Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0007571

Physical Location & Seq

Genomic Coordinates Forward (+)

36861731 .. 36864505

Gene Structure 2775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G016050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGAGGTAGATAACCATAAACAACTATCTTCTTATGAAAGGGGAAATGAACAAGCTGGTGATAAAACTATAAGCCAGCAACAAATTGATGCATCAAACTGGCTCCCGATAACTGCTGATAGGAATGCAAAATGGTATTATTCGGCTTTCCACAATGTTACTGCGACTGTTGGTGCCGGAATTCTAGGGTTACCATATGCAATGTCACAACTCGGTTGGATTCCTGGAATCACAGTCATTGTTCTTTCTTGGTTGATCACCTTCTACTCATTCTGGCAACTTGTGGAATTGCATGAGAGTGTGCCCGGAAAGCGATTCGATCGTTACCCAGAACTAGGGCAGCATTGTTTTGGACCCAAACTGGGGTATTGGATTATCATGCCACAACAAACTACTGTCCAAGTGGCTTCAGGCATTGTGTATTGCGTCACCGGTGGCAAATCATTGAAGAAAGTCTTTGAACTTCTCATTCCGGCATGGGGTGATATTAGAACAACTTACTTCATCCTTTTCTTTATTTGCTTGCAATTTGTGATATCACAATCTCCAAATTTCAATTCTTTAAAGGGAGTTTCTCTCTTGGCTGCGGTCATGTCTTGTGGTTATTCTTTAATAGCATTTGTGGCATCAACAATCCAAGGTACGAAACATCATGAGAATATGAGCTATGGAGTTCGATCTTCTACAACTGCTGGTCAAGTCTTTGATATCTTGAATGGGTGTGGAACAATAGCATTTGCTTTTGCAGGACATAGTGTATCTTTAGAAATTCAAGCTACAATTCCTTCAACTCCAGAGAAACCATCAAAATATGCTATGTGGAAAGGTGTTGTGGTAGCTTATGTTATTGTAGCATTTTGCTATGTCCCGGTTGCAGTGTCTGGCTACTGGGCTTATGGCCGTCTTGTAGAGGATGATGTTCTCATCTCACTAGATAAGCCTGCATGGCTAATTGCAGCGGCTAACTTTATGGTGTTTCTTCATGTTATTGGAAGCTACCAAGTTTTCAGTATGCCCGTGTTTGACCAGATCGAGCAATATTTGGTAGAAAATCGGGGTTTTACCCCTGGACGACCTTTGCGGATCATTGCTCGTAGTTTATATGTAGCCGCAGCAGGGTTTGTTGCAATGTGCATTCCATTTTTTGGAGGCTTATTAGGATTATTTGGAGGCTTGGTATTCTCCTCTATATCGTTTTATATGCCTTGTGTTATGTGGCTTATCACCCAAAAACCAAAAGCATTTAGCTTTCATTGGCTTACTTCATGGGTATGCATTGTTATGGGCGTCCTGCTGGCAGTTCTTTCACCAATAGGAGGGGCACGTACAATTTACATGCAAGCCAAAACTTACCATTTCTTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0034220 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

455

Amino Acids

50.46

Weight (kDa)

8.6

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	42 - 439	1.8e-93	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	54 - 216	1.3e-08	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71680 AT1G71680
fragaria_vesca	FvH4_5g33070
malus_domestica	MD08G1215100.v1.1 MD15G1398900.v1.1
prunus_persica	Prupe.1G546600_v2.0.a1
pyrus_communis	pycom15g35780
rosa_chinensis	RchiOBHm_Chr4g0414671 RchiOBHm_Chr7g0231241
rosa_laevigata	RLG00000001426 RLG00000008126
rosa_multiflora	Rmu_sc0001192.1_g000019 Rmu_sc0004571.1_g000017
rosa_roxburghii	Rroxscaffold_3G00229410 Rroxscaffold_5G00358480
rosa_rugosa	Rorug04G0129400 Rorug07G0265400
rosa_samantha	Rh4AG187700 Rh4CG200000 Rh7AG418900 Rh7BG394300 Rh7CG438600
rosa_wichuraiana	Rw4G016050 Rw7G034640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	1145
AciI	CCGC	4 cut(s)	587, 959, 1081, 1110
AclWI	GGATC	1 cut(s)	1091
AcoI	YGGCCR	1 cut(s)	898
AcsI	RAATTY	3 cut(s)	180, 550, 768
AcuI	CTGAAG	1 cut(s)	393
AcyI	GRCGYC	1 cut(s)	1287
AfaI	GTAC	2 cut(s)	643, 1327
AfiI	CCNNNNNNNGG	7 cut(s)	335, 362, 363, 479, 1116, 1145, 1316
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	6 cut(s)	448, 461, 556, 715, 773, 789
AjnI	CCWGG	2 cut(s)	223, 1066
AjuI	GAANNNNNNNTTGG	2 cut(s)	541, 573
AluBI	AGCT	6 cut(s)	56, 666, 776, 839, 996, 1248
AluI	AGCT	6 cut(s)	56, 666, 776, 839, 996, 1248
AlwI	GGATC	1 cut(s)	1091
AlwNI	CAGNNNCTG	1 cut(s)	881
AoxI	GGCC	1 cut(s)	898
ApeKI	GCWGC	4 cut(s)	340, 584, 956, 1112
ApoI	RAATTY	3 cut(s)	180, 550, 768
AsiGI	ACCGGT	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	2 cut(s)	306, 869
AsuHPI	GGTGA	6 cut(s)	71, 250, 421, 494, 1216, 1299
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	306, 1324
BanI	GGYRCC	1 cut(s)	173
BbvI	GCAGC	4 cut(s)	352, 571, 968, 1124
BccI	CCATC	1 cut(s)	811
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	2 cut(s)	225, 1068
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	2 cut(s)	306, 869
BfaI	CTAG	3 cut(s)	185, 335, 932
BglI	GCCNNNNNGGC	1 cut(s)	946
BisI	GCNGC	6 cut(s)	341, 585, 957, 960, 1110, 1113
BlsI	GCNGC	6 cut(s)	342, 586, 958, 961, 1111, 1114
Bme1390I	CCNGG	4 cut(s)	225, 306, 869, 1068
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	3 cut(s)	104, 175, 355
BmrFI	CCNGG	4 cut(s)	225, 306, 869, 1068
BmrI	ACTGGG	2 cut(s)	371, 898
BmsI	GCATC	3 cut(s)	79, 101, 635
BmuI	ACTGGG	2 cut(s)	371, 898
BplI	GAGNNNNNCTC	2 cut(s)	561, 593
BpmI	CTGGAG	1 cut(s)	777
BpuMI	CCSGG	2 cut(s)	306, 869
BsaAI	YACGTR	1 cut(s)	1325
BsaHI	GRCGYC	1 cut(s)	1287
BsaJI	CCNNGG	2 cut(s)	637, 1066
BsaWI	WCCGGW	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	1161, 1191
Bsc4I	CCNNNNNNNGG	7 cut(s)	335, 362, 363, 479, 1116, 1145, 1316
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	3 cut(s)	104, 366, 893
Bse3DI	GCAATG	3 cut(s)	207, 1086, 1134
BseBI	CCWGG	2 cut(s)	225, 1068
BseDI	CCNNGG	2 cut(s)	637, 1066
BseGI	GGATG	2 cut(s)	504, 919
BseLI	CCNNNNNNNGG	7 cut(s)	335, 362, 363, 479, 1116, 1145, 1316
BseMI	GCAATG	3 cut(s)	207, 1086, 1134
BseNI	ACTGG	3 cut(s)	104, 366, 893
BseRI	GAGGAG	1 cut(s)	1174
BseSI	GKGCMC	2 cut(s)	306, 1324
BseXI	GCAGC	4 cut(s)	352, 571, 968, 1124
Bsh1285I	CGRYCG	1 cut(s)	322
BshFI	GGCC	1 cut(s)	900
BshNI	GGYRCC	1 cut(s)	173
BshTI	ACCGGT	1 cut(s)	431
BsiEI	CGRYCG	1 cut(s)	322
BsiSI	CCGG	5 cut(s)	177, 306, 432, 473, 869
BslFI	GGGAC	1 cut(s)	851
BslI	CCNNNNNNNGG	7 cut(s)	335, 362, 363, 479, 1116, 1145, 1316
BsmFI	GGGAC	1 cut(s)	851
BsmI	GAATGC	2 cut(s)	130, 1134
BsnI	GGCC	1 cut(s)	900
Bsp1286I	GDGCHC	2 cut(s)	306, 1324
Bsp143I	GATC	5 cut(s)	255, 319, 677, 1029, 1083
BspACI	CCGC	4 cut(s)	587, 959, 1081, 1110
BspANI	GGCC	1 cut(s)	900
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	3 cut(s)	104, 175, 355
BspPI	GGATC	1 cut(s)	1091
BspT107I	GGYRCC	1 cut(s)	173
BsrDI	GCAATG	3 cut(s)	207, 1086, 1134
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	3 cut(s)	104, 366, 893
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	637, 1066
BssMI	GATC	5 cut(s)	255, 319, 677, 1029, 1083
BssNI	GRCGYC	1 cut(s)	1287
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	2 cut(s)	225, 1068
Bst4CI	ACNGT	3 cut(s)	169, 235, 397
BstACI	GRCGYC	1 cut(s)	1287
BstBAI	YACGTR	1 cut(s)	1325
BstC8I	GCNNGC	5 cut(s)	77, 524, 942, 1296, 1341
BstEII	GGTNACC	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	504, 919
BstKTI	GATC	5 cut(s)	258, 322, 680, 1032, 1086
BstMBI	GATC	5 cut(s)	255, 319, 677, 1029, 1083
BstMCI	CGRYCG	1 cut(s)	322
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 623, 946
BstNI	CCWGG	2 cut(s)	225, 1068
BstNSI	RCATGY	1 cut(s)	1339
BstPI	GGTNACC	1 cut(s)	189
BstSCI	CCNGG	4 cut(s)	223, 304, 867, 1066
BstSLI	GKGCMC	2 cut(s)	306, 1324
BstV1I	GCAGC	4 cut(s)	352, 571, 968, 1124
BsuRI	GGCC	1 cut(s)	900
BtsCI	GGATG	2 cut(s)	504, 919
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	882
Cac8I	GCNNGC	5 cut(s)	77, 524, 942, 1296, 1341
CaiI	CAGNNNCTG	1 cut(s)	881
CciI	TCATGA	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	2 cut(s)	415, 1276
Csp6I	GTAC	2 cut(s)	642, 1326
CspAI	ACCGGT	1 cut(s)	431
CviAII	CATG	9 cut(s)	293, 379, 477, 592, 653, 945, 983, 1266, 1336
CviQI	GTAC	2 cut(s)	642, 1326
DpnI	GATC	5 cut(s)	257, 321, 679, 1031, 1085
DpnII	GATC	5 cut(s)	255, 319, 677, 1029, 1083
DraI	TTTAAA	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	637
Eco32I	GATATC	2 cut(s)	537, 709
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	393
Eco91I	GGTNACC	1 cut(s)	189
EcoO65I	GGTNACC	1 cut(s)	189
EcoRI	GAATTC	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	223, 1066
EcoRV	GATATC	2 cut(s)	537, 709
EcoT14I	CCWWGG	1 cut(s)	637
EcoT22I	ATGCAT	2 cut(s)	94, 1277
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	9 cut(s)	296, 382, 480, 595, 656, 948, 986, 1269, 1339
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	851
FatI	CATG	9 cut(s)	292, 378, 476, 591, 652, 944, 982, 1265, 1335
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	6 cut(s)	341, 585, 957, 960, 1110, 1113
FokI	GGATG	2 cut(s)	491, 926
Fsp4HI	GCNGC	6 cut(s)	341, 585, 957, 960, 1110, 1113
FspBI	CTAG	3 cut(s)	185, 335, 932
GluI	GCNGC	6 cut(s)	341, 585, 957, 960, 1110, 1113
GsuI	CTGGAG	1 cut(s)	777
HaeIII	GGCC	1 cut(s)	900
HapII	CCGG	5 cut(s)	177, 306, 432, 473, 869
HgaI	GACGC	2 cut(s)	415, 1276
Hin1I	GRCGYC	1 cut(s)	1287
Hin1II	CATG	9 cut(s)	296, 382, 480, 595, 656, 948, 986, 1269, 1339
HinfI	GANTC	3 cut(s)	220, 228, 315
HpaII	CCGG	5 cut(s)	177, 306, 432, 473, 869
HphI	GGTGA	6 cut(s)	71, 250, 421, 494, 1216, 1299
Hpy188III	TCNNGA	4 cut(s)	106, 653, 712, 794
HpyAV	CCTTC	2 cut(s)	271, 795
HpyCH4III	ACNGT	3 cut(s)	169, 235, 397
HpyCH4IV	ACGT	1 cut(s)	1324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 623, 946
HpySE526I	ACGT	1 cut(s)	1324
Hsp92I	GRCGYC	1 cut(s)	1287
Hsp92II	CATG	9 cut(s)	296, 382, 480, 595, 656, 948, 986, 1269, 1339
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	5 cut(s)	255, 319, 677, 1029, 1083
LmnI	GCTCC	1 cut(s)	108
Lsp1109I	GCAGC	4 cut(s)	352, 571, 968, 1124
LweI	GCATC	3 cut(s)	79, 101, 635
MaeI	CTAG	3 cut(s)	185, 335, 932
MaeII	ACGT	1 cut(s)	1324
MaeIII	GTNAC	5 cut(s)	157, 189, 204, 323, 427
MalI	GATC	5 cut(s)	257, 321, 679, 1031, 1085
MboI	GATC	5 cut(s)	255, 319, 677, 1029, 1083
MboII	GAAGA	4 cut(s)	21, 460, 672, 971
MhlI	GDGCHC	2 cut(s)	306, 1324
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	5 cut(s)	904, 1142, 1163, 1195, 1310
Mph1103I	ATGCAT	2 cut(s)	94, 1277
MseI	TTAA	2 cut(s)	563, 611
MslI	CAYNNNNRTG	3 cut(s)	297, 1270, 1280
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	5 cut(s)	177, 306, 432, 473, 869
MspR9I	CCNGG	4 cut(s)	225, 306, 869, 1068
Mva1269I	GAATGC	2 cut(s)	130, 1134
MvaI	CCWGG	2 cut(s)	225, 1068
MwoI	GCNNNNNNNGC	3 cut(s)	310, 623, 946
NciI	CCSGG	2 cut(s)	306, 869
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	5 cut(s)	255, 319, 677, 1029, 1083
NlaIII	CATG	9 cut(s)	296, 382, 480, 595, 656, 948, 986, 1269, 1339
NlaIV	GGNNCC	3 cut(s)	104, 175, 355
NmuCI	GTSAC	2 cut(s)	204, 427
NsiI	ATGCAT	2 cut(s)	94, 1277
NspI	RCATGY	1 cut(s)	1339
PagI	TCATGA	1 cut(s)	652
PctI	GAATGC	2 cut(s)	130, 1134
PfeI	GAWTC	3 cut(s)	220, 228, 315
PflMI	CCANNNNNTGG	1 cut(s)	1145
PfoI	TCCNGGA	1 cut(s)	223
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	6 cut(s)	342, 586, 958, 961, 1111, 1114
Ple19I	CGATCG	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	1325
Psp6I	CCWGG	2 cut(s)	223, 1066
PspEI	GGTNACC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	223, 1066
PspN4I	GGNNCC	3 cut(s)	104, 175, 355
PspPI	GGNCC	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	881
PvuI	CGATCG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	643, 1327
RsaNI	GTAC	2 cut(s)	642, 1326
RseI	CAYNNNNRTG	3 cut(s)	297, 1270, 1280
SaqAI	TTAA	2 cut(s)	563, 611
SatI	GCNGC	6 cut(s)	341, 585, 957, 960, 1110, 1113
Sau3AI	GATC	5 cut(s)	255, 319, 677, 1029, 1083
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	4 cut(s)	225, 306, 869, 1068
SduI	GDGCHC	2 cut(s)	306, 1324
SfaNI	GCATC	3 cut(s)	79, 101, 635
SgrAI	CRCCGGYG	1 cut(s)	431
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	297, 1270, 1280
SsiI	CCGC	4 cut(s)	587, 959, 1081, 1110
SspI	AATATT	1 cut(s)	1040
SspMI	CTAG	3 cut(s)	185, 335, 932
StyD4I	CCNGG	4 cut(s)	223, 304, 867, 1066
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	3 cut(s)	169, 235, 397
TaiI	ACGT	1 cut(s)	1327
TaqI	TCGA	3 cut(s)	318, 676, 1032
TauI	GCSGC	2 cut(s)	962, 1112
TfiI	GAWTC	3 cut(s)	220, 228, 315
Tru1I	TTAA	2 cut(s)	563, 611
Tru9I	TTAA	2 cut(s)	563, 611
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	2 cut(s)	204, 427
TseI	GCWGC	4 cut(s)	340, 584, 956, 1112
Tsp45I	GTSAC	2 cut(s)	204, 427
TspDTI	ATGAA	6 cut(s)	51, 63, 493, 971, 1241, 1254
TspRI	CASTG	1 cut(s)	882
Van91I	CCANNNNNTGG	1 cut(s)	1145
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	3 cut(s)	180, 550, 768
XceI	RCATGY	1 cut(s)	1339
XspI	CTAG	3 cut(s)	185, 335, 932
Zsp2I	ATGCAT	2 cut(s)	94, 1277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.