Prupe.4G204800_v2.0.a1
MYB Family

RNA polymerase II transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014750
Physical Location & Seq
Forward (+)
12756672 .. 12757892
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G204800.1

Sequence Viewer

Length: 675 bp
ATGGGGAGAAAACTACCCGGTGATAAAGATGTGGTGAAAAGAGGAGCATGGTGTCCTAAGGAAGATAAAGTCCTTGCAGACTACATCAAAACACATGGAGAAGGAAAATGGAGCCATGTTGCTAAGAAAACTGGGTTGAACCGGAGTGGGAAAAGTTGCAGACTACGATGGTTGAATTATCTTAGGCCTGATGTTAAGAGAGGCAACTTTTCTCCCGAAGAAGAGGACCTTATTATCAGAATGCACAAGCTTCTTGGAAACAGGTGGTCCCTCATCGCTGGAAGATTACCAGGTCGGACAGACAATGAAATAAAGAACTTTTGGAATATTAATTTGAGCAAGAGAGTTCCAGAGGCAAGACCACGTCGCATCAAGATAAATGCTAAAAATGATGGCGCTGATGAAGGTGGTAATTGTACTGCTAAAGATGATCAGGTTCAGGTGATTCAAAGTATAACATTAAATTGCACAAAGGCAGCTGCCATGATCCCATCGCATCATCATCTACATGATGGTGATCAAAGGGTCAATATTCAAGAACAAAGAGTCGTTGATGACATCTCGTCTAGCAGTTTTCTAAGGGACTTGGACAATTTCATCAATGACGTTTTGCACGAGTCCGAAATCAATGGAGATCAATATTATGTGGTGGATGATCAAGAAAGGGAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

225

Amino Acids

25.7

Weight (kDa)

8.6

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 481
AfaI GTAC 1 cut(s) 418
AgsI TTSAA 4 cut(s) 139, 175, 449, 536
AhdI GACNNNNNGTC 1 cut(s) 562
AjiI CACGTC 1 cut(s) 365
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 2 cut(s) 250, 479
AluI AGCT 2 cut(s) 250, 479
AlwI GGATC 1 cut(s) 481
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 476, 479
AseI ATTAAT 1 cut(s) 330
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 226, 267
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 4 cut(s) 32, 46, 454, 527
AvaII GGWCC 2 cut(s) 226, 267
AxyI CCTNAGG 1 cut(s) 57
BauI CACGAG 1 cut(s) 614
BbvI GCAGC 2 cut(s) 466, 488
BccI CCATC 4 cut(s) 162, 386, 499, 506
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 3 cut(s) 430, 517, 655
BcnI CCSGG 1 cut(s) 18
BfaI CTAG 1 cut(s) 567
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 2 cut(s) 477, 480
BlsI GCNGC 2 cut(s) 478, 481
Bme1390I CCNGG 2 cut(s) 18, 291
Bme18I GGWCC 2 cut(s) 226, 267
BmeRI GACNNNNNGTC 1 cut(s) 562
BmgBI CACGTC 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 226, 267
BmiI GGNNCC 2 cut(s) 113, 269
BmrFI CCNGG 2 cut(s) 18, 291
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 2 cut(s) 378, 505
BmuI ACTGGG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 516
BsaWI WCCGGW 1 cut(s) 141
Bse1I ACTGG 1 cut(s) 136
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 658
BseJI GATNNNNATC 1 cut(s) 516
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 466, 488
BshFI GGCC 1 cut(s) 187
BsiSI CCGG 2 cut(s) 18, 142
BslFI GGGAC 2 cut(s) 253, 596
BsmFI GGGAC 2 cut(s) 253, 596
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 5 cut(s) 430, 486, 517, 634, 655
BspANI GGCC 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 113, 269
BspPI GGATC 1 cut(s) 481
BsrI ACTGG 1 cut(s) 136
BssMI GATC 5 cut(s) 430, 486, 517, 634, 655
BssSI CACGAG 1 cut(s) 614
Bst2BI CACGAG 1 cut(s) 614
Bst2UI CCWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 216
BstDEI CTNAG 4 cut(s) 57, 123, 182, 578
BstF5I GGATG 1 cut(s) 658
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 5 cut(s) 433, 489, 520, 637, 658
BstMBI GATC 5 cut(s) 430, 486, 517, 634, 655
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 2 cut(s) 16, 289
BstV1I GCAGC 2 cut(s) 466, 488
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 1 cut(s) 187
BtgZI GCGATG 2 cut(s) 259, 477
BtrI CACGTC 1 cut(s) 365
BtsCI GGATG 1 cut(s) 658
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 2 cut(s) 226, 267
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 417
CviAII CATG 5 cut(s) 48, 95, 116, 484, 509
CviJI RGCY 4 cut(s) 114, 187, 250, 479
CviKI_1 RGCY 4 cut(s) 114, 187, 250, 479
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 4 cut(s) 57, 123, 182, 578
DpnI GATC 5 cut(s) 432, 488, 519, 636, 657
DpnII GATC 5 cut(s) 430, 486, 517, 634, 655
DriI GACNNNNNGTC 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 216
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 226, 267
Eco81I CCTNAGG 1 cut(s) 57
EcoO109I RGGNCCY 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 5 cut(s) 51, 98, 119, 487, 512
FaiI YATR 7 cut(s) 49, 96, 117, 455, 485, 510, 645
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 2 cut(s) 253, 596
FatI CATG 5 cut(s) 47, 94, 115, 483, 508
FbaI TGATCA 3 cut(s) 430, 517, 655
Fnu4HI GCNGC 2 cut(s) 477, 480
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 2 cut(s) 477, 480
FspBI CTAG 1 cut(s) 567
GlaI GCGC 1 cut(s) 397
GluI GCNGC 2 cut(s) 477, 480
HaeII RGCGCY 1 cut(s) 399
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 18, 142
HhaI GCGC 1 cut(s) 398
Hin1II CATG 5 cut(s) 51, 98, 119, 487, 512
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 3 cut(s) 445, 546, 617
HpaII CCGG 2 cut(s) 18, 142
HphI GGTGA 4 cut(s) 32, 46, 454, 527
Hpy188I TCNGA 3 cut(s) 239, 297, 622
Hpy188III TCNNGA 5 cut(s) 215, 350, 373, 536, 659
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 2 cut(s) 95, 398
HpyCH4IV ACGT 2 cut(s) 364, 606
HpyCH4V TGCA 5 cut(s) 77, 159, 244, 468, 613
HpyF3I CTNAG 4 cut(s) 57, 123, 182, 578
HpySE526I ACGT 2 cut(s) 364, 606
Hsp92II CATG 5 cut(s) 51, 98, 119, 487, 512
HspAI GCGC 1 cut(s) 396
Ksp22I TGATCA 3 cut(s) 430, 517, 655
Kzo9I GATC 5 cut(s) 430, 486, 517, 634, 655
LmnI GCTCC 2 cut(s) 44, 111
Lsp1109I GCAGC 2 cut(s) 466, 488
LweI GCATC 2 cut(s) 378, 505
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 1 cut(s) 567
MaeII ACGT 2 cut(s) 364, 606
MalI GATC 5 cut(s) 432, 488, 519, 636, 657
MboI GATC 5 cut(s) 430, 486, 517, 634, 655
MboII GAAGA 4 cut(s) 74, 230, 233, 294
MluCI AATT 5 cut(s) 175, 331, 412, 463, 592
MlyI GAGTC 2 cut(s) 555, 626
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 5 cut(s) 35, 194, 217, 281, 346
MseI TTAA 3 cut(s) 195, 330, 461
MslI CAYNNNNRTG 2 cut(s) 507, 513
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 2 cut(s) 18, 142
MspR9I CCNGG 2 cut(s) 18, 291
Mva1269I GAATGC 1 cut(s) 246
MvaI CCWGG 1 cut(s) 291
NciI CCSGG 1 cut(s) 18
NdeII GATC 5 cut(s) 430, 486, 517, 634, 655
NlaIII CATG 5 cut(s) 51, 98, 119, 487, 512
NlaIV GGNNCC 2 cut(s) 113, 269
PceI AGGCCT 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PctI GAATGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 445
PflFI GACNNNGTC 1 cut(s) 363
PkrI GCNGC 2 cut(s) 478, 481
PleI GAGTC 2 cut(s) 554, 625
PpsI GAGTC 2 cut(s) 554, 625
PpuMI RGGWCCY 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 330
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 113, 269
PspPI GGNCC 2 cut(s) 226, 267
PspPPI RGGWCCY 1 cut(s) 226
PsyI GACNNNGTC 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
RseI CAYNNNNRTG 2 cut(s) 507, 513
SaqAI TTAA 3 cut(s) 195, 330, 461
SatI GCNGC 2 cut(s) 477, 480
Sau3AI GATC 5 cut(s) 430, 486, 517, 634, 655
Sau96I GGNCC 2 cut(s) 226, 267
SchI GAGTC 2 cut(s) 555, 626
ScrFI CCNGG 2 cut(s) 18, 291
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 2 cut(s) 378, 505
SinI GGWCC 2 cut(s) 226, 267
SmiMI CAYNNNNRTG 2 cut(s) 507, 513
Sse9I AATT 5 cut(s) 175, 331, 412, 463, 592
SseBI AGGCCT 1 cut(s) 187
SspI AATATT 3 cut(s) 328, 532, 641
SspMI CTAG 1 cut(s) 567
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 16, 289
TaiI ACGT 2 cut(s) 367, 609
TasI AATT 5 cut(s) 175, 331, 412, 463, 592
TatI WGTACW 1 cut(s) 416
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 3 cut(s) 195, 330, 461
Tru9I TTAA 3 cut(s) 195, 330, 461
TseI GCWGC 2 cut(s) 476, 479
TspDTI ATGAA 3 cut(s) 321, 417, 586
Tth111I GACNNNGTC 1 cut(s) 363
VpaK11BI GGWCC 2 cut(s) 226, 267
VspI ATTAAT 1 cut(s) 330
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.