Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Reverse (-)

56193038 .. 56196061

Gene Structure 3024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG418900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTCATGTTTGCATATTGTTAGGATTCCTGGAATGACAGTCCTTATTCTTTCTTGGTTGATCACATTCTACTCGTTCTGGCAACTTATTGAATTGCATGAGATAGTTCCGGGAAAGCGATTTGATCGTTACCCAGAACTAGGGCAGCATTGTTTTGGACCCAAACTAGGGTATTGGATCGTCATGCCACAACAATTGATTGTGCAAGTGGCTTCAGGCATTGTGTATTGCGTCACAGGTGGGAAGTCACTGAAGAAATTCTTTGAACTCCTCTGGCCAGTCTGGGGTGATTATAGAACAACATACTTCATCCTCTTTTTCATTTGCTTGCAATTTGGGATCTCCCAAGCTCCAAATTTCAATTCTTTGAAAGGAGTTTCTCTCCTGGCTGCACTCATGTCTATTGGTTATGCCTCGATAGCATTTGTGGCATCAACAATTCAGGGTGTAAATCATCGTGAGAATGTGACCTATGGGATTCGGTCTTCGACACTTGCTGGTCAAATCTTTGATCTCTTGAATGGGTGTGGAACAATAGCATTTGCTTTTGCAGGACATAGTGTAGCTCTAGAAATTCAAGCTACAATTCCATCAACTCCAGAGAAACCATCAAAACATGCTATGTGGAAAGGTGTTGTGGTAGCTTATGTTGTTGTAGCGTTTTGCTATCTCTCAGTTTCACTATCCGGCTACTGGGCTTATGGCAGTCATGTAGAGGATGATGTTCTCATCTCACTAGATAAGCCTGCATGGCTAATTGCAGCGGCTAATTTCATGGTGTTTATTCATGTTATTGGAAGTTATCAGATCTTTAGTATGCCTGTATTTGACCAGATTGAGCAATATCTAGTAGAAAATCGAGGTTTCACCCCTGGACTACCTTTGCGCATCATTGCTCGTAGTTTATATGTTGCTGCAGTAGGGTTTGTTGCAATGTGCATTCCATTTTTTGGAGGCTTGTTAGGATTATTTGGAGGATTGGTATTCGCATCCACATCATTTTTTATGCCTTGTATTATGTGGATTGTCACCCAAAAACCAAAAGCATTTAGCTTTCACTGGACTTTTTCTTGGATATCCATTGTTATTGGCGTTTTGCTGGCAGTTCTATCACCAATAGGAGGGGCACGTACAATTATTATGGCAGCCAAAACTTACAAACTCTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

390

Amino Acids

43.26

Weight (kDa)

8.93

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	9 - 374	3.5e-74	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	887
AccB7I	CCANNNNNTGG	1 cut(s)	950
AciI	CCGC	1 cut(s)	764
AclWI	GGATC	2 cut(s)	185, 347
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	3 cut(s)	257, 355, 573
AcuI	CTGAAG	2 cut(s)	198, 272
AfaI	GTAC	1 cut(s)	1132
AfiI	CCNNNNNNNGG	7 cut(s)	140, 167, 168, 284, 693, 950, 1121
AgsI	TTSAA	6 cut(s)	92, 266, 361, 370, 520, 578
AjnI	CCWGG	3 cut(s)	28, 384, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	346, 378
AluBI	AGCT	5 cut(s)	350, 566, 581, 644, 1053
AluI	AGCT	5 cut(s)	350, 566, 581, 644, 1053
AlwI	GGATC	2 cut(s)	185, 347
AoxI	GGCC	1 cut(s)	275
ApeKI	GCWGC	5 cut(s)	145, 389, 761, 914, 1145
ApoI	RAATTY	3 cut(s)	257, 355, 573
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	4 cut(s)	299, 859, 1021, 1104
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	1129
BalI	TGGCCA	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	477
BbvI	GCAGC	5 cut(s)	157, 376, 773, 901, 1157
BccI	CCATC	2 cut(s)	598, 616
BciT130I	CCWGG	3 cut(s)	30, 386, 873
BclI	TGATCA	1 cut(s)	60
BcnI	CCSGG	1 cut(s)	111
BfaI	CTAG	5 cut(s)	140, 167, 569, 737, 848
BfmI	CTRYAG	1 cut(s)	915
BglI	GCCNNNNNGGC	1 cut(s)	751
BglII	AGATCT	1 cut(s)	807
BisI	GCNGC	6 cut(s)	146, 390, 762, 765, 915, 1146
BlsI	GCNGC	6 cut(s)	147, 391, 763, 766, 916, 1147
Bme1390I	CCNGG	4 cut(s)	30, 111, 386, 873
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	4 cut(s)	30, 111, 386, 873
BmrI	ACTGGG	1 cut(s)	703
BmsI	GCATC	3 cut(s)	440, 897, 998
BmuI	ACTGGG	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	477
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
BpmI	CTGGAG	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	1130
BsaJI	CCNNGG	1 cut(s)	871
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bsc4I	CCNNNNNNNGG	7 cut(s)	140, 167, 168, 284, 693, 950, 1121
Bse1I	ACTGG	3 cut(s)	278, 698, 1064
Bse3DI	GCAATG	2 cut(s)	891, 939
BseBI	CCWGG	3 cut(s)	30, 386, 873
BseDI	CCNNGG	1 cut(s)	871
BseGI	GGATG	3 cut(s)	309, 724, 989
BseLI	CCNNNNNNNGG	7 cut(s)	140, 167, 168, 284, 693, 950, 1121
BseMI	GCAATG	2 cut(s)	891, 939
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	3 cut(s)	278, 698, 1064
BseRI	GAGGAG	1 cut(s)	260
BseSI	GKGCMC	1 cut(s)	1129
BseXI	GCAGC	5 cut(s)	157, 376, 773, 901, 1157
BsgI	GTGCAG	1 cut(s)	375
BshFI	GGCC	1 cut(s)	277
BsiSI	CCGG	2 cut(s)	110, 687
BslI	CCNNNNNNNGG	7 cut(s)	140, 167, 168, 284, 693, 950, 1121
BsmI	GAATGC	1 cut(s)	939
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	1129
Bsp143I	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
BspACI	CCGC	1 cut(s)	764
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	686
BspLI	GGNNCC	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	919
BspPI	GGATC	2 cut(s)	185, 347
BsrDI	GCAATG	2 cut(s)	891, 939
BsrI	ACTGG	3 cut(s)	278, 698, 1064
BssECI	CCNNGG	1 cut(s)	871
BssMI	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
Bst2UI	CCWGG	3 cut(s)	30, 386, 873
Bst4CI	ACNGT	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	1130
BstC8I	GCNNGC	3 cut(s)	329, 747, 1101
BstDEI	CTNAG	2 cut(s)	673, 1170
BstF5I	GGATG	3 cut(s)	309, 724, 989
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	6 cut(s)	63, 127, 180, 342, 514, 810
BstMBI	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 428, 751
BstNI	CCWGG	3 cut(s)	30, 386, 873
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	4 cut(s)	28, 109, 384, 871
BstSFI	CTRYAG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	1129
BstV1I	GCAGC	5 cut(s)	157, 376, 773, 901, 1157
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	339, 807
BstYI	RGATCY	2 cut(s)	339, 807
BsuRI	GGCC	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	309, 724, 989
BtsIMutI	CAGTG	2 cut(s)	248, 1057
Cac8I	GCNNGC	3 cut(s)	329, 747, 1101
CfoI	GCGC	1 cut(s)	888
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	1131
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	9 cut(s)	6, 98, 184, 397, 617, 710, 750, 775, 788
CviQI	GTAC	1 cut(s)	1131
DdeI	CTNAG	2 cut(s)	673, 1170
DpnI	GATC	6 cut(s)	62, 126, 179, 341, 513, 809
DpnII	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
EaeI	YGGCCR	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	1 cut(s)	158
Eco57I	CTGAAG	2 cut(s)	198, 272
EcoRII	CCWGG	3 cut(s)	28, 384, 871
EcoRV	GATATC	1 cut(s)	1077
FaeI	CATG	9 cut(s)	9, 101, 187, 400, 620, 713, 753, 778, 791
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FatI	CATG	9 cut(s)	5, 97, 183, 396, 616, 709, 749, 774, 787
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	6 cut(s)	146, 390, 762, 765, 915, 1146
FokI	GGATG	3 cut(s)	296, 731, 976
Fsp4HI	GCNGC	6 cut(s)	146, 390, 762, 765, 915, 1146
FspBI	CTAG	5 cut(s)	140, 167, 569, 737, 848
FspI	TGCGCA	1 cut(s)	887
GlaI	GCGC	1 cut(s)	887
GluI	GCNGC	6 cut(s)	146, 390, 762, 765, 915, 1146
GsuI	CTGGAG	1 cut(s)	582
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	2 cut(s)	110, 687
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	888
Hin1II	CATG	9 cut(s)	9, 101, 187, 400, 620, 713, 753, 778, 791
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HinfI	GANTC	2 cut(s)	25, 478
HpaII	CCGG	2 cut(s)	110, 687
HphI	GGTGA	4 cut(s)	299, 859, 1021, 1104
Hpy188I	TCNGA	1 cut(s)	807
Hpy188III	TCNNGA	4 cut(s)	458, 517, 569, 599
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 428, 751
HpyF3I	CTNAG	2 cut(s)	673, 1170
HpySE526I	ACGT	1 cut(s)	1129
Hsp92II	CATG	9 cut(s)	9, 101, 187, 400, 620, 713, 753, 778, 791
HspAI	GCGC	1 cut(s)	886
Ksp22I	TGATCA	1 cut(s)	60
Kzo9I	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	5 cut(s)	157, 376, 773, 901, 1157
LweI	GCATC	3 cut(s)	440, 897, 998
MaeI	CTAG	5 cut(s)	140, 167, 569, 737, 848
MaeII	ACGT	1 cut(s)	1129
MaeIII	GTNAC	5 cut(s)	128, 232, 246, 466, 1027
MalI	GATC	6 cut(s)	62, 126, 179, 341, 513, 809
MboI	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
MboII	GAAGA	2 cut(s)	265, 477
MfeI	CAATTG	1 cut(s)	194
MflI	RGATCY	2 cut(s)	339, 807
MhlI	GDGCHC	1 cut(s)	1129
MlsI	TGGCCA	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	277
MnlI	CCTC	8 cut(s)	281, 323, 424, 709, 854, 947, 968, 1115
Mox20I	TGGCCA	1 cut(s)	277
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	277
Msp20I	TGGCCA	1 cut(s)	277
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	2 cut(s)	110, 687
MspR9I	CCNGG	4 cut(s)	30, 111, 386, 873
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	939
MvaI	CCWGG	3 cut(s)	30, 386, 873
MwoI	GCNNNNNNNGC	3 cut(s)	419, 428, 751
NciI	CCSGG	1 cut(s)	111
NdeII	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
NlaIII	CATG	9 cut(s)	9, 101, 187, 400, 620, 713, 753, 778, 791
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	4 cut(s)	232, 246, 466, 1027
NsbI	TGCGCA	1 cut(s)	887
NspI	RCATGY	1 cut(s)	620
PctI	GAATGC	1 cut(s)	939
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	2 cut(s)	25, 478
PflMI	CCANNNNNTGG	1 cut(s)	950
PfoI	TCCNGGA	2 cut(s)	28, 109
PkrI	GCNGC	6 cut(s)	147, 391, 763, 766, 916, 1147
Ppu21I	YACGTR	1 cut(s)	1130
Psp6I	CCWGG	3 cut(s)	28, 384, 871
PspGI	CCWGG	3 cut(s)	28, 384, 871
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	919
PsuI	RGATCY	2 cut(s)	339, 807
RsaI	GTAC	1 cut(s)	1132
RsaNI	GTAC	1 cut(s)	1131
SatI	GCNGC	6 cut(s)	146, 390, 762, 765, 915, 1146
Sau3AI	GATC	6 cut(s)	60, 124, 177, 339, 511, 807
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	4 cut(s)	30, 111, 386, 873
SduI	GDGCHC	1 cut(s)	1129
SfaNI	GCATC	3 cut(s)	440, 897, 998
SfcI	CTRYAG	1 cut(s)	915
SinI	GGWCC	1 cut(s)	158
SsiI	CCGC	1 cut(s)	764
SspMI	CTAG	5 cut(s)	140, 167, 569, 737, 848
StyD4I	CCNGG	4 cut(s)	28, 109, 384, 871
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	1132
TaqI	TCGA	3 cut(s)	416, 488, 859
TaqII	GACCGA	1 cut(s)	471
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	2 cut(s)	25, 478
TscAI	CASTG	2 cut(s)	255, 1064
TseFI	GTSAC	4 cut(s)	232, 246, 466, 1027
TseI	GCWGC	5 cut(s)	145, 389, 761, 914, 1145
Tsp45I	GTSAC	4 cut(s)	232, 246, 466, 1027
TspDTI	ATGAA	4 cut(s)	298, 310, 763, 776
TspRI	CASTG	2 cut(s)	255, 1064
Van91I	CCANNNNNTGG	1 cut(s)	950
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	3 cut(s)	257, 355, 573
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	1 cut(s)	620
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	5 cut(s)	140, 167, 569, 737, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.