MD15G1398900.v1.1

Lysine histidine transporter-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
49974617 .. 49977351
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1398900.v1.1.491

Sequence Viewer

Length: 1365 bp
ATGACCGACCTACATCAATCAAGTGCTCAAGCGGAAAACACTACGAATGAAAATGAAGCAGCTAGAAGGGCCCAAGAGCAACTCGATATAAATAACTGGCTGCCCATCACTGCTGACAGGAATGCAAAATGGTGGTACTCAGCTTTCCACAATGTCACGGCTGTTGTTGGTGCAGGAATACTGGGCTTACCGTATGCATTATCAGGATGTGGCTGGGGCCCTGGAATTGCAGCCATTTTCTTGTCATGGGTGATCACTTTCTACTCATTCTGGCAACTGATTAGACTGCATGAAATAGTACCCGGGCAGCGTTTTGATCGATACCCGGAACTAGGGCAGCATTGTTTTGGGCCAAAACTAGGGTACTGGATTATCATGCCTCAGCAGATGACTGTGCAGGTGGCTTCATGCATTGTGTATACAGTCACTGGTGGCAAGTCATTGAAAAAATTCTTCGAACTCGTTGTTCCAAGCATAGGCCATATTAGACAAACATATTTTATCCTCTTCTTTACTGTATTGCAATTAGGGCTCTCCCAATCTCCCAATTTCAATTCTCTGAAAGGAATTTCTCTCCTCGCGGCACTCATGTCTTGCGGTTACGCGATGATAGCATTTGTGACATCGACAATCATGGGTGTGAAAAACCACGAGCATGTTGATCATTCGCTTCGATCTCATACGACACCAAGCCAAGTATTTGATATGTTGGGTGGATTAGGAACAATAGCATTTGCTTTTGCCGGACACAGCGTGGCTTTAGAGATTCAAGCCACAATCCCTTCAACTCCAGAGAAACCCTCAAGAATTGCAATGTGGAGAGGCGTTGTCGTGGCTTACGTCATCGTAATATTTTTCTATCTTGCAGTTGCAATCTCTGGCTTTTGGGCTTTTGGCAATACTGTAGAGGATGATGTTCTCATCTCACTAGAAAAACCTGCTTGGCTCATCGCAGCCGCTAACCTAATGGTGTTTTTCCATGTTATAGGAAGCTATCAGGTCTTTGCAATGCCTGTGTTTGATCTGATCGAGTCAGTTTTAGTAAATAATTTACGTTTCAAGCCAGGATTACTATTGCGTTTCATTGCTCGCAGTGCGTACGTACTCGTAGCAGGGTTCATTGCAATGTGCATTCCATTTTTTGGAGGATTGTTAGGACTATTTGGAGGTTTAGTGTTCTCCTCGACATCTTATTACATGCCTTGCGTTATGTGGATTGTCGTTCACAAACCAAAAAGATTTAGTATGCACTGGTGGGCCTCATGGTTTTCGATCGTGGTGGGCGTGCTGCTGGCTCTTTTTTCACCCATAGGAGGAGCACGCGAAATTATTATGCAAGCCAAAAGTTACAAAATGTTTTCCTAG

Protein Analysis

455

Amino Acids

50.48

Weight (kDa)

8.93

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 41 - 438 1.1e-92 Transmembrane amino acid transporter protein
Trp_Tyr_perm PF03222 47 - 290 6.2e-07 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 388
Acc36I ACCTGC 2 cut(s) 388, 946
AccB7I CCANNNNNTGG 1 cut(s) 1142
AccI GTMKAC 1 cut(s) 419
AccII CGCG 3 cut(s) 581, 605, 1323
AciI CCGC 4 cut(s) 32, 581, 597, 957
AcsI RAATTY 2 cut(s) 449, 567
AdeI CACNNNGTG 1 cut(s) 754
AfaI GTAC 5 cut(s) 137, 300, 365, 1100, 1104
AfiI CCNNNNNNNGG 5 cut(s) 332, 359, 476, 1142, 1313
AgsI TTSAA 5 cut(s) 445, 553, 770, 786, 1060
AjnI CCWGG 2 cut(s) 220, 1063
AluBI AGCT 3 cut(s) 62, 143, 993
AluI AGCT 3 cut(s) 62, 143, 993
Alw21I GWGCWC 2 cut(s) 28, 1321
AlwNI CAGNNNCTG 1 cut(s) 428
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 5 cut(s) 69, 217, 350, 478, 1257
ApaI GGGCCC 2 cut(s) 73, 221
ApeKI GCWGC 7 cut(s) 59, 100, 230, 307, 337, 953, 1288
ApoI RAATTY 2 cut(s) 449, 567
Asp700I GAANNNNTTC 1 cut(s) 449
AspS9I GGNCC 6 cut(s) 69, 70, 217, 218, 350, 1257
AsuC2I CCSGG 3 cut(s) 303, 304, 326
AsuHPI GGTGA 2 cut(s) 262, 1296
AsuII TTCGAA 1 cut(s) 456
AvaI CYCGRG 1 cut(s) 302
BaeGI GKGCMC 2 cut(s) 73, 221
BanII GRGCYC 3 cut(s) 73, 221, 534
BauI CACGAG 1 cut(s) 650
Bbv12I GWGCWC 2 cut(s) 28, 1321
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 7 cut(s) 71, 87, 242, 319, 349, 965, 1275
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 2 cut(s) 222, 1065
BclI TGATCA 2 cut(s) 252, 661
BcnI CCSGG 3 cut(s) 303, 304, 326
BfaI CTAG 5 cut(s) 63, 332, 359, 929, 1363
BfmI CTRYAG 1 cut(s) 903
BfuAI ACCTGC 2 cut(s) 388, 946
BisI GCNGC 9 cut(s) 60, 101, 231, 308, 338, 582, 954, 957, 1289
BlsI GCNGC 9 cut(s) 61, 102, 232, 309, 339, 583, 955, 958, 1290
Bme1390I CCNGG 5 cut(s) 222, 303, 304, 326, 1065
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 6 cut(s) 69, 70, 217, 218, 350, 1257
BmiI GGNNCC 3 cut(s) 71, 218, 219
BmrFI CCNGG 5 cut(s) 222, 303, 304, 326, 1065
BmrI ACTGGG 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 785, 817
BpmI CTGGAG 1 cut(s) 774
Bpu10I CCTNAGC 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 12, 787
BpuMI CCSGG 3 cut(s) 303, 304, 326
Bsa29I ATCGAT 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 1102
BsaJI CCNNGG 2 cut(s) 220, 302
BsaXI ACNNNNNCTCC 2 cut(s) 1158, 1188
Bsc4I CCNNNNNNNGG 5 cut(s) 332, 359, 476, 1142, 1313
Bse1I ACTGG 5 cut(s) 101, 186, 371, 433, 1256
Bse3DI GCAATG 5 cut(s) 819, 1014, 1083, 1119, 1131
BseBI CCWGG 2 cut(s) 222, 1065
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 220, 302
BseGI GGATG 2 cut(s) 212, 916
BseLI CCNNNNNNNGG 5 cut(s) 332, 359, 476, 1142, 1313
BseMI GCAATG 5 cut(s) 819, 1014, 1083, 1119, 1131
BseMII CTCAG 2 cut(s) 153, 395
BseNI ACTGG 5 cut(s) 101, 186, 371, 433, 1256
BseRI GAGGAG 3 cut(s) 566, 1171, 1329
BseSI GKGCMC 2 cut(s) 73, 221
BseXI GCAGC 7 cut(s) 71, 87, 242, 319, 349, 965, 1275
BseYI CCCAGC 1 cut(s) 213
BsgI GTGCAG 2 cut(s) 192, 416
Bsh1236I CGCG 3 cut(s) 581, 605, 1323
Bsh1285I CGRYCG 1 cut(s) 1275
BshFI GGCC 5 cut(s) 71, 219, 352, 480, 1259
BshVI ATCGAT 1 cut(s) 319
BsiEI CGRYCG 1 cut(s) 1275
BsiHKAI GWGCWC 2 cut(s) 28, 1321
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 3 cut(s) 303, 326, 744
BsiWI CGTACG 1 cut(s) 1098
BslI CCNNNNNNNGG 5 cut(s) 332, 359, 476, 1142, 1313
BsmI GAATGC 2 cut(s) 127, 1131
BsnI GGCC 5 cut(s) 71, 219, 352, 480, 1259
BsoBI CYCGRG 1 cut(s) 302
Bsp119I TTCGAA 1 cut(s) 456
Bsp120I GGGCCC 2 cut(s) 69, 217
Bsp1286I GDGCHC 5 cut(s) 28, 73, 221, 534, 1321
Bsp143I GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
BspACI CCGC 4 cut(s) 32, 581, 597, 957
BspANI GGCC 5 cut(s) 71, 219, 352, 480, 1259
BspCNI CTCAG 2 cut(s) 152, 394
BspDI ATCGAT 1 cut(s) 319
BspFNI CGCG 3 cut(s) 581, 605, 1323
BspLI GGNNCC 3 cut(s) 71, 218, 219
BspMI ACCTGC 2 cut(s) 388, 946
BspT104I TTCGAA 1 cut(s) 456
BsrDI GCAATG 5 cut(s) 819, 1014, 1083, 1119, 1131
BsrI ACTGG 5 cut(s) 101, 186, 371, 433, 1256
BssECI CCNNGG 2 cut(s) 220, 302
BssMI GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
BssNAI GTATAC 1 cut(s) 420
BssSI CACGAG 1 cut(s) 650
Bst1107I GTATAC 1 cut(s) 420
Bst2BI CACGAG 1 cut(s) 650
Bst2UI CCWGG 2 cut(s) 222, 1065
Bst4CI ACNGT 5 cut(s) 192, 394, 424, 517, 904
Bst6I CTCTTC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 1102
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 5 cut(s) 1090, 1286, 1293, 1321, 1338
BstDEI CTNAG 2 cut(s) 139, 381
BstF5I GGATG 2 cut(s) 212, 916
BstFNI CGCG 3 cut(s) 581, 605, 1323
BstKTI GATC 7 cut(s) 255, 319, 664, 677, 1024, 1029, 1275
BstMBI GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
BstMCI CGRYCG 1 cut(s) 1275
BstMWI GCNNNNNNNGC 4 cut(s) 68, 529, 611, 1094
BstNI CCWGG 2 cut(s) 222, 1065
BstNSI RCATGY 2 cut(s) 659, 1201
BstSCI CCNGG 5 cut(s) 220, 301, 302, 324, 1063
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 2 cut(s) 73, 221
BstSNI TACGTA 1 cut(s) 1102
BstUI CGCG 3 cut(s) 581, 605, 1323
BstV1I GCAGC 7 cut(s) 71, 87, 242, 319, 349, 965, 1275
BstZ17I GTATAC 1 cut(s) 420
Bsu15I ATCGAT 1 cut(s) 319
BsuRI GGCC 5 cut(s) 71, 219, 352, 480, 1259
BsuTUI ATCGAT 1 cut(s) 319
BtgZI GCGATG 2 cut(s) 620, 934
BtsCI GGATG 2 cut(s) 212, 916
BtsI GCAGTG 2 cut(s) 108, 1099
BtsIMutI CAGTG 4 cut(s) 108, 426, 1099, 1249
BveI ACCTGC 2 cut(s) 388, 946
Cac8I GCNNGC 5 cut(s) 1090, 1286, 1293, 1321, 1338
CaiI CAGNNNCTG 1 cut(s) 428
Cfr13I GGNCC 6 cut(s) 69, 70, 217, 218, 350, 1257
Cfr9I CCCGGG 1 cut(s) 302
ClaI ATCGAT 1 cut(s) 319
Csp6I GTAC 5 cut(s) 136, 299, 364, 1099, 1103
CviQI GTAC 5 cut(s) 136, 299, 364, 1099, 1103
DdeI CTNAG 2 cut(s) 139, 381
DpnI GATC 7 cut(s) 254, 318, 663, 676, 1023, 1028, 1274
DpnII GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
DraIII CACNNNGTG 1 cut(s) 754
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco105I TACGTA 1 cut(s) 1102
Eco24I GRGCYC 3 cut(s) 73, 221, 534
Eco88I CYCGRG 1 cut(s) 302
EcoO109I RGGNCCY 3 cut(s) 69, 217, 218
EcoRII CCWGG 2 cut(s) 220, 1063
EcoT22I ATGCAT 2 cut(s) 199, 413
EcoT38I GRGCYC 3 cut(s) 73, 221, 534
FbaI TGATCA 2 cut(s) 252, 661
FblI GTMKAC 1 cut(s) 419
Fnu4HI GCNGC 9 cut(s) 60, 101, 231, 308, 338, 582, 954, 957, 1289
FokI GGATG 2 cut(s) 219, 923
FriOI GRGCYC 3 cut(s) 73, 221, 534
Fsp4HI GCNGC 9 cut(s) 60, 101, 231, 308, 338, 582, 954, 957, 1289
FspBI CTAG 5 cut(s) 63, 332, 359, 929, 1363
GluI GCNGC 9 cut(s) 60, 101, 231, 308, 338, 582, 954, 957, 1289
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 1 cut(s) 774
HaeIII GGCC 5 cut(s) 71, 219, 352, 480, 1259
HapII CCGG 3 cut(s) 303, 326, 744
HinfI GANTC 2 cut(s) 766, 1031
HpaII CCGG 3 cut(s) 303, 326, 744
HphI GGTGA 2 cut(s) 262, 1296
Hpy166II GTNNAC 2 cut(s) 420, 1225
Hpy188I TCNGA 2 cut(s) 561, 1026
Hpy188III TCNNGA 3 cut(s) 204, 791, 804
Hpy8I GTNNAC 2 cut(s) 420, 1225
HpyAV CCTTC 2 cut(s) 60, 792
HpyCH4III ACNGT 5 cut(s) 192, 394, 424, 517, 904
HpyCH4IV ACGT 3 cut(s) 840, 1054, 1101
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 529, 611, 1094
HpyF3I CTNAG 2 cut(s) 139, 381
HpySE526I ACGT 3 cut(s) 840, 1054, 1101
Ksp22I TGATCA 2 cut(s) 252, 661
Kzo9I GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
LmnI GCTCC 1 cut(s) 1316
Lsp1109I GCAGC 7 cut(s) 71, 87, 242, 319, 349, 965, 1275
MaeI CTAG 5 cut(s) 63, 332, 359, 929, 1363
MaeII ACGT 3 cut(s) 840, 1054, 1101
MaeIII GTNAC 5 cut(s) 154, 424, 599, 619, 1346
MalI GATC 7 cut(s) 254, 318, 663, 676, 1023, 1028, 1274
MboI GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
MboII GAAGA 2 cut(s) 445, 499
MhlI GDGCHC 5 cut(s) 28, 73, 221, 534, 1321
MluCI AATT 9 cut(s) 225, 449, 524, 547, 553, 567, 807, 1048, 1326
MlyI GAGTC 1 cut(s) 1040
Mph1103I ATGCAT 2 cut(s) 199, 413
MroXI GAANNNNTTC 1 cut(s) 449
MslI CAYNNNNRTG 3 cut(s) 638, 654, 1124
MspI CCGG 3 cut(s) 303, 326, 744
MspR9I CCNGG 5 cut(s) 222, 303, 304, 326, 1065
Mva1269I GAATGC 2 cut(s) 127, 1131
MvaI CCWGG 2 cut(s) 222, 1065
MvnI CGCG 3 cut(s) 581, 605, 1323
MwoI GCNNNNNNNGC 4 cut(s) 68, 529, 611, 1094
NciI CCSGG 3 cut(s) 303, 304, 326
NdeII GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
NlaIV GGNNCC 3 cut(s) 71, 218, 219
NmuCI GTSAC 3 cut(s) 154, 424, 619
NsiI ATGCAT 2 cut(s) 199, 413
NspI RCATGY 2 cut(s) 659, 1201
NspV TTCGAA 1 cut(s) 456
PaqCI CACCTGC 1 cut(s) 388
PcsI WCGNNNNNNNCGW 2 cut(s) 837, 1281
PctI GAATGC 2 cut(s) 127, 1131
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 1 cut(s) 766
Pfl23II CGTACG 1 cut(s) 1098
PflMI CCANNNNNTGG 1 cut(s) 1142
PkrI GCNGC 9 cut(s) 61, 102, 232, 309, 339, 583, 955, 958, 1290
Ple19I CGATCG 1 cut(s) 1275
PleI GAGTC 1 cut(s) 1039
PpsI GAGTC 1 cut(s) 1039
Ppu21I YACGTR 1 cut(s) 1102
Psp6I CCWGG 2 cut(s) 220, 1063
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 2 cut(s) 220, 1063
PspLI CGTACG 1 cut(s) 1098
PspN4I GGNNCC 3 cut(s) 71, 218, 219
PspOMI GGGCCC 2 cut(s) 69, 217
PspPI GGNCC 6 cut(s) 69, 70, 217, 218, 350, 1257
PstNI CAGNNNCTG 1 cut(s) 428
PvuI CGATCG 1 cut(s) 1275
RsaI GTAC 5 cut(s) 137, 300, 365, 1100, 1104
RsaNI GTAC 5 cut(s) 136, 299, 364, 1099, 1103
RseI CAYNNNNRTG 3 cut(s) 638, 654, 1124
SatI GCNGC 9 cut(s) 60, 101, 231, 308, 338, 582, 954, 957, 1289
Sau3AI GATC 7 cut(s) 252, 316, 661, 674, 1021, 1026, 1272
Sau96I GGNCC 6 cut(s) 69, 70, 217, 218, 350, 1257
SchI GAGTC 1 cut(s) 1040
ScrFI CCNGG 5 cut(s) 222, 303, 304, 326, 1065
SduI GDGCHC 5 cut(s) 28, 73, 221, 534, 1321
SfcI CTRYAG 1 cut(s) 903
SfuI TTCGAA 1 cut(s) 456
SmaI CCCGGG 1 cut(s) 304
SmiMI CAYNNNNRTG 3 cut(s) 638, 654, 1124
SmlI CTYRAG 2 cut(s) 27, 802
SmoI CTYRAG 2 cut(s) 27, 802
SnaBI TACGTA 1 cut(s) 1102
Sse9I AATT 9 cut(s) 225, 449, 524, 547, 553, 567, 807, 1048, 1326
SsiI CCGC 4 cut(s) 32, 581, 597, 957
SspI AATATT 1 cut(s) 852
SspMI CTAG 5 cut(s) 63, 332, 359, 929, 1363
StyD4I CCNGG 5 cut(s) 220, 301, 302, 324, 1063
TaaI ACNGT 5 cut(s) 192, 394, 424, 517, 904
TaiI ACGT 3 cut(s) 843, 1057, 1104
TaqI TCGA 8 cut(s) 84, 319, 456, 626, 673, 1029, 1184, 1271
TaqII GACCGA 1 cut(s) 20
TasI AATT 9 cut(s) 225, 449, 524, 547, 553, 567, 807, 1048, 1326
TauI GCSGC 2 cut(s) 584, 959
TfiI GAWTC 1 cut(s) 766
TscAI CASTG 4 cut(s) 115, 433, 1099, 1256
TseFI GTSAC 3 cut(s) 154, 424, 619
TseI GCWGC 7 cut(s) 59, 100, 230, 307, 337, 953, 1288
Tsp45I GTSAC 3 cut(s) 154, 424, 619
TspDTI ATGAA 6 cut(s) 63, 69, 306, 396, 1072, 1108
TspMI CCCGGG 1 cut(s) 302
TspRI CASTG 4 cut(s) 115, 433, 1099, 1256
Van91I CCANNNNNTGG 1 cut(s) 1142
XapI RAATTY 2 cut(s) 449, 567
XceI RCATGY 2 cut(s) 659, 1201
XmaI CCCGGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 5 cut(s) 63, 332, 359, 929, 1363
Zsp2I ATGCAT 2 cut(s) 199, 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.