MD02G1087500.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0014750
Physical Location & Seq
Forward (+)
6849888 .. 6851996
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1087500.v1.1.491

Sequence Viewer

Length: 819 bp
ATGGGGAGAAAACCATCCGGTGATACAGACGGGCTAAAAAGAGGAGCATGGTGTGCTGAGGAAGATGAAGTCCTTACTGACTACGTCAAAACACATGGAGAAGGACAATGGAGACATGTTGCTAAAAAAGCTGGGTTGAATCGAAGTGGGAAGAGTTGCAGACTGCGATGGTTGAATTATCTTAAACCAGGTGTTAAGAGAGGCAACATTTCTCCGGAAGAAGAAGACCTCATTATCAGATTGCACAAGCTTCTTGGAAACAGGTGGTCTCTCATAGCCGGAAGATTGCCTGGTCGAACAGATAATGAAATCAAGAATTTCTGGAATATCAGTTTGAGCAAGAGAATTCAAGAAGAAAGACCTCAACGTATAATTAATAACAAGCAAGCGCCTAATGCTGGCGATAGTCATCATCAACGTGGTAATTATTGTTCTAATCCTTCCAAAGATGAAGATGGTCAATCCAATCCAGTGAAATCCAATCCGGTGGCACTATCAGACATCTCAGATGATCGTGATCAGAATTCGTCGTTGAGTTTTCTAAGAGATTTCGACAGTTACATCCATGGCCTTTCACACGAGGCCGAAATCAATGGATTTGGAAATTATGTGGTGGATGATTCGAACTTTGTTGGACATGGTAATGGAACCAAGTGTGAGGATTTAGTACTAAGGGAGGATGCAGAAGCCGCAAAGTGGAAAAATGTGGGTGCTACCAGTGATCACTTGTTATTTCAACCAAACCACGAAGATGTAGACCTCTATGCAATTTCAGCTTTTCTCAATTCACAAGATGGCTATCATCAGTGGGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009653 GO:0009698 GO:0009699 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010023 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0072330 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

273

Amino Acids

30.66

Weight (kDa)

6.13

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 3.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 7.2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 109 4.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 117 4.6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 756
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 1 cut(s) 690
AcsI RAATTY 3 cut(s) 316, 345, 523
AfaI GTAC 1 cut(s) 669
AfiI CCNNNNNNNGG 2 cut(s) 398, 696
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 4 cut(s) 139, 175, 350, 737
AjnI CCWGG 2 cut(s) 187, 289
AluBI AGCT 3 cut(s) 131, 250, 776
AluI AGCT 3 cut(s) 131, 250, 776
Alw26I GTCTC 2 cut(s) 106, 273
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 2 cut(s) 568, 582
ApoI RAATTY 3 cut(s) 316, 345, 523
AseI ATTAAT 1 cut(s) 375
AspLEI GCGC 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 32
AsuII TTCGAA 1 cut(s) 623
BauI CACGAG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 57
BccI CCATC 4 cut(s) 22, 162, 449, 788
BciT130I CCWGG 2 cut(s) 189, 291
BclI TGATCA 2 cut(s) 517, 721
BcoDI GTCTC 2 cut(s) 106, 273
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 1 cut(s) 690
BlsI GCNGC 1 cut(s) 691
BmcAI AGTACT 1 cut(s) 669
Bme1390I CCNGG 2 cut(s) 189, 291
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 2 cut(s) 189, 291
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 623
BsaBI GATNNNNATC 3 cut(s) 408, 516, 798
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 565
BsaWI WCCGGW 3 cut(s) 17, 214, 484
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 696
Bse1I ACTGG 2 cut(s) 470, 717
Bse8I GATNNNNATC 3 cut(s) 408, 516, 798
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 2 cut(s) 189, 291
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 4 cut(s) 14, 561, 622, 685
BseJI GATNNNNATC 3 cut(s) 408, 516, 798
BseLI CCNNNNNNNGG 2 cut(s) 398, 696
BseMII CTCAG 2 cut(s) 48, 519
BseNI ACTGG 2 cut(s) 470, 717
BseRI GAGGAG 1 cut(s) 57
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 2 cut(s) 570, 584
BsiSI CCGG 4 cut(s) 18, 215, 279, 485
BslI CCNNNNNNNGG 2 cut(s) 398, 696
BsmAI GTCTC 2 cut(s) 106, 273
BsnI GGCC 2 cut(s) 570, 584
Bso31I GGTCTC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 623
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 3 cut(s) 511, 517, 721
Bsp19I CCATGG 1 cut(s) 565
BspACI CCGC 1 cut(s) 690
BspANI GGCC 2 cut(s) 570, 584
BspCNI CTCAG 2 cut(s) 49, 518
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 649
BspT104I TTCGAA 1 cut(s) 623
BspTNI GGTCTC 1 cut(s) 273
BsrI ACTGG 2 cut(s) 470, 717
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 3 cut(s) 511, 517, 721
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 578
Bst2UI CCWGG 2 cut(s) 189, 291
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 146
BstAPI GCANNNNNTGC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 387, 400
BstDEI CTNAG 4 cut(s) 57, 505, 542, 671
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 4 cut(s) 14, 561, 622, 685
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 514, 520, 724
BstMAI GTCTC 2 cut(s) 106, 273
BstMBI GATC 3 cut(s) 511, 517, 721
BstMWI GCNNNNNNNGC 5 cut(s) 53, 128, 395, 689, 773
BstNI CCWGG 2 cut(s) 189, 291
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 187, 289
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 487
BsuRI GGCC 2 cut(s) 570, 584
BtgI CCRYGG 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 4 cut(s) 14, 561, 622, 685
BtsIMutI CAGTG 3 cut(s) 477, 724, 812
Cac8I GCNNGC 2 cut(s) 387, 400
CfoI GCGC 1 cut(s) 391
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 1 cut(s) 668
CviAII CATG 5 cut(s) 48, 95, 116, 566, 638
CviJI RGCY 9 cut(s) 34, 131, 250, 278, 570, 584, 689, 776, 798
CviKI_1 RGCY 9 cut(s) 34, 131, 250, 278, 570, 584, 689, 776, 798
CviQI GTAC 1 cut(s) 668
DdeI CTNAG 4 cut(s) 57, 505, 542, 671
DpnI GATC 3 cut(s) 513, 519, 723
DpnII GATC 3 cut(s) 511, 517, 721
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 273
EcoRI GAATTC 2 cut(s) 345, 523
EcoRII CCWGG 2 cut(s) 187, 289
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 5 cut(s) 51, 98, 119, 569, 641
FaiI YATR 9 cut(s) 49, 96, 117, 275, 371, 567, 609, 639, 765
FatI CATG 5 cut(s) 47, 94, 115, 565, 637
FbaI TGATCA 2 cut(s) 517, 721
FblI GTMKAC 1 cut(s) 756
Fnu4HI GCNGC 1 cut(s) 690
FokI GGATG 3 cut(s) 548, 629, 692
Fsp4HI GCNGC 1 cut(s) 690
GlaI GCGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 690
GsaI CCCAGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 2 cut(s) 570, 584
HapII CCGG 4 cut(s) 18, 215, 279, 485
HhaI GCGC 1 cut(s) 391
Hin1II CATG 5 cut(s) 51, 98, 119, 569, 641
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 139, 620
HpaII CCGG 4 cut(s) 18, 215, 279, 485
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 4 cut(s) 239, 499, 508, 522
Hpy188III TCNNGA 5 cut(s) 215, 313, 322, 350, 515
Hpy8I GTNNAC 1 cut(s) 757
Hpy99I CGWCG 1 cut(s) 532
HpyAV CCTTC 2 cut(s) 95, 450
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 3 cut(s) 84, 367, 418
HpyCH4V TGCA 4 cut(s) 159, 244, 683, 767
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 128, 395, 689, 773
HpyF3I CTNAG 4 cut(s) 57, 505, 542, 671
HpySE526I ACGT 3 cut(s) 84, 367, 418
Hsp92II CATG 5 cut(s) 51, 98, 119, 569, 641
HspAI GCGC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 214
Ksp22I TGATCA 2 cut(s) 517, 721
Kzo9I GATC 3 cut(s) 511, 517, 721
LmnI GCTCC 1 cut(s) 44
LweI GCATC 1 cut(s) 670
MabI ACCWGGT 1 cut(s) 187
MaeII ACGT 3 cut(s) 84, 367, 418
MaeIII GTNAC 1 cut(s) 557
MalI GATC 3 cut(s) 513, 519, 723
MboI GATC 3 cut(s) 511, 517, 721
MboII GAAGA 9 cut(s) 74, 163, 230, 233, 236, 294, 365, 464, 761
MmeI TCCRAC 1 cut(s) 613
MnlI CCTC 9 cut(s) 35, 52, 194, 239, 372, 574, 652, 670, 770
MroI TCCGGA 1 cut(s) 214
MseI TTAA 5 cut(s) 183, 195, 375, 813, 817
MslI CAYNNNNRTG 3 cut(s) 417, 642, 750
MspI CCGG 4 cut(s) 18, 215, 279, 485
MspR9I CCNGG 2 cut(s) 189, 291
MvaI CCWGG 2 cut(s) 189, 291
MwoI GCNNNNNNNGC 5 cut(s) 53, 128, 395, 689, 773
NcoI CCATGG 1 cut(s) 565
NdeII GATC 3 cut(s) 511, 517, 721
NlaIII CATG 5 cut(s) 51, 98, 119, 569, 641
NlaIV GGNNCC 1 cut(s) 649
NspI RCATGY 1 cut(s) 119
NspV TTCGAA 1 cut(s) 623
PacI TTAATTAA 1 cut(s) 817
PciI ACATGT 1 cut(s) 115
PfeI GAWTC 2 cut(s) 139, 620
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 691
PscI ACATGT 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 187, 289
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 187, 289
PspN4I GGNNCC 1 cut(s) 649
PsrI GAACNNNNNNTAC 2 cut(s) 415, 447
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 669
RsaNI GTAC 1 cut(s) 668
RseI CAYNNNNRTG 3 cut(s) 417, 642, 750
SaqAI TTAA 5 cut(s) 183, 195, 375, 813, 817
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 3 cut(s) 511, 517, 721
ScaI AGTACT 1 cut(s) 669
ScrFI CCNGG 2 cut(s) 189, 291
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 623
SmiMI CAYNNNNRTG 3 cut(s) 417, 642, 750
SsiI CCGC 1 cut(s) 690
StyD4I CCNGG 2 cut(s) 187, 289
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 3 cut(s) 87, 370, 421
TaqI TCGA 4 cut(s) 142, 295, 552, 623
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 2 cut(s) 139, 620
Tru1I TTAA 5 cut(s) 183, 195, 375, 813, 817
Tru9I TTAA 5 cut(s) 183, 195, 375, 813, 817
TscAI CASTG 3 cut(s) 477, 724, 812
TspDTI ATGAA 3 cut(s) 81, 321, 465
TspRI CASTG 3 cut(s) 477, 724, 812
Tth111I GACNNNGTC 1 cut(s) 83
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 3 cut(s) 316, 345, 523
XceI RCATGY 1 cut(s) 119
XmiI GTMKAC 1 cut(s) 756
ZrmI AGTACT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.