Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014750

Physical Location & Seq

Genomic Coordinates Reverse (-)

55071633 .. 55072541

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG400600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAATAGAGGAGCTTGGACTGCCCAAGAGGACAGTATCCTCGTAGATTATGTAAAAACTCATGGCGAAGGAAAGTGGAGCAAAGTTTTAAAGGAAAGAGGGAGACTTCCAGGGCGAACAGACTCTGAAATCAAGAATCACTGGAACACAGTCATAAGAAGGAAGATCATCAATGACAATAAGAAGCAATGCCAATCAGAAAATAAGAAACAAAACAACAAACCTTCTGACAGGGGCCCCCATTTGCTGCTGACAGACTCTGATACAGTCCATATGAATCCGGTGAAAAATAAGAAGCTTGCTAGTACTGTTCAACAGTCACAGAATGCCGGATATCTTGAAACTGATGTAAATGCAGAACCAACCCAAGATGGAAACTCAGGGAATGGTACAGTGGTAATGGAACCAAAACCTAGTAGTGATGTATCAATTTCTTCCACAGAGGGTAACCCACCAGACGACATAATGGGTAACTACTTAGAGGAGCTTTTAAGGTCCGATATTCCAGCTTTAGAATTCTGGAAATTATGCAACTTTGATAATGATACAGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

185

Amino Acids

20.75

Weight (kDa)

5.83

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 51	1.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	6 - 59	1.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32460 FvH4_5g32460
malus_domestica	MD02G1087500.v1.1 MD15G1215100.v1.1
prunus_persica	Prupe.4G204800_v2.0.a1 Prupe.4G204800_v2.0.a1
pyrus_communis	pycom02g07030 pycom15g19080
rosa_chinensis	RchiOBHm_Chr7g0229011
rosa_laevigata	RLG00000001535
rosa_roxburghii	Rroxscaffold_3G00230790 Rroxscaffold_3G00238190
rosa_rugosa	Rorug07G0254800
rosa_samantha	Rh7AG406200 Rh7CG423800 Rh7DG400600
rosa_wichuraiana	Rw7G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	515
AfaI	GTAC	2 cut(s)	307, 391
AgsI	TTSAA	2 cut(s)	314, 341
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	4 cut(s)	14, 298, 487, 509
AluI	AGCT	4 cut(s)	14, 298, 487, 509
Alw26I	GTCTC	1 cut(s)	97
AlwNI	CAGNNNCTG	2 cut(s)	125, 260
AoxI	GGCC	1 cut(s)	235
ApaI	GGGCCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	515
AspS9I	GGNCC	3 cut(s)	235, 236, 495
AsuHPI	GGTGA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	495
BaeGI	GKGCMC	1 cut(s)	239
BaeI	ACNNNNGTAYC	3 cut(s)	381, 414, 537
BanII	GRGCYC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	303, 414
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	1 cut(s)	111
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	235, 236, 495
BmiI	GGNNCC	4 cut(s)	236, 237, 238, 405
BmrFI	CCNGG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	110
BsaWI	WCCGGW	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	24, 497
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	1 cut(s)	237
BsiSI	CCGG	2 cut(s)	281, 330
BsmAI	GTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	237
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	4 cut(s)	236, 237, 238, 405
BsrDI	GCAATG	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	7 cut(s)	35, 151, 268, 310, 318, 394, 550
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	2 cut(s)	379, 478
BstEII	GGTNACC	1 cut(s)	446
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	111
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	139, 399
Cac8I	GCNNGC	1 cut(s)	300
CaiI	CAGNNNCTG	2 cut(s)	125, 260
Cfr13I	GGNCC	3 cut(s)	235, 236, 495
Csp6I	GTAC	2 cut(s)	306, 390
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	14, 237, 298, 487, 509
CviKI_1	RGCY	5 cut(s)	14, 237, 298, 487, 509
CviQI	GTAC	2 cut(s)	306, 390
DdeI	CTNAG	2 cut(s)	379, 478
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DraI	TTTAAA	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	495
Eco91I	GGTNACC	1 cut(s)	446
EcoO109I	RGGNCCY	2 cut(s)	235, 236
EcoO65I	GGTNACC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	1 cut(s)	65
FaiI	YATR	8 cut(s)	51, 63, 155, 273, 275, 464, 529, 556
FatI	CATG	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	2 cut(s)	303, 414
GluI	GCNGC	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	281, 330
Hin1II	CATG	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	122, 136, 257, 277
HpaII	CCGG	2 cut(s)	281, 330
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	5 cut(s)	127, 199, 229, 262, 499
Hpy188III	TCNNGA	3 cut(s)	133, 338, 520
HpyAV	CCTTC	3 cut(s)	62, 153, 234
HpyCH4III	ACNGT	7 cut(s)	35, 151, 268, 310, 318, 394, 550
HpyCH4V	TGCA	2 cut(s)	356, 531
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	379, 478
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	11, 78, 484
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	2 cut(s)	303, 414
MaeIII	GTNAC	3 cut(s)	318, 446, 470
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	2 cut(s)	175, 426
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	3 cut(s)	429, 515, 524
MlyI	GAGTC	2 cut(s)	116, 251
MnlI	CCTC	5 cut(s)	22, 50, 92, 436, 475
MseI	TTAA	2 cut(s)	89, 491
MspI	CCGG	2 cut(s)	281, 330
MspR9I	CCNGG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	20
NdeI	CATATG	1 cut(s)	273
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	65
NlaIV	GGNNCC	4 cut(s)	236, 237, 238, 405
NmuCI	GTSAC	1 cut(s)	318
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	136, 277
PkrI	GCNGC	1 cut(s)	249
PleI	GAGTC	2 cut(s)	116, 251
PpsI	GAGTC	2 cut(s)	116, 251
Psp6I	CCWGG	1 cut(s)	109
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	4 cut(s)	236, 237, 238, 405
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	3 cut(s)	235, 236, 495
PstNI	CAGNNNCTG	2 cut(s)	125, 260
RsaI	GTAC	2 cut(s)	307, 391
RsaNI	GTAC	2 cut(s)	306, 390
SaqAI	TTAA	2 cut(s)	89, 491
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	3 cut(s)	235, 236, 495
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	2 cut(s)	116, 251
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	7 cut(s)	16, 226, 300, 415, 489, 497, 511
SinI	GGWCC	1 cut(s)	495
Sse9I	AATT	3 cut(s)	429, 515, 524
SspMI	CTAG	2 cut(s)	303, 414
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	7 cut(s)	35, 151, 268, 310, 318, 394, 550
TasI	AATT	3 cut(s)	429, 515, 524
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	136, 277
Tru1I	TTAA	2 cut(s)	89, 491
Tru9I	TTAA	2 cut(s)	89, 491
TscAI	CASTG	2 cut(s)	146, 399
TseFI	GTSAC	1 cut(s)	318
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	318
TspDTI	ATGAA	2 cut(s)	17, 290
TspRI	CASTG	2 cut(s)	146, 399
VpaK11BI	GGWCC	1 cut(s)	495
XapI	RAATTY	1 cut(s)	515
XspI	CTAG	2 cut(s)	303, 414
ZrmI	AGTACT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.