Rroxscaffold_3G00238190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014750
Physical Location & Seq
Forward (+)
26362018 .. 26364175
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00238190.1

Sequence Viewer

Length: 321 bp
ATGCTGACAGACACTGATGCAGTTCATATCAACCCGGTGAAAAATAAGAAGCCTGCTAGTACTGTTCTCCAACATTCACAGCATGCCGAAAATCTTGAAACTGAATTTCATGCAGAACCAACCAAGATGGAAACTCAGGGAATGGTAATGTGGCAATGGAACCAAAACCTGGTGGTGATGTATCAATTTCTTCGACATAGGGCGCTGACCTTGCTCTTGCTTGAGCCTGAACCATTAAGCCTTTTATTCTTTGCACTTGGCTACCATGATCGTGTCACAGAGGACGAGAACAGCACCAGTTTAAGTTGGTTAAATCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.33

Weight (kDa)

5.36

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 169
AcsI RAATTY 1 cut(s) 104
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 1 cut(s) 98
AjnI CCWGG 1 cut(s) 168
AlwNI CAGNNNCTG 1 cut(s) 14
ApoI RAATTY 1 cut(s) 104
AspLEI GCGC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 49, 187
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 1 cut(s) 35
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 2 cut(s) 35, 170
BmiI GGNNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 35, 170
BmsI GCATC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 161
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 169
Bsp143I GATC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 161
BsrI ACTGG 1 cut(s) 297
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 2 cut(s) 54, 84
BstDEI CTNAG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 33, 168
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 54, 84
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 1 cut(s) 205
CsiI ACCWGGT 1 cut(s) 168
Csp6I GTAC 1 cut(s) 60
CviAII CATG 3 cut(s) 83, 110, 266
CviJI RGCY 4 cut(s) 52, 226, 240, 261
CviKI_1 RGCY 4 cut(s) 52, 226, 240, 261
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 135
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 3 cut(s) 86, 113, 269
FaiI YATR 5 cut(s) 27, 84, 111, 198, 267
FatI CATG 3 cut(s) 82, 109, 265
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 206
HapII CCGG 1 cut(s) 35
HhaI GCGC 1 cut(s) 205
Hin1II CATG 3 cut(s) 86, 113, 269
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HpaII CCGG 1 cut(s) 35
HphI GGTGA 2 cut(s) 49, 187
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 3 cut(s) 20, 113, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 135
Hsp92II CATG 3 cut(s) 86, 113, 269
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 268
LpnPI CCDG 7 cut(s) 48, 66, 122, 155, 182, 240, 310
LweI GCATC 1 cut(s) 7
MabI ACCWGGT 1 cut(s) 168
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 1 cut(s) 182
MluCI AATT 2 cut(s) 104, 185
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 1 cut(s) 274
MseI TTAA 3 cut(s) 236, 302, 311
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 35, 170
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 35
NdeII GATC 1 cut(s) 268
NlaIII CATG 3 cut(s) 86, 113, 269
NlaIV GGNNCC 1 cut(s) 161
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 86
PaeI GCATGC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 169
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 3 cut(s) 236, 302, 311
Sau3AI GATC 1 cut(s) 268
ScaI AGTACT 1 cut(s) 61
ScrFI CCNGG 2 cut(s) 35, 170
SetI ASST 2 cut(s) 171, 212
SexAI ACCWGGT 1 cut(s) 168
SfaNI GCATC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
SphI GCATGC 1 cut(s) 86
Sse9I AATT 2 cut(s) 104, 185
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 33, 168
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 104, 185
TatI WGTACW 1 cut(s) 59
Tru1I TTAA 3 cut(s) 236, 302, 311
Tru9I TTAA 3 cut(s) 236, 302, 311
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 14, 98
TspRI CASTG 1 cut(s) 19
Van91I CCANNNNNTGG 1 cut(s) 169
XapI RAATTY 1 cut(s) 104
XceI RCATGY 1 cut(s) 86
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.