Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Reverse (-)

23885646 .. 23888675

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGAGCCATCAGCAAGATTACAGGGGAAATGAAAATGGGGGGCAGCGCATTGATGCATCTAACTGGCTTCCCATAACTGCTAGTAGAAATGCAAAATGGTATTACTCGGCTTTTCACAATGTTACGGCTGTTGTTGGTGCAGGAATTCTAGGGTTACCATATGCAATGTCACAAACTGGCTGGTTTTCGGGATCGGTAGTCCTTGTTCTTTCTTGGCTCATCACATTCTACTCGTTCTGGCAACTAGTAGAAATGCATGAGATGGTGCCAGGAAAGCGATTTGATCGTTACCCAGAATTAGGGCAGCATTGTTTTGGACCCAAGTTAGGGTACTGGGTAGTGATGCCACAACAGTTGGCTGTGCAAGTCGCTACAGGCATTGTGTATGGCGTCACTGGTGGCAAATCACTCAAGAAATGCTTTGAACTCATTTGGCCGGCTTGGGGTGATTACAGAACAACATACTTCATCCTCTTTTTCGTGTGTTTGCAATTTGTCATCTCCCAAGCTCCAAACTTCAATTCTTTGAAAGGTGTTTCTCTCCTGGCTGCAATCATGTCCATCGGTTATGCCGCAATAGCATTTTTCGCATCAACAATCCAGGGAGTGCATCATCGTGAGGGTGTGAGCTACGGGGTTCGATCTCCGACAGTTTCTGGTCAAGTCTTTGATTTCTTGAATGGGTGTGGAACAATAGCTTTTGCTTTTGCAGGACACAGTGTATCCCTAGAAATTCAAGCTACCATTCCTTCAACTCCAGAGAAACCCTCAAAATATGCTATGTGGAAAGGTGTTGTTGTAGCTTATGTCGTCGTAGCGGTTTGCTATGGCACTGTTTCAGTCGCCGGCTACTGGGCGTATGGCAAACATGTAGAAGATGATGTTCTCATCTCACTTATGAGGCCTGCATGGCTCATTGCATTGGCTAACTTCATGGTGTTTGTTCATGTTATTGGAAGTTATCAGGTCTTTACCATGCCTGTATTTGATCAGATTGAGCAATATCTTGTAGAAGAACGGGGTCTCGCCCCCGGACGACCTTTGCGCATCATTTGCCGTAGTATATATGTCGCTGCAATAGGGTTTGTTTCGATAAGCGTTCCATTTTTCGGAGGCTTGTTAGGATTATTTGGAGGATTGTTTTTCGCCTCCACATCTTATTTTATGCCTTGTATTATGTGGCTTGTCACCCACAAGCCAAAAAAAATGAGCTTCCACTGGACTGCATCATGGATAAGCATTGTTCTTGGCTTTCTGCTGGCATTTCTATCACCAATAGGAGGGGCATATACAATTATTGTGGCATTCAAAACTTACAGCTTCTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

444

Amino Acids

49.13

Weight (kDa)

9.0

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	30 - 427	5e-87	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	42 - 188	2.1e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1046
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	2 cut(s)	573, 818
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	144, 732
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	7 cut(s)	299, 326, 327, 443, 852, 1109, 1280
AflIII	ACRYGT	1 cut(s)	868
AgsI	TTSAA	7 cut(s)	425, 520, 529, 679, 737, 753, 1309
AhlI	ACTAGT	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	268, 543, 600
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AluBI	AGCT	7 cut(s)	509, 630, 698, 740, 803, 1212, 1320
AluI	AGCT	7 cut(s)	509, 630, 698, 740, 803, 1212, 1320
Alw26I	GTCTC	1 cut(s)	1028
AlwI	GGATC	1 cut(s)	199
AlwNI	CAGNNNCTG	1 cut(s)	656
AoxI	GGCC	2 cut(s)	434, 902
ApeKI	GCWGC	4 cut(s)	43, 304, 548, 1073
ApoI	RAATTY	2 cut(s)	144, 732
AspLEI	GCGC	2 cut(s)	48, 1047
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	1032
AsuHPI	GGTGA	3 cut(s)	458, 1180, 1263
AvaII	GGWCC	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	265
BbvI	GCAGC	4 cut(s)	55, 316, 535, 1060
BccI	CCATC	3 cut(s)	15, 256, 569
BceAI	ACGGC	2 cut(s)	141, 1041
BciT130I	CCWGG	3 cut(s)	270, 545, 602
BciVI	GTATCC	1 cut(s)	733
BclI	TGATCA	1 cut(s)	988
BcnI	CCSGG	1 cut(s)	1032
BcoDI	GTCTC	1 cut(s)	1028
BcuI	ACTAGT	1 cut(s)	244
BfaI	CTAG	4 cut(s)	81, 149, 245, 728
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	733
BglI	GCCNNNNNGGC	1 cut(s)	910
BisI	GCNGC	5 cut(s)	44, 305, 549, 573, 1074
BlsI	GCNGC	5 cut(s)	45, 306, 550, 574, 1075
Bme1390I	CCNGG	4 cut(s)	270, 545, 602, 1032
Bme18I	GGWCC	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	317
BmiI	GGNNCC	2 cut(s)	267, 319
BmrFI	CCNGG	4 cut(s)	270, 545, 602, 1032
BmrI	ACTGGG	2 cut(s)	343, 862
BmsI	GCATC	7 cut(s)	43, 65, 333, 599, 619, 1056, 1235
BmuI	ACTGGG	2 cut(s)	343, 862
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpmI	CTGGAG	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	395
BpuMI	CCSGG	1 cut(s)	1032
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	1028
BsaJI	CCNNGG	2 cut(s)	601, 1030
Bsc4I	CCNNNNNNNGG	7 cut(s)	299, 326, 327, 443, 852, 1109, 1280
Bse118I	RCCGGY	2 cut(s)	436, 845
Bse1I	ACTGG	6 cut(s)	68, 181, 338, 400, 857, 1223
Bse3DI	GCAATG	2 cut(s)	171, 915
BseBI	CCWGG	3 cut(s)	270, 545, 602
BseDI	CCNNGG	2 cut(s)	601, 1030
BseGI	GGATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	7 cut(s)	299, 326, 327, 443, 852, 1109, 1280
BseMI	GCAATG	2 cut(s)	171, 915
BseNI	ACTGG	6 cut(s)	68, 181, 338, 400, 857, 1223
BseXI	GCAGC	4 cut(s)	55, 316, 535, 1060
BsgI	GTGCAG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	436, 904
BshNI	GGYRCC	1 cut(s)	265
BsiSI	CCGG	3 cut(s)	437, 846, 1032
BslI	CCNNNNNNNGG	7 cut(s)	299, 326, 327, 443, 852, 1109, 1280
BsmAI	GTCTC	1 cut(s)	1028
BsmI	GAATGC	1 cut(s)	1304
BsnI	GGCC	2 cut(s)	436, 904
Bso31I	GGTCTC	1 cut(s)	1028
Bsp143I	GATC	4 cut(s)	191, 283, 641, 988
BspACI	CCGC	2 cut(s)	573, 818
BspANI	GGCC	2 cut(s)	436, 904
BspLI	GGNNCC	2 cut(s)	267, 319
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	1028
BsrDI	GCAATG	2 cut(s)	171, 915
BsrFI	RCCGGY	2 cut(s)	436, 845
BsrI	ACTGG	6 cut(s)	68, 181, 338, 400, 857, 1223
BssAI	RCCGGY	2 cut(s)	436, 845
BssECI	CCNNGG	2 cut(s)	601, 1030
BssMI	GATC	4 cut(s)	191, 283, 641, 988
BssNI	GRCGYC	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	270, 545, 602
Bst4CI	ACNGT	4 cut(s)	354, 652, 719, 835
BstACI	GRCGYC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	1053
BstC8I	GCNNGC	4 cut(s)	438, 847, 906, 1260
BstDEI	CTNAG	1 cut(s)	1329
BstEII	GGTNACC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	468
BstHHI	GCGC	2 cut(s)	48, 1047
BstKTI	GATC	4 cut(s)	194, 286, 644, 991
BstMAI	GTCTC	1 cut(s)	1028
BstMBI	GATC	4 cut(s)	191, 283, 641, 988
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 578, 587, 910, 1053
BstNI	CCWGG	3 cut(s)	270, 545, 602
BstNSI	RCATGY	1 cut(s)	872
BstPI	GGTNACC	1 cut(s)	153
BstSCI	CCNGG	4 cut(s)	268, 543, 600, 1030
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	4 cut(s)	55, 316, 535, 1060
BsuI	GTATCC	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	436, 904
BtsCI	GGATG	1 cut(s)	468
BtsIMutI	CAGTG	4 cut(s)	393, 724, 831, 1216
Cac8I	GCNNGC	4 cut(s)	438, 847, 906, 1260
CaiI	CAGNNNCTG	1 cut(s)	656
CfoI	GCGC	2 cut(s)	48, 1047
Cfr10I	RCCGGY	2 cut(s)	436, 845
Cfr13I	GGNCC	1 cut(s)	317
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	331
CspCI	CAANNNNNGTGG	4 cut(s)	336, 371, 1281, 1316
CviAII	CATG	8 cut(s)	257, 556, 869, 909, 934, 947, 976, 1230
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	1329
DpnI	GATC	4 cut(s)	193, 285, 643, 990
DpnII	GATC	4 cut(s)	191, 283, 641, 988
EaeI	YGGCCR	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	904
Eco31I	GGTCTC	1 cut(s)	1028
Eco47I	GGWCC	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	153
EcoO65I	GGTNACC	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	268, 543, 600
EcoT22I	ATGCAT	2 cut(s)	58, 258
FaeI	CATG	8 cut(s)	260, 559, 872, 912, 937, 950, 979, 1233
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	8 cut(s)	256, 555, 868, 908, 933, 946, 975, 1229
FauNDI	CATATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	988
Fnu4HI	GCNGC	5 cut(s)	44, 305, 549, 573, 1074
FokI	GGATG	1 cut(s)	455
Fsp4HI	GCNGC	5 cut(s)	44, 305, 549, 573, 1074
FspBI	CTAG	4 cut(s)	81, 149, 245, 728
FspI	TGCGCA	1 cut(s)	1046
GlaI	GCGC	2 cut(s)	47, 1046
GluI	GCNGC	5 cut(s)	44, 305, 549, 573, 1074
GsuI	CTGGAG	1 cut(s)	741
HaeIII	GGCC	2 cut(s)	436, 904
HapII	CCGG	3 cut(s)	437, 846, 1032
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	48, 1047
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	8 cut(s)	260, 559, 872, 912, 937, 950, 979, 1233
Hin6I	GCGC	2 cut(s)	46, 1045
HinP1I	GCGC	2 cut(s)	46, 1045
HpaII	CCGG	3 cut(s)	437, 846, 1032
HphI	GGTGA	3 cut(s)	458, 1180, 1263
Hpy188I	TCNGA	3 cut(s)	648, 993, 1112
Hpy188III	TCNNGA	5 cut(s)	189, 412, 617, 676, 758
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	1 cut(s)	759
HpyCH4III	ACNGT	4 cut(s)	354, 652, 719, 835
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 578, 587, 910, 1053
HpyF3I	CTNAG	1 cut(s)	1329
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	8 cut(s)	260, 559, 872, 912, 937, 950, 979, 1233
HspAI	GCGC	2 cut(s)	46, 1045
KroI	GCCGGC	2 cut(s)	436, 845
KroNI	GCCGGC	2 cut(s)	438, 847
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	4 cut(s)	191, 283, 641, 988
LmnI	GCTCC	1 cut(s)	514
Lsp1109I	GCAGC	4 cut(s)	55, 316, 535, 1060
LweI	GCATC	7 cut(s)	43, 65, 333, 599, 619, 1056, 1235
MaeI	CTAG	4 cut(s)	81, 149, 245, 728
MaeIII	GTNAC	6 cut(s)	121, 153, 168, 287, 391, 1186
MalI	GATC	4 cut(s)	193, 285, 643, 990
MboI	GATC	4 cut(s)	191, 283, 641, 988
MboII	GAAGA	2 cut(s)	887, 1025
MluCI	AATT	6 cut(s)	144, 296, 491, 520, 732, 1293
MmeI	TCCRAC	1 cut(s)	671
MnlI	CCTC	8 cut(s)	482, 613, 778, 894, 1106, 1127, 1159, 1274
Mph1103I	ATGCAT	2 cut(s)	58, 258
MroNI	GCCGGC	2 cut(s)	436, 845
MslI	CAYNNNNRTG	1 cut(s)	615
MspI	CCGG	3 cut(s)	437, 846, 1032
MspR9I	CCNGG	4 cut(s)	270, 545, 602, 1032
Mva1269I	GAATGC	1 cut(s)	1304
MvaI	CCWGG	3 cut(s)	270, 545, 602
MwoI	GCNNNNNNNGC	5 cut(s)	274, 578, 587, 910, 1053
NaeI	GCCGGC	2 cut(s)	438, 847
NciI	CCSGG	1 cut(s)	1032
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	4 cut(s)	191, 283, 641, 988
NgoMIV	GCCGGC	2 cut(s)	436, 845
NlaIII	CATG	8 cut(s)	260, 559, 872, 912, 937, 950, 979, 1233
NlaIV	GGNNCC	2 cut(s)	267, 319
NmeAIII	GCCGAG	1 cut(s)	86
NmuCI	GTSAC	3 cut(s)	168, 391, 1186
NsbI	TGCGCA	1 cut(s)	1046
NsiI	ATGCAT	2 cut(s)	58, 258
NspI	RCATGY	1 cut(s)	872
PceI	AGGCCT	1 cut(s)	904
PciI	ACATGT	1 cut(s)	868
PctI	GAATGC	1 cut(s)	1304
PdiI	GCCGGC	2 cut(s)	438, 847
PkrI	GCNGC	5 cut(s)	45, 306, 550, 574, 1075
PscI	ACATGT	1 cut(s)	868
Psp6I	CCWGG	3 cut(s)	268, 543, 600
PspEI	GGTNACC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	268, 543, 600
PspN4I	GGNNCC	2 cut(s)	267, 319
PspPI	GGNCC	1 cut(s)	317
PsrI	GAACNNNNNNTAC	2 cut(s)	189, 221
PstNI	CAGNNNCTG	1 cut(s)	656
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	615
SatI	GCNGC	5 cut(s)	44, 305, 549, 573, 1074
Sau3AI	GATC	4 cut(s)	191, 283, 641, 988
Sau96I	GGNCC	1 cut(s)	317
ScrFI	CCNGG	4 cut(s)	270, 545, 602, 1032
SfaNI	GCATC	7 cut(s)	43, 65, 333, 599, 619, 1056, 1235
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SpeI	ACTAGT	1 cut(s)	244
Sse9I	AATT	6 cut(s)	144, 296, 491, 520, 732, 1293
SseBI	AGGCCT	1 cut(s)	904
SsiI	CCGC	2 cut(s)	573, 818
SspMI	CTAG	4 cut(s)	81, 149, 245, 728
StuI	AGGCCT	1 cut(s)	904
StyD4I	CCNGG	4 cut(s)	268, 543, 600, 1030
TaaI	ACNGT	4 cut(s)	354, 652, 719, 835
TaqI	TCGA	2 cut(s)	640, 1091
TasI	AATT	6 cut(s)	144, 296, 491, 520, 732, 1293
TauI	GCSGC	1 cut(s)	575
TscAI	CASTG	4 cut(s)	400, 724, 838, 1223
TseFI	GTSAC	3 cut(s)	168, 391, 1186
TseI	GCWGC	4 cut(s)	43, 304, 548, 1073
Tsp45I	GTSAC	3 cut(s)	168, 391, 1186
TspDTI	ATGAA	4 cut(s)	45, 457, 922, 935
TspRI	CASTG	4 cut(s)	400, 724, 838, 1223
VpaK11BI	GGWCC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	144, 732
XceI	RCATGY	1 cut(s)	872
XspI	CTAG	4 cut(s)	81, 149, 245, 728
Zsp2I	ATGCAT	2 cut(s)	58, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.