Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014750

Physical Location & Seq

Genomic Coordinates Reverse (-)

23788955 .. 23791123

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0254800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAGCGTCGGCAATCTCGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGGGCCCGAGTACTATGTGGGGGTCCTCTCCTTTGTCGATAAGGAGCAGTTGGAGCCTGGGTGTGCCATTTTGATGCACTATAAGTCGGCGAGCGAAGATAAAGATGGGAAAGCTATTGTTGGGGAGGCCACCATTGAGGCAAACACGGTGTATGGTGCGTTGCGGGGGTTAGAGACTTTCAGCCAATTGTGTACTTTTGACTATGAAACTAAATCCATGCAAGTACATAAGTCACCATGGAACATACGAGACAACCCAAGGTTTGCATATCGAGGGCTTTTGCTTGGTGCAACTATAGTTCATGGAGTTCAAAACTTGTGGGTTTCACAACCCCCTCCAAATATTCAATATGCAGCTATAGTGATTGGTGGTTCGTTTATTATTGAAGGCGCTTCTCTTCTTGTTGCCATACAAGTTGTCAAGAAAGGTGCTGCTGCTGAGGGCATGAAATTAAGAGACTATATATGGTGTGGTCATGATCCTACCTCTGTTGCAGTCATGACTGAGGATGGCGCTTCTGTAGCTGGTCTTGCCATTGCTGCAGCATCATTGGTTGCTGTAAATGTCACAGGAAATGGAATTTACGATCCTATAGGTTCAATTGTAGTTGGCAACCTTCTTGGAATGGTGGCTATCTTTCTGATACAAAGGAATCGACATGCTTTAATTGGTAGGGCAATGGATGACTATGATGTAGAGAACGTTCTTCAGTTCTTGAAAAATGACCTGGTTGTAGATTCTTTCCTTTTATTTGTTTTGCACGTAGTGCATTCTTGGTTTTCCTTTTGCTGTTGGCATATTAATTTACATTTTGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900376 GO:1900377 GO:1901363 GO:1901700 GO:1902679 GO:1903085 GO:1903086 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000762 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

294

Amino Acids

32.03

Weight (kDa)

5.18

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prot_ATP_ID_OB_C	PF16450	3 - 50	2e-10	Proteasomal ATPase OB C-terminal domain
Glycohydro_20b2	PF14845	62 - 84	1.2e-06	beta-acetyl hexosaminidase like
Cation_efflux	PF01545	120 - 243	3.3e-07	Cation efflux transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014750)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32460 FvH4_5g32460
malus_domestica	MD02G1087500.v1.1 MD15G1215100.v1.1
prunus_persica	Prupe.4G204800_v2.0.a1 Prupe.4G204800_v2.0.a1
pyrus_communis	pycom02g07030 pycom15g19080
rosa_chinensis	RchiOBHm_Chr7g0229011
rosa_laevigata	RLG00000001535
rosa_roxburghii	Rroxscaffold_3G00230790 Rroxscaffold_3G00238190
rosa_rugosa	Rorug07G0254800
rosa_samantha	Rh7AG406200 Rh7CG423800 Rh7DG400600
rosa_wichuraiana	Rw7G033700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	44
AciI	CCGC	1 cut(s)	226
AclI	AACGTT	1 cut(s)	765
AclWI	GGATC	2 cut(s)	536, 644
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	755
AdeI	CACNNNGTG	1 cut(s)	829
AfaI	GTAC	3 cut(s)	74, 256, 288
AgsI	TTSAA	5 cut(s)	374, 410, 449, 663, 781
AjnI	CCWGG	2 cut(s)	118, 789
AluBI	AGCT	4 cut(s)	25, 176, 419, 587
AluI	AGCT	4 cut(s)	25, 176, 419, 587
Alw26I	GTCTC	3 cut(s)	230, 306, 513
AlwI	GGATC	2 cut(s)	536, 644
Ama87I	CYCGRG	2 cut(s)	17, 68
AoxI	GGCC	2 cut(s)	65, 189
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	5 cut(s)	416, 494, 497, 602, 605
ApoI	RAATTY	1 cut(s)	642
AseI	ATTAAT	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	455, 578
AspS9I	GGNCC	3 cut(s)	65, 66, 85
AsuHPI	GGTGA	1 cut(s)	288
AvaI	CYCGRG	2 cut(s)	17, 68
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	501
BbvI	GCAGC	5 cut(s)	428, 481, 484, 589, 617
BccI	CCATC	2 cut(s)	161, 566
BciT130I	CCWGG	2 cut(s)	120, 791
BcoDI	GTCTC	3 cut(s)	230, 306, 513
BfmI	CTRYAG	5 cut(s)	357, 420, 582, 603, 654
BfoI	RGCGCY	2 cut(s)	456, 579
BisI	GCNGC	5 cut(s)	417, 495, 498, 603, 606
BlsI	GCNGC	5 cut(s)	418, 496, 499, 604, 607
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	120, 791
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	2 cut(s)	17, 68
BmgT120I	GGNCC	3 cut(s)	65, 66, 85
BmiI	GGNNCC	4 cut(s)	66, 67, 86, 117
BmrFI	CCNGG	2 cut(s)	120, 791
BmsI	GCATC	2 cut(s)	126, 617
Bpu10I	CCTNAGC	1 cut(s)	501
BsaAI	YACGTR	1 cut(s)	826
BsaJI	CCNNGG	3 cut(s)	119, 299, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse3DI	GCAATG	2 cut(s)	597, 747
BseBI	CCWGG	2 cut(s)	120, 791
BseDI	CCNNGG	3 cut(s)	119, 299, 320
BseGI	GGATG	2 cut(s)	577, 751
BseMI	GCAATG	2 cut(s)	597, 747
BseMII	CTCAG	2 cut(s)	492, 558
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	5 cut(s)	428, 481, 484, 589, 617
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	67, 191
BsiHKCI	CYCGRG	2 cut(s)	17, 68
BsmAI	GTCTC	3 cut(s)	230, 306, 513
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	2 cut(s)	67, 191
BsoBI	CYCGRG	2 cut(s)	17, 68
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	3 cut(s)	27, 541, 649
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	67, 191
BspCNI	CTCAG	2 cut(s)	493, 559
BspFNI	CGCG	1 cut(s)	44
BspHI	TCATGA	2 cut(s)	538, 561
BspLI	GGNNCC	4 cut(s)	66, 67, 86, 117
BspMAI	CTGCAG	1 cut(s)	607
BspPI	GGATC	2 cut(s)	536, 644
BsrDI	GCAATG	2 cut(s)	597, 747
BssECI	CCNNGG	3 cut(s)	119, 299, 320
BssMI	GATC	3 cut(s)	27, 541, 649
BssT1I	CCWWGG	2 cut(s)	299, 320
Bst2UI	CCWGG	2 cut(s)	120, 791
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	465
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstBAI	YACGTR	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	501, 567
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	2 cut(s)	577, 751
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	2 cut(s)	456, 579
BstHHI	GCGC	2 cut(s)	455, 578
BstKTI	GATC	3 cut(s)	30, 544, 652
BstMAI	GTCTC	3 cut(s)	230, 306, 513
BstMBI	GATC	3 cut(s)	27, 541, 649
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 584, 593, 602, 829
BstNI	CCWGG	2 cut(s)	120, 791
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	2 cut(s)	118, 789
BstSFI	CTRYAG	5 cut(s)	357, 420, 582, 603, 654
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	5 cut(s)	428, 481, 484, 589, 617
BsuRI	GGCC	2 cut(s)	67, 191
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	2 cut(s)	577, 751
Cac8I	GCNNGC	1 cut(s)	154
CciI	TCATGA	2 cut(s)	538, 561
CfoI	GCGC	2 cut(s)	455, 578
Cfr13I	GGNCC	3 cut(s)	65, 66, 85
CsiI	ACCWGGT	1 cut(s)	789
Csp6I	GTAC	3 cut(s)	73, 255, 287
CspCI	CAANNNNNGTGG	2 cut(s)	362, 397
CviAII	CATG	7 cut(s)	280, 300, 365, 508, 539, 562, 722
CviQI	GTAC	3 cut(s)	73, 255, 287
DdeI	CTNAG	2 cut(s)	501, 567
DpnI	GATC	3 cut(s)	29, 543, 651
DpnII	GATC	3 cut(s)	27, 541, 649
DraIII	CACNNNGTG	1 cut(s)	829
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	299, 320
Eco24I	GRGCYC	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	755
Eco88I	CYCGRG	2 cut(s)	17, 68
EcoO109I	RGGNCCY	2 cut(s)	65, 85
EcoRII	CCWGG	2 cut(s)	118, 789
EcoT14I	CCWWGG	2 cut(s)	299, 320
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	299, 320
FaeI	CATG	7 cut(s)	283, 303, 368, 511, 542, 565, 725
FatI	CATG	7 cut(s)	279, 299, 364, 507, 538, 561, 721
FauI	CCCGC	1 cut(s)	219
Fnu4HI	GCNGC	5 cut(s)	417, 495, 498, 603, 606
FokI	GGATG	2 cut(s)	584, 758
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	5 cut(s)	417, 495, 498, 603, 606
GlaI	GCGC	2 cut(s)	454, 577
GluI	GCNGC	5 cut(s)	417, 495, 498, 603, 606
HaeII	RGCGCY	2 cut(s)	456, 579
HaeIII	GGCC	2 cut(s)	67, 191
HhaI	GCGC	2 cut(s)	455, 578
Hin1II	CATG	7 cut(s)	283, 303, 368, 511, 542, 565, 725
Hin6I	GCGC	2 cut(s)	453, 576
HinP1I	GCGC	2 cut(s)	453, 576
HinfI	GANTC	2 cut(s)	715, 800
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	5 cut(s)	17, 484, 539, 562, 778
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	4 cut(s)	11, 35, 58, 61
HpyAV	CCTTC	2 cut(s)	443, 689
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	2 cut(s)	765, 825
HpyCH4V	TGCA	9 cut(s)	139, 283, 329, 353, 416, 557, 605, 823, 832
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 584, 593, 602, 829
HpyF3I	CTNAG	2 cut(s)	501, 567
HpySE526I	ACGT	2 cut(s)	765, 825
Hsp92II	CATG	7 cut(s)	283, 303, 368, 511, 542, 565, 725
HspAI	GCGC	2 cut(s)	453, 576
Kzo9I	GATC	3 cut(s)	27, 541, 649
LmnI	GCTCC	3 cut(s)	22, 106, 115
LpnPI	CCDG	6 cut(s)	105, 132, 573, 618, 776, 803
Lsp1109I	GCAGC	5 cut(s)	428, 481, 484, 589, 617
LweI	GCATC	2 cut(s)	126, 617
MabI	ACCWGGT	1 cut(s)	789
MaeII	ACGT	2 cut(s)	765, 825
MaeIII	GTNAC	2 cut(s)	294, 628
MalI	GATC	3 cut(s)	29, 543, 651
MboI	GATC	3 cut(s)	27, 541, 649
MboII	GAAGA	3 cut(s)	170, 452, 761
MfeI	CAATTG	2 cut(s)	248, 663
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	6 cut(s)	248, 512, 642, 663, 729, 865
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	9 cut(s)	13, 98, 181, 193, 329, 408, 496, 559, 562
MseI	TTAA	3 cut(s)	515, 728, 864
MslI	CAYNNNNRTG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	120, 791
MunI	CAATTG	2 cut(s)	248, 663
Mva1269I	GAATGC	1 cut(s)	832
MvaI	CCWGG	2 cut(s)	120, 791
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	5 cut(s)	115, 584, 593, 602, 829
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	27, 541, 649
NlaIII	CATG	7 cut(s)	283, 303, 368, 511, 542, 565, 725
NlaIV	GGNNCC	4 cut(s)	66, 67, 86, 117
NmuCI	GTSAC	2 cut(s)	294, 628
NspI	RCATGY	1 cut(s)	725
PaeR7I	CTCGAG	1 cut(s)	17
PagI	TCATGA	2 cut(s)	538, 561
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PctI	GAATGC	1 cut(s)	832
PfeI	GAWTC	2 cut(s)	715, 800
PkrI	GCNGC	5 cut(s)	418, 496, 499, 604, 607
Ppu21I	YACGTR	1 cut(s)	826
PpuMI	RGGWCCY	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	864
Psp1406I	AACGTT	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	118, 789
PspGI	CCWGG	2 cut(s)	118, 789
PspN4I	GGNNCC	4 cut(s)	66, 67, 86, 117
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	65, 66, 85
PspPPI	RGGWCCY	1 cut(s)	85
PsrI	GAACNNNNNNTAC	2 cut(s)	750, 782
PstI	CTGCAG	1 cut(s)	607
RsaI	GTAC	3 cut(s)	74, 256, 288
RsaNI	GTAC	3 cut(s)	73, 255, 287
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	515, 728, 864
SatI	GCNGC	5 cut(s)	417, 495, 498, 603, 606
Sau3AI	GATC	3 cut(s)	27, 541, 649
Sau96I	GGNCC	3 cut(s)	65, 66, 85
ScaI	AGTACT	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	120, 791
SduI	GDGCHC	1 cut(s)	69
SexAI	ACCWGGT	1 cut(s)	789
SfaNI	GCATC	2 cut(s)	126, 617
SfcI	CTRYAG	5 cut(s)	357, 420, 582, 603, 654
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	6 cut(s)	248, 512, 642, 663, 729, 865
SsiI	CCGC	1 cut(s)	226
SspI	AATATT	1 cut(s)	406
StyD4I	CCNGG	2 cut(s)	118, 789
StyI	CCWWGG	2 cut(s)	299, 320
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	2 cut(s)	768, 828
TaqI	TCGA	5 cut(s)	18, 30, 99, 334, 718
TasI	AATT	6 cut(s)	248, 512, 642, 663, 729, 865
TatI	WGTACW	3 cut(s)	72, 254, 286
TfiI	GAWTC	2 cut(s)	715, 800
Tru1I	TTAA	3 cut(s)	515, 728, 864
Tru9I	TTAA	3 cut(s)	515, 728, 864
TseFI	GTSAC	2 cut(s)	294, 628
TseI	GCWGC	5 cut(s)	416, 494, 497, 602, 605
Tsp45I	GTSAC	2 cut(s)	294, 628
TspDTI	ATGAA	3 cut(s)	282, 353, 524
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	864
XapI	RAATTY	1 cut(s)	642
XceI	RCATGY	1 cut(s)	725
XhoI	CTCGAG	1 cut(s)	17
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.