pycom02g07030
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014750
Physical Location & Seq
Forward (+)
4885049 .. 4886890
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07030.1

Sequence Viewer

Length: 753 bp
ATGGGGAGAAAACCAGCCGGTGATACAGACGGGCTAAAAAGAGGAGCATGGTGTGCTGAGGAAGATGAAGTCCTTACTGACTACGTCAAAACACATGGAGAAGGACAATGGAGACATGTTGCTAAAAAAGCTGGGTTGAATCGGAGTGGGAAGAGTTGCAGACTGCGATGGTTGAATTATCTTAAACCTGGTGTTAAGAAAGGCAACATTTCTCCTGAAGAAGAAGACCTCATTATCAGATTGCACAAGCTTCTTGGAAACAGGTGGTCTCTAATAGCCGGAAGATTGCCCGGTCGAACGGACAATGAAATCAAGAACTTCTGGAATATCAGTTTGAGCAAGAGAATTCAAGAAGAAAGACCTCGACGCATAATTAATAACAAGCAAGCGCCTAATGCTGGCGATAATCATCATCAACGTGGTAATTATTGTTCTAATCCTTCCAAAGATGAAGATGATCAATCCAATCCAGTGAAATCCAATCCGGTGGCACTATCAGACATCTCAGATGATCGTGATCAGAATTCGTCGTTGAGTTTTCTAAGAGATTTCGACAGTTACATCCATGGCCTTTCACACGAGGCCGAAATGATCAATGGATTTGGAAATTATATGGTGGATGATTCGAACTTTGTTGGACATGGTGATGGAACGAAGTGTGAGGATTTAGTACTGAGGGAGGATGCAGAAGCTGCAAAGTGGAAAATTTTGGGTGCTACCAGTGATCGATTTATTATTTCAACCAAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009653 GO:0009698 GO:0009699 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010023 GO:0010026 GO:0010090 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0010468 GO:0010556 GO:0016043 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048316 GO:0048354 GO:0048359 GO:0048468 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0072330 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

251

Amino Acids

28.2

Weight (kDa)

7.09

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 2.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.5e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 109 4.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 117 4.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 345, 523, 705
AcuI CTGAAG 1 cut(s) 237
AfaI GTAC 1 cut(s) 672
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 4 cut(s) 139, 175, 350, 741
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 131, 250, 692
AluI AGCT 3 cut(s) 131, 250, 692
Alw26I GTCTC 2 cut(s) 106, 273
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 2 cut(s) 568, 582
ApeKI GCWGC 1 cut(s) 692
ApoI RAATTY 3 cut(s) 345, 523, 705
AseI ATTAAT 1 cut(s) 375
AspLEI GCGC 1 cut(s) 391
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 32, 656
AsuII TTCGAA 1 cut(s) 626
BauI CACGAG 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 679
BccI CCATC 2 cut(s) 162, 641
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 3 cut(s) 457, 517, 591
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 106, 273
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
BmcAI AGTACT 1 cut(s) 672
Bme1390I CCNGG 2 cut(s) 189, 291
BmrFI CCNGG 2 cut(s) 189, 291
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 291
Bsa29I ATCGAT 1 cut(s) 727
BsaBI GATNNNNATC 2 cut(s) 408, 516
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 565
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 470, 720
Bse8I GATNNNNATC 2 cut(s) 408, 516
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 727
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 3 cut(s) 561, 625, 688
BseJI GATNNNNATC 2 cut(s) 408, 516
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 3 cut(s) 48, 519, 665
BseNI ACTGG 2 cut(s) 470, 720
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 679
BseYI CCCAGC 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 2 cut(s) 570, 584
BshVI ATCGAT 1 cut(s) 727
BsiEI CGRYCG 1 cut(s) 295
BsiSI CCGG 4 cut(s) 18, 279, 291, 485
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 106, 273
BsnI GGCC 2 cut(s) 570, 584
Bso31I GGTCTC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 626
Bsp143I GATC 5 cut(s) 457, 511, 517, 591, 724
Bsp19I CCATGG 1 cut(s) 565
BspANI GGCC 2 cut(s) 570, 584
BspCNI CTCAG 3 cut(s) 49, 518, 666
BspDI ATCGAT 1 cut(s) 727
BspT104I TTCGAA 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 2 cut(s) 470, 720
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 5 cut(s) 457, 511, 517, 591, 724
BssSI CACGAG 1 cut(s) 578
BssT1I CCWWGG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 557
Bst6I CTCTTC 1 cut(s) 146
BstAPI GCANNNNNTGC 2 cut(s) 53, 692
BstBI TTCGAA 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 387, 400
BstDEI CTNAG 4 cut(s) 57, 505, 542, 674
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 3 cut(s) 561, 625, 688
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 5 cut(s) 460, 514, 520, 594, 727
BstMAI GTCTC 2 cut(s) 106, 273
BstMBI GATC 5 cut(s) 457, 511, 517, 591, 724
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 4 cut(s) 53, 128, 395, 692
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 2 cut(s) 187, 289
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 231
BstXI CCANNNNNNTGG 1 cut(s) 487
Bsu15I ATCGAT 1 cut(s) 727
BsuRI GGCC 2 cut(s) 570, 584
BsuTUI ATCGAT 1 cut(s) 727
BtgI CCRYGG 1 cut(s) 565
BtgZI GCGATG 1 cut(s) 181
BtsCI GGATG 3 cut(s) 561, 625, 688
BtsIMutI CAGTG 2 cut(s) 477, 727
Cac8I GCNNGC 2 cut(s) 387, 400
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 727
CseI GACGC 1 cut(s) 375
CsiI ACCWGGT 1 cut(s) 187
Csp6I GTAC 1 cut(s) 671
CviAII CATG 6 cut(s) 48, 95, 116, 566, 641, 750
CviJI RGCY 8 cut(s) 17, 34, 131, 250, 278, 570, 584, 692
CviKI_1 RGCY 8 cut(s) 17, 34, 131, 250, 278, 570, 584, 692
CviQI GTAC 1 cut(s) 671
DdeI CTNAG 4 cut(s) 57, 505, 542, 674
DpnI GATC 5 cut(s) 459, 513, 519, 593, 726
DpnII GATC 5 cut(s) 457, 511, 517, 591, 724
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 565
Eco31I GGTCTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 237
EcoRI GAATTC 2 cut(s) 345, 523
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 6 cut(s) 51, 98, 119, 569, 644, 753
FaiI YATR 9 cut(s) 49, 96, 117, 371, 567, 612, 614, 642, 751
FatI CATG 6 cut(s) 47, 94, 115, 565, 640, 749
FbaI TGATCA 3 cut(s) 457, 517, 591
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 3 cut(s) 548, 632, 695
Fsp4HI GCNGC 1 cut(s) 693
GlaI GCGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 693
GsaI CCCAGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 2 cut(s) 570, 584
HapII CCGG 4 cut(s) 18, 279, 291, 485
HgaI GACGC 1 cut(s) 375
HhaI GCGC 1 cut(s) 391
Hin1II CATG 6 cut(s) 51, 98, 119, 569, 644, 753
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 2 cut(s) 139, 623
HpaII CCGG 4 cut(s) 18, 279, 291, 485
HphI GGTGA 2 cut(s) 32, 656
Hpy188I TCNGA 5 cut(s) 144, 239, 499, 508, 522
Hpy188III TCNNGA 5 cut(s) 215, 313, 322, 350, 515
Hpy99I CGWCG 2 cut(s) 369, 532
HpyAV CCTTC 2 cut(s) 95, 450
HpyCH4III ACNGT 1 cut(s) 557
HpyCH4IV ACGT 2 cut(s) 84, 418
HpyCH4V TGCA 4 cut(s) 159, 244, 686, 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 53, 128, 395, 692
HpyF3I CTNAG 4 cut(s) 57, 505, 542, 674
HpySE526I ACGT 2 cut(s) 84, 418
Hsp92II CATG 6 cut(s) 51, 98, 119, 569, 644, 753
HspAI GCGC 1 cut(s) 389
Ksp22I TGATCA 3 cut(s) 457, 517, 591
Kzo9I GATC 5 cut(s) 457, 511, 517, 591, 724
LmnI GCTCC 1 cut(s) 44
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 1 cut(s) 673
MabI ACCWGGT 1 cut(s) 187
MaeII ACGT 2 cut(s) 84, 418
MaeIII GTNAC 1 cut(s) 557
MalI GATC 5 cut(s) 459, 513, 519, 593, 726
MboI GATC 5 cut(s) 457, 511, 517, 591, 724
MboII GAAGA 8 cut(s) 74, 163, 230, 233, 236, 294, 365, 464
MluCI AATT 7 cut(s) 175, 345, 372, 424, 523, 607, 705
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 8 cut(s) 35, 52, 239, 372, 574, 655, 669, 673
MseI TTAA 3 cut(s) 183, 195, 375
MslI CAYNNNNRTG 2 cut(s) 417, 645
MspI CCGG 4 cut(s) 18, 279, 291, 485
MspR9I CCNGG 2 cut(s) 189, 291
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 4 cut(s) 53, 128, 395, 692
NciI CCSGG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 565
NdeII GATC 5 cut(s) 457, 511, 517, 591, 724
NlaIII CATG 6 cut(s) 51, 98, 119, 569, 644, 753
NspI RCATGY 1 cut(s) 119
NspV TTCGAA 1 cut(s) 626
PciI ACATGT 1 cut(s) 115
PfeI GAWTC 2 cut(s) 139, 623
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 1 cut(s) 694
PscI ACATGT 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 187
PsrI GAACNNNNNNTAC 2 cut(s) 415, 447
PstNI CAGNNNCTG 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 83
RsaI GTAC 1 cut(s) 672
RsaNI GTAC 1 cut(s) 671
RseI CAYNNNNRTG 2 cut(s) 417, 645
SaqAI TTAA 3 cut(s) 183, 195, 375
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 5 cut(s) 457, 511, 517, 591, 724
ScaI AGTACT 1 cut(s) 672
ScrFI CCNGG 2 cut(s) 189, 291
SetI ASST 9 cut(s) 87, 133, 190, 231, 252, 266, 364, 421, 694
SexAI ACCWGGT 1 cut(s) 187
SfaNI GCATC 1 cut(s) 673
SfuI TTCGAA 1 cut(s) 626
SmiMI CAYNNNNRTG 2 cut(s) 417, 645
Sse9I AATT 7 cut(s) 175, 345, 372, 424, 523, 607, 705
StyD4I CCNGG 2 cut(s) 187, 289
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 557
TaiI ACGT 2 cut(s) 87, 421
TaqI TCGA 5 cut(s) 295, 364, 552, 626, 727
TasI AATT 7 cut(s) 175, 345, 372, 424, 523, 607, 705
TatI WGTACW 1 cut(s) 670
TfiI GAWTC 2 cut(s) 139, 623
Tru1I TTAA 3 cut(s) 183, 195, 375
Tru9I TTAA 3 cut(s) 183, 195, 375
TscAI CASTG 2 cut(s) 477, 727
TseI GCWGC 1 cut(s) 692
TspDTI ATGAA 3 cut(s) 81, 321, 465
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 477, 727
Tth111I GACNNNGTC 1 cut(s) 83
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 3 cut(s) 345, 523, 705
XceI RCATGY 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.