MD08G1215100.v1.1

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
27813394 .. 27815944
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1215100.v1.1.491

Sequence Viewer

Length: 1383 bp
ATGAACCTACTTTATATTTCTATGTATGCAATTAAAATCCAGGAAAACACTACGAATGCAAATGAAGCAAGGGCTGAAACTAGAAGTGCCCAAGAGCAATTCGACATAAATAACTGGCTGCCCATCACAGCTAACAGGAATGCAAAATGGTGGTACTCAGCTTTCCACAATGTCACGGCTGTTGTTGGTGCAGGAATACTGGGCTTACCATATGCATTATCAGGACTTGGCTGGGGCCCTGGAATTGCAGCCATAATCTTGTCCTGGGTGATCACTTTCTACTCATTCTGGCAACTGATAAGACTGCATGAAATAGTGCCCGGACAGCGTTTTGATCGATACCCAGAACTAGGGCAGCACTGTTTTGGGCCAAAACTAGGGTACTGGATTATTATGCCGCAGCAGGTGACTGTGCAAGTGGCTTCATCCATTGTGTATACAGTTACTGGTGGCAAGTCATTGAAAAAATTCTTCGAACTCGTTATTCCAAGCATAGGTGGTTTTAGACAAACATATTTCATCCTCTTCTTCACTACTTTGCAATTAGGGATCTCCCAATCTCCCAATTTCAATTCTTTGAAAGCAATTTCTCTCCTCGCTGCATTCATGTCCTTTGGTTATGCAATGATAGCGTTTGTGACATCGACAATCACGGGTGTGCGTCACCACGAGCATGTTGATCATTCATTTCGATCTCATTCGACACCAAGCAGAGTATTTGATATGTTGAGTGGATTTGGAACAATAGCATTTGCTTTTGCAGGACACAGCGTGGCTTTAGAGATTCAAGCCACAATCCCTTCAACTCCAGAGAAACCCTCAAGAATTGCCATGTGGAGAGGTGTCGTCGTCGCTTACAGCATCGTAATATTTTGCTATCTTGCAGTTGCAATCTCTGGCTTTTGGGCTTTTGGCAATACTGTAGACGATGATGTTCTCCTCTCACTAGAAAAACCTGCTTGGGTCATCGCAGTTGCAAACCTTATGGTGTTTTTCCATGTTATAGGAAGCTATCAGGTATTTTCAATGCCTGTGTTTGATGTGATCGAGTCGTATTTAGTAAATAATTTAACATTCAAACCAGGACGACAATTGCGCCTCTTTGCTCGCAGTGCGTACGTACTCGCAGCAGGATTCATTGCAGTGTGCATTCCATTTTTTGGAGGATTGTTAGGATTATTTGGAGGCTTAGTATTCTCCTCGACATCATATTACATGCCTTGCGTTATGTGGATTGTCACACAAAAACCAAAAAGATTTAGTTTACATTGGTGGGCGTCGTGGTTTTCGATCGTTGTAGGCGTCCTGCTGGCAATTTTTTCACCCATAGGAGGAGCACGTGAGATTATTGTACAAGCCAAAAGTTACAAAATGTTTTCTTAG

Protein Analysis

461

Amino Acids

51.3

Weight (kDa)

9.38

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 47 - 444 2.3e-91 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 53 - 291 5.7e-06 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 394
Acc36I ACCTGC 2 cut(s) 394, 964
AccB7I CCANNNNNTGG 1 cut(s) 1160
AccI GTMKAC 2 cut(s) 437, 924
AciI CCGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 557
AcsI RAATTY 1 cut(s) 467
AcvI CACGTG 1 cut(s) 1340
AcyI GRCGYC 2 cut(s) 1277, 1302
AdeI CACNNNGTG 1 cut(s) 772
AfaI GTAC 5 cut(s) 155, 383, 1118, 1122, 1353
AfiI CCNNNNNNNGG 5 cut(s) 350, 377, 494, 1160, 1331
AgsI TTSAA 7 cut(s) 463, 571, 580, 788, 804, 1026, 1078
AjnI CCWGG 4 cut(s) 39, 238, 263, 1081
AleI CACNNNNGTG 1 cut(s) 656
AluBI AGCT 3 cut(s) 131, 161, 1011
AluI AGCT 3 cut(s) 131, 161, 1011
Alw21I GWGCWC 1 cut(s) 1339
AlwI GGATC 1 cut(s) 557
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 2 cut(s) 235, 368
ApaI GGGCCC 1 cut(s) 239
ApeKI GCWGC 6 cut(s) 118, 248, 355, 400, 599, 1127
ApoI RAATTY 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 3 cut(s) 235, 236, 368
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 4 cut(s) 280, 418, 656, 1314
AsuII TTCGAA 1 cut(s) 474
BaeGI GKGCMC 3 cut(s) 91, 239, 321
BanII GRGCYC 1 cut(s) 239
BauI CACGAG 1 cut(s) 668
BbrPI CACGTG 1 cut(s) 1340
Bbv12I GWGCWC 1 cut(s) 1339
BbvI GCAGC 6 cut(s) 105, 260, 367, 412, 586, 1139
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 4 cut(s) 41, 240, 265, 1083
BclI TGATCA 2 cut(s) 270, 679
BcnI CCSGG 1 cut(s) 321
BfaI CTAG 4 cut(s) 81, 350, 377, 947
BfmI CTRYAG 1 cut(s) 921
BfuAI ACCTGC 2 cut(s) 394, 964
BisI GCNGC 7 cut(s) 119, 249, 356, 398, 401, 600, 1128
BlsI GCNGC 7 cut(s) 120, 250, 357, 399, 402, 601, 1129
Bme1390I CCNGG 5 cut(s) 41, 240, 265, 321, 1083
BmgT120I GGNCC 3 cut(s) 235, 236, 368
BmiI GGNNCC 2 cut(s) 236, 237
BmrFI CCNGG 5 cut(s) 41, 240, 265, 321, 1083
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 870
BmuI ACTGGG 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 803, 835
BpmI CTGGAG 1 cut(s) 792
Bpu14I TTCGAA 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 805
BpuMI CCSGG 1 cut(s) 321
Bsa29I ATCGAT 1 cut(s) 337
BsaAI YACGTR 2 cut(s) 1120, 1340
BsaHI GRCGYC 2 cut(s) 1277, 1302
BsaJI CCNNGG 2 cut(s) 238, 264
BsaXI ACNNNNNCTCC 2 cut(s) 1176, 1206
Bsc4I CCNNNNNNNGG 5 cut(s) 350, 377, 494, 1160, 1331
Bse1I ACTGG 4 cut(s) 119, 204, 389, 451
Bse3DI GCAATG 2 cut(s) 630, 1137
BseBI CCWGG 4 cut(s) 41, 240, 265, 1083
BseCI ATCGAT 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 238, 264
BseGI GGATG 2 cut(s) 425, 519
BseLI CCNNNNNNNGG 5 cut(s) 350, 377, 494, 1160, 1331
BseMI GCAATG 2 cut(s) 630, 1137
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 4 cut(s) 119, 204, 389, 451
BseRI GAGGAG 4 cut(s) 584, 929, 1189, 1347
BseSI GKGCMC 3 cut(s) 91, 239, 321
BseXI GCAGC 6 cut(s) 105, 260, 367, 412, 586, 1139
BseYI CCCAGC 1 cut(s) 231
BsgI GTGCAG 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 1293
BshFI GGCC 2 cut(s) 237, 370
BshVI ATCGAT 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 1293
BsiHKAI GWGCWC 1 cut(s) 1339
BsiSI CCGG 1 cut(s) 321
BsiWI CGTACG 1 cut(s) 1116
BslI CCNNNNNNNGG 5 cut(s) 350, 377, 494, 1160, 1331
BsmI GAATGC 4 cut(s) 61, 145, 602, 1149
BsnI GGCC 2 cut(s) 237, 370
Bsp119I TTCGAA 1 cut(s) 474
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 4 cut(s) 91, 239, 321, 1339
Bsp1407I TGTACA 1 cut(s) 1351
Bsp143I GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
BspACI CCGC 1 cut(s) 398
BspANI GGCC 2 cut(s) 237, 370
BspCNI CTCAG 1 cut(s) 170
BspDI ATCGAT 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 236, 237
BspMI ACCTGC 2 cut(s) 394, 964
BspPI GGATC 1 cut(s) 557
BspT104I TTCGAA 1 cut(s) 474
BsrDI GCAATG 2 cut(s) 630, 1137
BsrGI TGTACA 1 cut(s) 1351
BsrI ACTGG 4 cut(s) 119, 204, 389, 451
BssECI CCNNGG 2 cut(s) 238, 264
BssMI GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
BssNAI GTATAC 1 cut(s) 438
BssNI GRCGYC 2 cut(s) 1277, 1302
BssSI CACGAG 1 cut(s) 668
Bst1107I GTATAC 1 cut(s) 438
Bst2BI CACGAG 1 cut(s) 668
Bst2UI CCWGG 4 cut(s) 41, 240, 265, 1083
Bst4CI ACNGT 4 cut(s) 362, 412, 442, 922
Bst6I CTCTTC 1 cut(s) 530
BstACI GRCGYC 2 cut(s) 1277, 1302
BstAUI TGTACA 1 cut(s) 1351
BstBAI YACGTR 2 cut(s) 1120, 1340
BstBI TTCGAA 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 1108, 1311
BstDEI CTNAG 3 cut(s) 157, 1189, 1380
BstF5I GGATG 2 cut(s) 425, 519
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 7 cut(s) 273, 337, 552, 682, 695, 1047, 1293
BstMBI GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
BstMCI CGRYCG 1 cut(s) 1293
BstMWI GCNNNNNNNGC 4 cut(s) 65, 325, 629, 1112
BstNI CCWGG 4 cut(s) 41, 240, 265, 1083
BstNSI RCATGY 2 cut(s) 677, 1219
BstSCI CCNGG 5 cut(s) 39, 238, 263, 319, 1081
BstSFI CTRYAG 1 cut(s) 921
BstSLI GKGCMC 3 cut(s) 91, 239, 321
BstSNI TACGTA 1 cut(s) 1120
BstV1I GCAGC 6 cut(s) 105, 260, 367, 412, 586, 1139
BstX2I RGATCY 1 cut(s) 549
BstYI RGATCY 1 cut(s) 549
BstZ17I GTATAC 1 cut(s) 438
Bsu15I ATCGAT 1 cut(s) 337
BsuRI GGCC 2 cut(s) 237, 370
BsuTUI ATCGAT 1 cut(s) 337
BtgZI GCGATG 1 cut(s) 952
BtsCI GGATG 2 cut(s) 425, 519
BtsI GCAGTG 2 cut(s) 1117, 1149
BtsIMutI CAGTG 3 cut(s) 358, 1117, 1149
BveI ACCTGC 2 cut(s) 394, 964
Cac8I GCNNGC 2 cut(s) 1108, 1311
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 3 cut(s) 235, 236, 368
ClaI ATCGAT 1 cut(s) 337
CseI GACGC 3 cut(s) 650, 1266, 1291
Csp6I GTAC 5 cut(s) 154, 382, 1117, 1121, 1352
CviAII CATG 6 cut(s) 308, 607, 674, 832, 998, 1216
CviQI GTAC 5 cut(s) 154, 382, 1117, 1121, 1352
DdeI CTNAG 3 cut(s) 157, 1189, 1380
DpnI GATC 7 cut(s) 272, 336, 551, 681, 694, 1046, 1292
DpnII GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
DraIII CACNNNGTG 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
Eco105I TACGTA 1 cut(s) 1120
Eco24I GRGCYC 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 1340
EcoO109I RGGNCCY 2 cut(s) 235, 236
EcoRII CCWGG 4 cut(s) 39, 238, 263, 1081
EcoT22I ATGCAT 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 239
FaeI CATG 6 cut(s) 311, 610, 677, 835, 1001, 1219
FatI CATG 6 cut(s) 307, 606, 673, 831, 997, 1215
FauNDI CATATG 1 cut(s) 211
FbaI TGATCA 2 cut(s) 270, 679
FblI GTMKAC 2 cut(s) 437, 924
Fnu4HI GCNGC 7 cut(s) 119, 249, 356, 398, 401, 600, 1128
FokI GGATG 2 cut(s) 412, 506
FriOI GRGCYC 1 cut(s) 239
Fsp4HI GCNGC 7 cut(s) 119, 249, 356, 398, 401, 600, 1128
FspBI CTAG 4 cut(s) 81, 350, 377, 947
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 7 cut(s) 119, 249, 356, 398, 401, 600, 1128
GsaI CCCAGC 1 cut(s) 235
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 2 cut(s) 237, 370
HapII CCGG 1 cut(s) 321
HgaI GACGC 3 cut(s) 650, 1266, 1291
HhaI GCGC 1 cut(s) 1098
Hin1I GRCGYC 2 cut(s) 1277, 1302
Hin1II CATG 6 cut(s) 311, 610, 677, 835, 1001, 1219
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HinfI GANTC 3 cut(s) 784, 1049, 1134
HpaII CCGG 1 cut(s) 321
HphI GGTGA 4 cut(s) 280, 418, 656, 1314
Hpy166II GTNNAC 3 cut(s) 438, 925, 1265
Hpy188III TCNNGA 3 cut(s) 222, 809, 822
Hpy8I GTNNAC 3 cut(s) 438, 925, 1265
Hpy99I CGWCG 3 cut(s) 851, 854, 1282
HpyAV CCTTC 1 cut(s) 810
HpyCH4III ACNGT 4 cut(s) 362, 412, 442, 922
HpyCH4IV ACGT 2 cut(s) 1119, 1339
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 325, 629, 1112
HpyF3I CTNAG 3 cut(s) 157, 1189, 1380
HpySE526I ACGT 2 cut(s) 1119, 1339
Hsp92I GRCGYC 2 cut(s) 1277, 1302
Hsp92II CATG 6 cut(s) 311, 610, 677, 835, 1001, 1219
HspAI GCGC 1 cut(s) 1096
Ksp22I TGATCA 2 cut(s) 270, 679
Kzo9I GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
LmnI GCTCC 1 cut(s) 1334
Lsp1109I GCAGC 6 cut(s) 105, 260, 367, 412, 586, 1139
LweI GCATC 1 cut(s) 870
MaeI CTAG 4 cut(s) 81, 350, 377, 947
MaeII ACGT 2 cut(s) 1119, 1339
MaeIII GTNAC 7 cut(s) 172, 406, 442, 637, 662, 1237, 1364
MalI GATC 7 cut(s) 272, 336, 551, 681, 694, 1046, 1292
MboI GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
MboII GAAGA 3 cut(s) 463, 517, 520
MfeI CAATTG 1 cut(s) 1091
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 4 cut(s) 91, 239, 321, 1339
MlyI GAGTC 1 cut(s) 1058
Mph1103I ATGCAT 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 467
MseI TTAA 2 cut(s) 33, 1070
MslI CAYNNNNRTG 3 cut(s) 656, 672, 1142
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 5 cut(s) 41, 240, 265, 321, 1083
MunI CAATTG 1 cut(s) 1091
Mva1269I GAATGC 4 cut(s) 61, 145, 602, 1149
MvaI CCWGG 4 cut(s) 41, 240, 265, 1083
MwoI GCNNNNNNNGC 4 cut(s) 65, 325, 629, 1112
NciI CCSGG 1 cut(s) 321
NdeI CATATG 1 cut(s) 211
NdeII GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
NlaIII CATG 6 cut(s) 311, 610, 677, 835, 1001, 1219
NlaIV GGNNCC 2 cut(s) 236, 237
NmuCI GTSAC 5 cut(s) 172, 406, 637, 662, 1237
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 2 cut(s) 677, 1219
NspV TTCGAA 1 cut(s) 474
OliI CACNNNNGTG 1 cut(s) 656
PaqCI CACCTGC 1 cut(s) 394
PcsI WCGNNNNNNNCGW 2 cut(s) 1286, 1299
PctI GAATGC 4 cut(s) 61, 145, 602, 1149
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 2 cut(s) 784, 1134
Pfl23II CGTACG 1 cut(s) 1116
PflMI CCANNNNNTGG 1 cut(s) 1160
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 7 cut(s) 120, 250, 357, 399, 402, 601, 1129
Ple19I CGATCG 1 cut(s) 1293
PleI GAGTC 1 cut(s) 1057
PmaCI CACGTG 1 cut(s) 1340
PmlI CACGTG 1 cut(s) 1340
PpsI GAGTC 1 cut(s) 1057
Ppu21I YACGTR 2 cut(s) 1120, 1340
Psp6I CCWGG 4 cut(s) 39, 238, 263, 1081
PspCI CACGTG 1 cut(s) 1340
PspFI CCCAGC 1 cut(s) 231
PspGI CCWGG 4 cut(s) 39, 238, 263, 1081
PspLI CGTACG 1 cut(s) 1116
PspN4I GGNNCC 2 cut(s) 236, 237
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 3 cut(s) 235, 236, 368
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 549
PvuI CGATCG 1 cut(s) 1293
RsaI GTAC 5 cut(s) 155, 383, 1118, 1122, 1353
RsaNI GTAC 5 cut(s) 154, 382, 1117, 1121, 1352
RseI CAYNNNNRTG 3 cut(s) 656, 672, 1142
SaqAI TTAA 2 cut(s) 33, 1070
SatI GCNGC 7 cut(s) 119, 249, 356, 398, 401, 600, 1128
Sau3AI GATC 7 cut(s) 270, 334, 549, 679, 692, 1044, 1290
Sau96I GGNCC 3 cut(s) 235, 236, 368
SchI GAGTC 1 cut(s) 1058
ScrFI CCNGG 5 cut(s) 41, 240, 265, 321, 1083
SduI GDGCHC 4 cut(s) 91, 239, 321, 1339
SfaNI GCATC 1 cut(s) 870
SfcI CTRYAG 1 cut(s) 921
SfuI TTCGAA 1 cut(s) 474
SmiMI CAYNNNNRTG 3 cut(s) 656, 672, 1142
SmlI CTYRAG 1 cut(s) 820
SmoI CTYRAG 1 cut(s) 820
SnaBI TACGTA 1 cut(s) 1120
SsiI CCGC 1 cut(s) 398
SspI AATATT 1 cut(s) 870
SspMI CTAG 4 cut(s) 81, 350, 377, 947
StyD4I CCNGG 5 cut(s) 39, 238, 263, 319, 1081
TaaI ACNGT 4 cut(s) 362, 412, 442, 922
TaiI ACGT 2 cut(s) 1122, 1342
TaqI TCGA 9 cut(s) 102, 337, 474, 644, 691, 701, 1047, 1202, 1289
TatI WGTACW 1 cut(s) 1351
TauI GCSGC 1 cut(s) 400
TfiI GAWTC 2 cut(s) 784, 1134
Tru1I TTAA 2 cut(s) 33, 1070
Tru9I TTAA 2 cut(s) 33, 1070
TscAI CASTG 3 cut(s) 365, 1117, 1149
TseFI GTSAC 5 cut(s) 172, 406, 637, 662, 1237
TseI GCWGC 6 cut(s) 118, 248, 355, 400, 599, 1127
Tsp45I GTSAC 5 cut(s) 172, 406, 637, 662, 1237
TspDTI ATGAA 8 cut(s) 17, 78, 324, 414, 508, 595, 675, 1126
TspRI CASTG 3 cut(s) 365, 1117, 1149
Van91I CCANNNNNTGG 1 cut(s) 1160
XapI RAATTY 1 cut(s) 467
XceI RCATGY 2 cut(s) 677, 1219
XmiI GTMKAC 2 cut(s) 437, 924
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 4 cut(s) 81, 350, 377, 947
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.