MD15G1215100.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014750
Physical Location & Seq
Forward (+)
17312772 .. 17313878
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1215100.v1.1.491

Sequence Viewer

Length: 567 bp
ATGGGGAGAAAACCATACGGTGATACAGACGGGCTAAAAAGAGGAGCATGGTGTGCTGAGGAAGATAAAGTCCTTACTGACTACATCAGAACACATGGAGAAGGAAATGGAGACATGTTGCTAAAAAAGCCGGTTCGGTTGAATCGGAGTGGGAAGAGTTGCAGACTGCGATGGTTGAATTATCTTAAGCCTGATATTAAGAGAGGCAACATTTCTCCGGAAGAAGAAGACCTCATTATCAGATTGCAAAAGCTTCTTGGAAACAGATATGACATATTTTTGCACATTAATAGTGTGAATCCCAGGTCGGTGAAGTGGTCTCTCATAGCCGGAAGATTGCCCGGTCAAACAGACAATGAAATCAAGAACTTCTGGAATATTAGTTTGAGCAAAAGAATTCAAGAGGAAAGACCTCGACGTGGCACTAACAGCAGTCAGGCGCCTAATGATGGCGATAATCGTCATCAACTTAGTAATTATTGTTCTAATCCTTCCAAAGACGACGATGATCAATCCAATCCGGTGGTACTATCAGACATCTCTGGTGACCGTGATATAAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009653 GO:0009698 GO:0009699 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010023 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0072330 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

189

Amino Acids

21.5

Weight (kDa)

8.97

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 62 2.3e-07 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 1.8e-07 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 126 5.2e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 439
AccIII TCCGGA 1 cut(s) 217
AcsI RAATTY 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 1 cut(s) 528
AfiI CCNNNNNNNGG 2 cut(s) 419, 449
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 114
AgsI TTSAA 3 cut(s) 142, 178, 401
AjiI CACGTC 1 cut(s) 419
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 2 cut(s) 105, 324
Aor13HI TCCGGA 1 cut(s) 217
ApoI RAATTY 1 cut(s) 396
AseI ATTAAT 1 cut(s) 288
AspLEI GCGC 1 cut(s) 442
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 32, 322, 557
BanI GGYRCC 1 cut(s) 439
BbsI GAAGAC 1 cut(s) 234
BbvCI CCTCAGC 1 cut(s) 57
BccI CCATC 2 cut(s) 165, 443
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 2 cut(s) 105, 324
BfaI CTAG 1 cut(s) 565
BfoI RGCGCY 1 cut(s) 443
BfrI CTTAAG 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 304, 342
BmgBI CACGTC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 441
BmrFI CCNGG 2 cut(s) 304, 342
BpiI GAAGAC 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 440
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 302
BsaWI WCCGGW 2 cut(s) 217, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 419, 449
Bse118I RCCGGY 1 cut(s) 130
BseAI TCCGGA 1 cut(s) 217
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 302
BseLI CCNNNNNNNGG 2 cut(s) 419, 449
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 439
BsiSI CCGG 5 cut(s) 131, 218, 330, 342, 521
BslI CCNNNNNNNGG 2 cut(s) 419, 449
BsmAI GTCTC 2 cut(s) 105, 324
Bso31I GGTCTC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 49
BspEI TCCGGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 439
BspTI CTTAAG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 1 cut(s) 508
BssNI GRCGYC 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 2 cut(s) 20, 551
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 440
BstAFI CTTAAG 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 57, 470
BstEII GGTNACC 1 cut(s) 545
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 1 cut(s) 511
BstMAI GTCTC 2 cut(s) 105, 324
BstMBI GATC 1 cut(s) 508
BstMWI GCNNNNNNNGC 3 cut(s) 53, 127, 429
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 118
BstPI GGTNACC 1 cut(s) 545
BstSCI CCNGG 2 cut(s) 302, 340
BstV2I GAAGAC 1 cut(s) 234
BstXI CCANNNNNNTGG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 184
BtrI CACGTC 1 cut(s) 419
CfoI GCGC 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 130
Csp6I GTAC 1 cut(s) 527
CviAII CATG 3 cut(s) 48, 95, 115
CviJI RGCY 5 cut(s) 34, 130, 190, 253, 329
CviKI_1 RGCY 5 cut(s) 34, 130, 190, 253, 329
CviQI GTAC 1 cut(s) 527
DdeI CTNAG 2 cut(s) 57, 470
DinI GGCGCC 1 cut(s) 441
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 324
Eco91I GGTNACC 1 cut(s) 545
EcoO65I GGTNACC 1 cut(s) 545
EcoRI GAATTC 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 302
EgeI GGCGCC 1 cut(s) 441
EheI GGCGCC 1 cut(s) 441
FaeI CATG 3 cut(s) 51, 98, 118
FaiI YATR 8 cut(s) 16, 49, 96, 116, 270, 275, 326, 557
FatI CATG 3 cut(s) 47, 94, 114
FbaI TGATCA 1 cut(s) 508
FspBI CTAG 1 cut(s) 565
GlaI GCGC 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 443
HapII CCGG 5 cut(s) 131, 218, 330, 342, 521
HhaI GCGC 1 cut(s) 442
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 3 cut(s) 51, 98, 118
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 142, 298
HpaII CCGG 5 cut(s) 131, 218, 330, 342, 521
HphI GGTGA 3 cut(s) 32, 322, 557
Hpy188I TCNGA 4 cut(s) 89, 147, 242, 535
Hpy188III TCNNGA 4 cut(s) 218, 364, 373, 401
Hpy99I CGWCG 2 cut(s) 420, 506
HpyAV CCTTC 2 cut(s) 95, 501
HpyCH4III ACNGT 2 cut(s) 20, 551
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 162, 247, 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 127, 429
HpyF3I CTNAG 2 cut(s) 57, 470
HpySE526I ACGT 1 cut(s) 418
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 3 cut(s) 51, 98, 118
HspAI GCGC 1 cut(s) 440
KasI GGCGCC 1 cut(s) 439
Kpn2I TCCGGA 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 1 cut(s) 508
LmnI GCTCC 1 cut(s) 44
MaeI CTAG 1 cut(s) 565
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 1 cut(s) 545
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MboII GAAGA 6 cut(s) 74, 166, 233, 236, 239, 345
MluCI AATT 3 cut(s) 178, 396, 475
Mly113I GGCGCC 1 cut(s) 440
MnlI CCTC 6 cut(s) 35, 52, 197, 242, 397, 423
MroI TCCGGA 1 cut(s) 217
MseI TTAA 3 cut(s) 186, 198, 288
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 5 cut(s) 131, 218, 330, 342, 521
MspR9I CCNGG 2 cut(s) 304, 342
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 53, 127, 429
NarI GGCGCC 1 cut(s) 440
NciI CCSGG 1 cut(s) 342
NdeII GATC 1 cut(s) 508
NlaIII CATG 3 cut(s) 51, 98, 118
NlaIV GGNNCC 1 cut(s) 441
NmuCI GTSAC 1 cut(s) 545
NspI RCATGY 1 cut(s) 118
PciI ACATGT 1 cut(s) 114
PfeI GAWTC 2 cut(s) 142, 298
PluTI GGCGCC 1 cut(s) 443
PscI ACATGT 1 cut(s) 114
PshBI ATTAAT 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 302
PspEI GGTNACC 1 cut(s) 545
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 441
PsrI GAACNNNNNNTAC 2 cut(s) 466, 498
RsaI GTAC 1 cut(s) 528
RsaNI GTAC 1 cut(s) 527
SaqAI TTAA 3 cut(s) 186, 198, 288
Sau3AI GATC 1 cut(s) 508
ScrFI CCNGG 2 cut(s) 304, 342
SetI ASST 5 cut(s) 234, 255, 308, 415, 421
SfoI GGCGCC 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 3 cut(s) 178, 396, 475
SspDI GGCGCC 1 cut(s) 439
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 565
StyD4I CCNGG 2 cut(s) 302, 340
TaaI ACNGT 2 cut(s) 20, 551
TaiI ACGT 1 cut(s) 421
TaqI TCGA 1 cut(s) 415
TasI AATT 3 cut(s) 178, 396, 475
TfiI GAWTC 2 cut(s) 142, 298
Tru1I TTAA 3 cut(s) 186, 198, 288
Tru9I TTAA 3 cut(s) 186, 198, 288
TseFI GTSAC 1 cut(s) 545
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 372
Vha464I CTTAAG 1 cut(s) 185
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 1 cut(s) 396
XceI RCATGY 1 cut(s) 118
XspI CTAG 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.