Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014750

Physical Location & Seq

Genomic Coordinates Reverse (-)

53560867 .. 53561777

Gene Structure 911 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG406200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATAGAGGAGCTTGGACTGCCCAAGAGGACAGTATCCTCGTAGATTATGTAAAAACTCATGGCGAAGGAAAGTGGAGCAAAGTTTCAAAGGAAAGAGGTCTCAAGAGATGCGGGAAAAGCTGCAGGATGCGGTGGATGAACTATCTCAGACCCAATATCAAGAGGGGTAATATCTCACCTGAGGAAGAGGACCTCATCATGAGGCTCCACAAGCTCTTAGGCAACAGATGGTCTCTCATTGCAGGGAGACTTCCAGGGCGAACAGACTCTGAAATCAAGAATCACTGGAACACAGTCATAAGAAGGAAGATCATCAATGACAATAAGAAGCAATGCCAATCAGAAAATAAGAAACAAAACAACAAACCTTCTGACAGGGGCCCCCATTTGCTGCTGACAGACTCTGATACAGTCCATATGAATCCGGTGAAAAATAAGAAGCTTGCTAGTACTGTTCAACAGTCACAGAATGCCGGATATCTTGAAACTGATGTAAATGCAGAAGCAACCCAAGATGGAAACTCAGGGAATGGTACAGTGGTAATGGAACCAAAACCTAGTAGTGATGTATCAATTTCTTCCACAGAGGGTAACCCACCAGACGACATAATGGGTAACTACTTAGAGGAGCTTTTAAGGTCCGATATTCCAGCTTTAGAATTCTGGAAATTATGCAACTTTGATAATGATACAGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

234

Amino Acids

26.53

Weight (kDa)

8.81

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 50	6.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	6 - 64	8.9e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	56 - 100	1.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	60 - 108	6.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32460 FvH4_5g32460
malus_domestica	MD02G1087500.v1.1 MD15G1215100.v1.1
prunus_persica	Prupe.4G204800_v2.0.a1 Prupe.4G204800_v2.0.a1
pyrus_communis	pycom02g07030 pycom15g19080
rosa_chinensis	RchiOBHm_Chr7g0229011
rosa_laevigata	RLG00000001535
rosa_roxburghii	Rroxscaffold_3G00230790 Rroxscaffold_3G00238190
rosa_rugosa	Rorug07G0254800
rosa_samantha	Rh7AG406200 Rh7CG423800 Rh7DG400600
rosa_wichuraiana	Rw7G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 133
AcsI	RAATTY	1 cut(s)	662
AfaI	GTAC	2 cut(s)	454, 538
AgsI	TTSAA	3 cut(s)	90, 461, 488
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	6 cut(s)	14, 123, 217, 445, 634, 656
AluI	AGCT	6 cut(s)	14, 123, 217, 445, 634, 656
Alw26I	GTCTC	3 cut(s)	107, 240, 244
AlwNI	CAGNNNCTG	2 cut(s)	272, 407
AoxI	GGCC	1 cut(s)	382
ApaI	GGGCCC	1 cut(s)	386
ApeKI	GCWGC	2 cut(s)	123, 394
ApoI	RAATTY	1 cut(s)	662
AspS9I	GGNCC	4 cut(s)	193, 382, 383, 642
AsuHPI	GGTGA	2 cut(s)	171, 442
AvaII	GGWCC	2 cut(s)	193, 642
AxyI	CCTNAGG	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	386
BaeI	ACNNNNGTAYC	3 cut(s)	528, 561, 684
BanII	GRGCYC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	110, 381
BccI	CCATC	2 cut(s)	225, 512
BciT130I	CCWGG	1 cut(s)	258
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	107, 240, 244
BfaI	CTAG	2 cut(s)	450, 561
BfmI	CTRYAG	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	124, 395
BlsI	GCNGC	2 cut(s)	125, 396
BmcAI	AGTACT	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	193, 642
BmgT120I	GGNCC	4 cut(s)	193, 382, 383, 642
BmiI	GGNNCC	5 cut(s)	209, 383, 384, 385, 552
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	101, 120
BpuEI	CTTGAG	1 cut(s)	89
BsaI	GGTCTC	2 cut(s)	107, 240
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	2 cut(s)	240, 341
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	135, 144
BseMI	GCAATG	2 cut(s)	240, 341
BseMII	CTCAG	3 cut(s)	163, 174, 540
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	2 cut(s)	24, 644
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	110, 381
BshFI	GGCC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	428, 477
BsmAI	GTCTC	3 cut(s)	107, 240, 244
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	384
Bso31I	GGTCTC	2 cut(s)	107, 240
Bsp120I	GGGCCC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	114, 133
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	3 cut(s)	162, 175, 539
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	5 cut(s)	209, 383, 384, 385, 552
BspMAI	CTGCAG	1 cut(s)	128
BspTNI	GGTCTC	2 cut(s)	107, 240
BsrDI	GCAATG	2 cut(s)	240, 341
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	7 cut(s)	35, 298, 415, 457, 465, 541, 697
Bst6I	CTCTTC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	5 cut(s)	149, 183, 220, 526, 625
BstEII	GGTNACC	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	135, 144
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	3 cut(s)	107, 240, 244
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 120, 214
BstNI	CCWGG	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	124
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	110, 381
Bsu36I	CCTNAGG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	135, 144
BtsIMutI	CAGTG	2 cut(s)	286, 546
Cac8I	GCNNGC	1 cut(s)	447
CaiI	CAGNNNCTG	2 cut(s)	272, 407
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	4 cut(s)	193, 382, 383, 642
Csp6I	GTAC	2 cut(s)	453, 537
CviAII	CATG	2 cut(s)	62, 202
CviJI	RGCY	8 cut(s)	14, 123, 208, 217, 384, 445, 634, 656
CviKI_1	RGCY	8 cut(s)	14, 123, 208, 217, 384, 445, 634, 656
CviQI	GTAC	2 cut(s)	453, 537
DdeI	CTNAG	5 cut(s)	149, 183, 220, 526, 625
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	386
Eco31I	GGTCTC	2 cut(s)	107, 240
Eco32I	GATATC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	193, 642
Eco81I	CCTNAGG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	593
EcoO109I	RGGNCCY	3 cut(s)	193, 382, 383
EcoO65I	GGTNACC	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	256
EcoRV	GATATC	1 cut(s)	482
EcoT38I	GRGCYC	1 cut(s)	386
FaeI	CATG	2 cut(s)	65, 205
FaiI	YATR	9 cut(s)	51, 63, 203, 302, 420, 422, 611, 676, 703
FatI	CATG	2 cut(s)	61, 201
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	420
Fnu4HI	GCNGC	2 cut(s)	124, 395
FokI	GGATG	2 cut(s)	142, 151
FriOI	GRGCYC	1 cut(s)	386
Fsp4HI	GCNGC	2 cut(s)	124, 395
FspBI	CTAG	2 cut(s)	450, 561
GluI	GCNGC	2 cut(s)	124, 395
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	2 cut(s)	428, 477
Hin1II	CATG	2 cut(s)	65, 205
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	4 cut(s)	269, 283, 404, 424
HpaII	CCGG	2 cut(s)	428, 477
HphI	GGTGA	2 cut(s)	171, 442
Hpy188I	TCNGA	6 cut(s)	152, 274, 346, 376, 409, 646
Hpy188III	TCNNGA	6 cut(s)	106, 163, 202, 280, 485, 667
HpyAV	CCTTC	3 cut(s)	62, 300, 381
HpyCH4III	ACNGT	7 cut(s)	35, 298, 415, 457, 465, 541, 697
HpyCH4V	TGCA	4 cut(s)	126, 245, 503, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 120, 214
HpyF3I	CTNAG	5 cut(s)	149, 183, 220, 526, 625
Hsp92II	CATG	2 cut(s)	65, 205
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	4 cut(s)	11, 78, 213, 631
Lsp1109I	GCAGC	2 cut(s)	110, 381
LweI	GCATC	2 cut(s)	101, 120
MaeI	CTAG	2 cut(s)	450, 561
MaeIII	GTNAC	3 cut(s)	465, 593, 617
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	3 cut(s)	200, 322, 573
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	3 cut(s)	576, 662, 671
MlyI	GAGTC	2 cut(s)	263, 398
MseI	TTAA	1 cut(s)	638
MspI	CCGG	2 cut(s)	428, 477
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	20, 120, 214
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	2 cut(s)	65, 205
NlaIV	GGNNCC	5 cut(s)	209, 383, 384, 385, 552
NmuCI	GTSAC	1 cut(s)	465
PagI	TCATGA	1 cut(s)	201
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	283, 424
PkrI	GCNGC	2 cut(s)	125, 396
PleI	GAGTC	2 cut(s)	263, 398
PpsI	GAGTC	2 cut(s)	263, 398
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	5 cut(s)	209, 383, 384, 385, 552
PspOMI	GGGCCC	1 cut(s)	382
PspPI	GGNCC	4 cut(s)	193, 382, 383, 642
PspPPI	RGGWCCY	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	2 cut(s)	272, 407
RsaI	GTAC	2 cut(s)	454, 538
RsaNI	GTAC	2 cut(s)	453, 537
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	2 cut(s)	124, 395
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	4 cut(s)	193, 382, 383, 642
ScaI	AGTACT	1 cut(s)	454
SchI	GAGTC	2 cut(s)	263, 398
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	386
SfaNI	GCATC	2 cut(s)	101, 120
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	2 cut(s)	193, 642
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	576, 662, 671
SsiI	CCGC	2 cut(s)	114, 133
SspMI	CTAG	2 cut(s)	450, 561
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	7 cut(s)	35, 298, 415, 457, 465, 541, 697
TasI	AATT	3 cut(s)	576, 662, 671
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	283, 424
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	2 cut(s)	293, 546
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	2 cut(s)	123, 394
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	17, 155, 437
TspRI	CASTG	2 cut(s)	293, 546
VpaK11BI	GGWCC	2 cut(s)	193, 642
XapI	RAATTY	1 cut(s)	662
XspI	CTAG	2 cut(s)	450, 561
ZrmI	AGTACT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.