 116, 251
PpsI GAGTC 2 cut(s) 116, 251
Psp6I CCWGG 1 cut(s) 109
PspEI GGTNACC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 4 cut(s) 237, 238, 239, 408
PspOMI GGGCCC 1 cut(s) 236
PspPI GGNCC 3 cut(s) 236, 237, 498
PstNI CAGNNNCTG 2 cut(s) 125, 260
RsaI GTAC 2 cut(s) 307, 394
RsaNI GTAC 2 cut(s) 306, 393
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 2 cut(s) 46, 165
Sau96I GGNCC 3 cut(s) 236, 237, 498
ScaI AGTACT 1 cut(s) 307
SchI GAGTC 2 cut(s) 116, 251
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 16, 226, 300, 418, 492, 500, 514
SinI GGWCC 1 cut(s) 498
Sse9I AATT 3 cut(s) 432, 518, 527
SspMI CTAG 2 cut(s) 303, 417
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 7 cut(s) 35, 151, 268, 310, 321, 397, 553
TasI AATT 3 cut(s) 432, 518, 527
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 2 cut(s) 136, 277
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 2 cut(s) 146, 402
TseFI GTSAC 1 cut(s) 321
TseI GCWGC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 2 cut(s) 17, 290
TspRI CASTG 2 cut(s) 146, 402
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 1 cut(s) 518
XspI CTAG 2 cut(s) 303, 417
ZrmI AGTACT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.