Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014750

Physical Location & Seq

Genomic Coordinates Forward (+)

17180280 .. 17181191

Gene Structure 912 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAATAGAGGAGCTTGGACTGCCGAAGAGGACAGTATCCTCGTAGATTATGTAGAAACTCATGGCGAACGAAAGTGGAGCAAAGTTTCAAAGGAAAGAGGTCTCAAGAGATGCGGGAAAAGCTGCAGGATGCGGTGGATGAACTATCTCAGACCCAATATCAAGAGGGGTAATATCTCACCCGAGGAAGAGGACCTCATCATGAGGCTCCACAAGCTCTTAGGCAACAGATGGTCTCTCATTGCAGGGAGACTTCCAGGGCGAACAGACTCTGAAATCAAGAATCACTGGAACACAGTCATAAGAAGGAAGATCATCAATGACAAGAAGCAATGCCAATCAGAAAATAAGAAACAAAACAACAAACCTTCTGACTGGGGCTCCCATTTGCTGCTGACAGACTCTGATGCAGTCCATATGAATCCGGTGAAAAATAAGAAGCTTGCTAGTACTGTTCTCCAACAGTCACAGAATGCCGGATACCTTGAAACTGATGTAAATGCAGAACCAACCCAAGATGGAAACTCAGGGAATGGTACAGTGGTAATGGAACCAAAACCTAGTAGTGATGTATCAATTTCTTCCACAGAGGGTAACCCACCAGACGACATAATGGGTAACTACTTAGAGGAGCTTTTAAGGTCCGATATTCCAGCTTTAGAATTCTGGAAATTATGCAACTTTGATAATGATACAGTCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

235

Amino Acids

26.65

Weight (kDa)

7.67

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	3 - 50	4.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	6 - 64	2.2e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	56 - 100	1.9e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	60 - 108	7.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32460 FvH4_5g32460
malus_domestica	MD02G1087500.v1.1 MD15G1215100.v1.1
prunus_persica	Prupe.4G204800_v2.0.a1 Prupe.4G204800_v2.0.a1
pyrus_communis	pycom02g07030 pycom15g19080
rosa_chinensis	RchiOBHm_Chr7g0229011
rosa_laevigata	RLG00000001535
rosa_roxburghii	Rroxscaffold_3G00230790 Rroxscaffold_3G00238190
rosa_rugosa	Rorug07G0254800
rosa_samantha	Rh7AG406200 Rh7CG423800 Rh7DG400600
rosa_wichuraiana	Rw7G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	114, 133
AcsI	RAATTY	1 cut(s)	662
AfaI	GTAC	2 cut(s)	451, 538
AgsI	TTSAA	2 cut(s)	90, 488
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	6 cut(s)	14, 123, 217, 442, 634, 656
AluI	AGCT	6 cut(s)	14, 123, 217, 442, 634, 656
Alw26I	GTCTC	3 cut(s)	107, 240, 244
AlwNI	CAGNNNCTG	2 cut(s)	272, 404
Ama87I	CYCGRG	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	123, 391
ApoI	RAATTY	1 cut(s)	662
AspS9I	GGNCC	2 cut(s)	193, 642
AsuHPI	GGTGA	2 cut(s)	171, 439
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	2 cut(s)	193, 642
BaeI	ACNNNNGTAYC	3 cut(s)	528, 561, 684
BanII	GRGCYC	1 cut(s)	383
BbvI	GCAGC	2 cut(s)	110, 378
BccI	CCATC	2 cut(s)	225, 512
BciT130I	CCWGG	1 cut(s)	258
BciVI	GTATCC	2 cut(s)	47, 473
BcoDI	GTCTC	3 cut(s)	107, 240, 244
BfaI	CTAG	2 cut(s)	447, 561
BfmI	CTRYAG	1 cut(s)	124
BfuI	GTATCC	2 cut(s)	47, 473
BisI	GCNGC	2 cut(s)	124, 392
BlsI	GCNGC	2 cut(s)	125, 393
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	193, 642
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	193, 642
BmiI	GGNNCC	3 cut(s)	209, 382, 552
BmrFI	CCNGG	1 cut(s)	258
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	3 cut(s)	101, 120, 397
BmuI	ACTGGG	1 cut(s)	385
BpuEI	CTTGAG	1 cut(s)	89
BsaI	GGTCTC	2 cut(s)	107, 240
BsaJI	CCNNGG	2 cut(s)	183, 257
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bse1I	ACTGG	2 cut(s)	293, 380
Bse3DI	GCAATG	2 cut(s)	240, 338
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	2 cut(s)	183, 257
BseGI	GGATG	2 cut(s)	135, 144
BseMI	GCAATG	2 cut(s)	240, 338
BseMII	CTCAG	2 cut(s)	163, 540
BseNI	ACTGG	2 cut(s)	293, 380
BseRI	GAGGAG	2 cut(s)	24, 644
BseXI	GCAGC	2 cut(s)	110, 378
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	425, 477
BsmAI	GTCTC	3 cut(s)	107, 240, 244
BsmI	GAATGC	1 cut(s)	478
Bso31I	GGTCTC	2 cut(s)	107, 240
BsoBI	CYCGRG	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	114, 133
BspCNI	CTCAG	2 cut(s)	162, 539
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	209, 382, 552
BspMAI	CTGCAG	1 cut(s)	128
BspTNI	GGTCTC	2 cut(s)	107, 240
BsrDI	GCAATG	2 cut(s)	240, 338
BsrI	ACTGG	2 cut(s)	293, 380
BssECI	CCNNGG	2 cut(s)	183, 257
BssMI	GATC	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	6 cut(s)	35, 298, 454, 465, 541, 697
Bst6I	CTCTTC	2 cut(s)	21, 183
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	4 cut(s)	149, 220, 526, 625
BstEII	GGTNACC	1 cut(s)	593
BstF5I	GGATG	2 cut(s)	135, 144
BstKTI	GATC	1 cut(s)	315
BstMAI	GTCTC	3 cut(s)	107, 240, 244
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 120, 214
BstNI	CCWGG	1 cut(s)	258
BstPI	GGTNACC	1 cut(s)	593
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	110, 378
BsuI	GTATCC	2 cut(s)	47, 473
BtsCI	GGATG	2 cut(s)	135, 144
BtsIMutI	CAGTG	2 cut(s)	286, 546
Cac8I	GCNNGC	1 cut(s)	444
CaiI	CAGNNNCTG	2 cut(s)	272, 404
CciI	TCATGA	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	193, 642
Csp6I	GTAC	2 cut(s)	450, 537
CviAII	CATG	2 cut(s)	62, 202
CviJI	RGCY	8 cut(s)	14, 123, 208, 217, 381, 442, 634, 656
CviKI_1	RGCY	8 cut(s)	14, 123, 208, 217, 381, 442, 634, 656
CviQI	GTAC	2 cut(s)	450, 537
DdeI	CTNAG	4 cut(s)	149, 220, 526, 625
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	21, 183
EarI	CTCTTC	2 cut(s)	21, 183
Eco24I	GRGCYC	1 cut(s)	383
Eco31I	GGTCTC	2 cut(s)	107, 240
Eco47I	GGWCC	2 cut(s)	193, 642
Eco88I	CYCGRG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	593
EcoO109I	RGGNCCY	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	593
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	383
FaeI	CATG	2 cut(s)	65, 205
FaiI	YATR	9 cut(s)	51, 63, 203, 302, 417, 419, 611, 676, 703
FatI	CATG	2 cut(s)	61, 201
FauI	CCCGC	1 cut(s)	107
FauNDI	CATATG	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	124, 392
FokI	GGATG	2 cut(s)	142, 151
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	2 cut(s)	124, 392
FspBI	CTAG	2 cut(s)	447, 561
GluI	GCNGC	2 cut(s)	124, 392
HapII	CCGG	2 cut(s)	425, 477
Hin1II	CATG	2 cut(s)	65, 205
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	4 cut(s)	269, 283, 401, 421
HpaII	CCGG	2 cut(s)	425, 477
HphI	GGTGA	2 cut(s)	171, 439
Hpy188I	TCNGA	6 cut(s)	152, 274, 343, 373, 406, 646
Hpy188III	TCNNGA	5 cut(s)	106, 163, 202, 280, 667
HpyAV	CCTTC	2 cut(s)	300, 378
HpyCH4III	ACNGT	6 cut(s)	35, 298, 454, 465, 541, 697
HpyCH4V	TGCA	5 cut(s)	126, 245, 410, 503, 678
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 120, 214
HpyF3I	CTNAG	4 cut(s)	149, 220, 526, 625
Hsp92II	CATG	2 cut(s)	65, 205
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	5 cut(s)	11, 78, 213, 386, 631
Lsp1109I	GCAGC	2 cut(s)	110, 378
LweI	GCATC	3 cut(s)	101, 120, 397
MaeI	CTAG	2 cut(s)	447, 561
MaeIII	GTNAC	3 cut(s)	465, 593, 617
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	4 cut(s)	38, 200, 322, 573
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	3 cut(s)	576, 662, 671
MlyI	GAGTC	2 cut(s)	263, 395
MmeI	TCCRAC	1 cut(s)	484
MseI	TTAA	1 cut(s)	638
MspI	CCGG	2 cut(s)	425, 477
MspR9I	CCNGG	1 cut(s)	258
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	3 cut(s)	20, 120, 214
NdeI	CATATG	1 cut(s)	417
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	2 cut(s)	65, 205
NlaIV	GGNNCC	3 cut(s)	209, 382, 552
NmuCI	GTSAC	1 cut(s)	465
PagI	TCATGA	1 cut(s)	201
PctI	GAATGC	1 cut(s)	478
PfeI	GAWTC	2 cut(s)	283, 421
PkrI	GCNGC	2 cut(s)	125, 393
PleI	GAGTC	2 cut(s)	263, 395
PpsI	GAGTC	2 cut(s)	263, 395
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	3 cut(s)	209, 382, 552
PspPI	GGNCC	2 cut(s)	193, 642
PspPPI	RGGWCCY	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	2 cut(s)	272, 404
RsaI	GTAC	2 cut(s)	451, 538
RsaNI	GTAC	2 cut(s)	450, 537
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	2 cut(s)	124, 392
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	2 cut(s)	193, 642
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	2 cut(s)	263, 395
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	383
SfaNI	GCATC	3 cut(s)	101, 120, 397
SfcI	CTRYAG	1 cut(s)	124
SinI	GGWCC	2 cut(s)	193, 642
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	576, 662, 671
SsiI	CCGC	2 cut(s)	114, 133
SspMI	CTAG	2 cut(s)	447, 561
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	6 cut(s)	35, 298, 454, 465, 541, 697
TasI	AATT	3 cut(s)	576, 662, 671
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	283, 421
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TscAI	CASTG	2 cut(s)	293, 546
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	2 cut(s)	123, 391
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	17, 155, 434
TspRI	CASTG	2 cut(s)	293, 546
VpaK11BI	GGWCC	2 cut(s)	193, 642
XapI	RAATTY	1 cut(s)	662
XspI	CTAG	2 cut(s)	447, 561
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.